MD08G1148800.v1.1

L-type lectin-domain containing receptor kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Reverse (-)
14979189 .. 14979691
503 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1148800.v1.1.491

Sequence Viewer

Length: 336 bp
ATGAGAAATCATAGGGATGGAGAGGATATAGAAAGCCAGTCAAGAACAACTGCAAATGCTCCGGAAATGTTCACTTACAAACAGATTTTAATTGCCACTCAGAACTTCAGTAAGGAAAATCTGCTGGGTGCAAGTGCATTTGGAGTTGTTTACAAAGGCATCCTCTCATCACATCCTCCTAAAATTGTTGCTGTCAAGAAGATTTCAGCAGCCTCCAAAAAAGGTGAAAGGGAGCACTTAGCAGAAATATGTACCATTGGGTGCCTAAGGCACAAGAACATAGTGCAACTACAAGGTTGGTGTCACGAATACATGCCTAATAGAAGCCTTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

112

Amino Acids

12.4

Weight (kDa)

9.3

Isoelectric Point (pI)

61.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 37 - 103 6.9e-08 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 39 - 104 8.5e-09 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0016269)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 261
AccIII TCCGGA 1 cut(s) 61
AcuI CTGAAG 1 cut(s) 91
AfaI GTAC 1 cut(s) 253
Alw21I GWGCWC 1 cut(s) 237
Aor13HI TCCGGA 1 cut(s) 61
ApeKI GCWGC 1 cut(s) 209
AsuHPI GGTGA 1 cut(s) 236
AxyI CCTNAGG 1 cut(s) 266
BanI GGYRCC 1 cut(s) 261
Bbv12I GWGCWC 1 cut(s) 237
BbvI GCAGC 1 cut(s) 221
BccI CCATC 1 cut(s) 11
BisI GCNGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 211
BmiI GGNNCC 1 cut(s) 263
BmsI GCATC 1 cut(s) 168
BsaJI CCNNGG 1 cut(s) 328
BsaWI WCCGGW 1 cut(s) 61
Bse1I ACTGG 1 cut(s) 37
Bse21I CCTNAGG 1 cut(s) 266
BseAI TCCGGA 1 cut(s) 61
BseDI CCNNGG 1 cut(s) 328
BseGI GGATG 3 cut(s) 22, 159, 172
BseMII CTCAG 1 cut(s) 113
BseNI ACTGG 1 cut(s) 37
BseXI GCAGC 1 cut(s) 221
BseYI CCCAGC 1 cut(s) 124
BshNI GGYRCC 1 cut(s) 261
BsiHKAI GWGCWC 1 cut(s) 237
BsiSI CCGG 1 cut(s) 62
Bsp1286I GDGCHC 1 cut(s) 237
Bsp13I TCCGGA 1 cut(s) 61
BspCNI CTCAG 1 cut(s) 112
BspEI TCCGGA 1 cut(s) 61
BspLI GGNNCC 1 cut(s) 263
BspT107I GGYRCC 1 cut(s) 261
BsrI ACTGG 1 cut(s) 37
BssECI CCNNGG 1 cut(s) 328
BssT1I CCWWGG 1 cut(s) 328
BstDEI CTNAG 3 cut(s) 99, 238, 266
BstF5I GGATG 3 cut(s) 22, 159, 172
BstNSI RCATGY 1 cut(s) 316
BstV1I GCAGC 1 cut(s) 221
Bsu36I CCTNAGG 1 cut(s) 266
BtsCI GGATG 3 cut(s) 22, 159, 172
Csp6I GTAC 1 cut(s) 252
CviAII CATG 1 cut(s) 313
CviJI RGCY 3 cut(s) 36, 212, 327
CviKI_1 RGCY 3 cut(s) 36, 212, 327
CviQI GTAC 1 cut(s) 252
DdeI CTNAG 3 cut(s) 99, 238, 266
Eco130I CCWWGG 1 cut(s) 328
Eco57I CTGAAG 1 cut(s) 91
Eco81I CCTNAGG 1 cut(s) 266
EcoT14I CCWWGG 1 cut(s) 328
ErhI CCWWGG 1 cut(s) 328
FaeI CATG 1 cut(s) 316
FaiI YATR 5 cut(s) 12, 29, 250, 281, 314
FatI CATG 1 cut(s) 312
Fnu4HI GCNGC 1 cut(s) 210
FokI GGATG 3 cut(s) 29, 146, 159
Fsp4HI GCNGC 1 cut(s) 210
GluI GCNGC 1 cut(s) 210
GsaI CCCAGC 1 cut(s) 128
HapII CCGG 1 cut(s) 62
Hin1II CATG 1 cut(s) 316
HpaII CCGG 1 cut(s) 62
HphI GGTGA 1 cut(s) 236
Hpy166II GTNNAC 2 cut(s) 72, 151
Hpy188I TCNGA 1 cut(s) 102
Hpy188III TCNNGA 4 cut(s) 42, 62, 196, 305
Hpy8I GTNNAC 2 cut(s) 72, 151
HpyCH4V TGCA 4 cut(s) 53, 131, 137, 286
HpyF3I CTNAG 3 cut(s) 99, 238, 266
Hsp92II CATG 1 cut(s) 316
Kpn2I TCCGGA 1 cut(s) 61
LmnI GCTCC 2 cut(s) 64, 232
LpnPI CCDG 3 cut(s) 50, 75, 110
Lsp1109I GCAGC 1 cut(s) 221
LweI GCATC 1 cut(s) 168
MaeIII GTNAC 1 cut(s) 302
MboII GAAGA 1 cut(s) 211
MhlI GDGCHC 1 cut(s) 237
MluCI AATT 2 cut(s) 90, 183
MnlI CCTC 4 cut(s) 16, 173, 186, 223
MroI TCCGGA 1 cut(s) 61
MseI TTAA 2 cut(s) 89, 334
MslI CAYNNNNRTG 1 cut(s) 15
MspI CCGG 1 cut(s) 62
NlaIII CATG 1 cut(s) 316
NlaIV GGNNCC 1 cut(s) 263
NmuCI GTSAC 1 cut(s) 302
NspI RCATGY 1 cut(s) 316
PkrI GCNGC 1 cut(s) 211
PspFI CCCAGC 1 cut(s) 124
PspN4I GGNNCC 1 cut(s) 263
RsaI GTAC 1 cut(s) 253
RsaNI GTAC 1 cut(s) 252
RseI CAYNNNNRTG 1 cut(s) 15
SaqAI TTAA 2 cut(s) 89, 334
SatI GCNGC 1 cut(s) 210
SduI GDGCHC 1 cut(s) 237
SetI ASST 2 cut(s) 226, 298
SfaNI GCATC 1 cut(s) 168
SmiMI CAYNNNNRTG 1 cut(s) 15
Sse9I AATT 2 cut(s) 90, 183
StyI CCWWGG 1 cut(s) 328
TasI AATT 2 cut(s) 90, 183
Tru1I TTAA 2 cut(s) 89, 334
Tru9I TTAA 2 cut(s) 89, 334
TseFI GTSAC 1 cut(s) 302
TseI GCWGC 1 cut(s) 209
Tsp45I GTSAC 1 cut(s) 302
XceI RCATGY 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.