MD08G1212600.v1.1

L-type lectin-domain containing receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0016269
Physical Location & Seq
Reverse (-)
27617366 .. 27617934
569 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1212600.v1.1.491

Sequence Viewer

Length: 402 bp
ATGCTGCTCGCGCGTAGGAATCCCGATATGCCTCAAAGGTATTTTTGTCATCTTTTATCAAAAATTCACGTGTCGTCTTGTAATTATTTTTGGCTCCACAATGGGGATGGTGAGGACATAGAAAGCCAGTCAAGAACAGCTGCAAATGCCCCAGAAATGTTCACTTACAAACAGCTTTTAGTTGCGACTCAGAACTTCAGTAAGGAAAATCTGTTGGGTGCAGGTGCATTTGGAGTTGTTTACAAAGGCATCCTTTCATCACATCCTCCTAAAATTGTTGCTATCAAGAAGATTTCAGCAACCTCCAAAAAAGGTGAAAGGGAGTACTTAGCAGAAATATGCACCATTGGCCGCCTAAGGCACAAGAACATTGTGCAACTACAAGGATGGTGTCATGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase

Protein Analysis

134

Amino Acids

15.06

Weight (kDa)

9.28

Isoelectric Point (pI)

55.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 67 - 132 5.7e-10 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 69 - 132 5e-10 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29290
malus_domestica MD08G1148700.v1.1 MD08G1148800.v1.1 MD08G1212600.v1.1 MD15G1124000.v1.1
prunus_persica Prupe.1G479400_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0298101
rosa_laevigata RLG00000011534
rosa_multiflora Rmu_sc0002800.1_g000004
rosa_rugosa Rorug06G0278900
rosa_samantha Rh6AG389000 Rh6BG397300 Rh6CG403200 Rh6DG389800
rosa_wichuraiana Rw6G033970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 212
Acc36I ACCTGC 1 cut(s) 212
AccII CGCG 2 cut(s) 11, 13
AciI CCGC 1 cut(s) 352
AcoI YGGCCR 1 cut(s) 349
AcsI RAATTY 1 cut(s) 63
AcuI CTGAAG 1 cut(s) 181
AcvI CACGTG 1 cut(s) 70
AfaI GTAC 1 cut(s) 326
AfiI CCNNNNNNNGG 1 cut(s) 103
AflIII ACRYGT 1 cut(s) 69
AluBI AGCT 2 cut(s) 140, 175
AluI AGCT 2 cut(s) 140, 175
AoxI GGCC 1 cut(s) 349
ApeKI GCWGC 2 cut(s) 4, 140
ApoI RAATTY 1 cut(s) 63
AspLEI GCGC 1 cut(s) 13
AsuHPI GGTGA 2 cut(s) 122, 326
AxyI CCTNAGG 1 cut(s) 356
BbrPI CACGTG 1 cut(s) 70
BbvI GCAGC 1 cut(s) 127
BccI CCATC 2 cut(s) 101, 381
BfuAI ACCTGC 1 cut(s) 212
BisI GCNGC 3 cut(s) 5, 141, 352
BlsI GCNGC 3 cut(s) 6, 142, 353
BmcAI AGTACT 1 cut(s) 326
BmiI GGNNCC 1 cut(s) 95
BmsI GCATC 1 cut(s) 258
BsaAI YACGTR 1 cut(s) 70
Bsc4I CCNNNNNNNGG 1 cut(s) 103
Bse1I ACTGG 1 cut(s) 127
Bse21I CCTNAGG 1 cut(s) 356
BseGI GGATG 4 cut(s) 112, 249, 262, 392
BseLI CCNNNNNNNGG 1 cut(s) 103
BseMII CTCAG 1 cut(s) 203
BseNI ACTGG 1 cut(s) 127
BseXI GCAGC 1 cut(s) 127
BsgI GTGCAG 1 cut(s) 240
Bsh1236I CGCG 2 cut(s) 11, 13
BshFI GGCC 1 cut(s) 351
BslI CCNNNNNNNGG 1 cut(s) 103
BsnI GGCC 1 cut(s) 351
BspACI CCGC 1 cut(s) 352
BspANI GGCC 1 cut(s) 351
BspCNI CTCAG 1 cut(s) 202
BspFNI CGCG 2 cut(s) 11, 13
BspHI TCATGA 1 cut(s) 394
BspLI GGNNCC 1 cut(s) 95
BspMI ACCTGC 1 cut(s) 212
BsrI ACTGG 1 cut(s) 127
BstBAI YACGTR 1 cut(s) 70
BstC8I GCNNGC 1 cut(s) 9
BstDEI CTNAG 3 cut(s) 189, 328, 356
BstF5I GGATG 4 cut(s) 112, 249, 262, 392
BstFNI CGCG 2 cut(s) 11, 13
BstHHI GCGC 1 cut(s) 13
BstMWI GCNNNNNNNGC 3 cut(s) 10, 146, 348
BstUI CGCG 2 cut(s) 11, 13
BstV1I GCAGC 1 cut(s) 127
Bsu36I CCTNAGG 1 cut(s) 356
BsuRI GGCC 1 cut(s) 351
BtsCI GGATG 4 cut(s) 112, 249, 262, 392
BveI ACCTGC 1 cut(s) 212
Cac8I GCNNGC 1 cut(s) 9
CciI TCATGA 1 cut(s) 394
CfoI GCGC 1 cut(s) 13
Csp6I GTAC 1 cut(s) 325
CviAII CATG 1 cut(s) 395
CviJI RGCY 5 cut(s) 94, 126, 140, 175, 351
CviKI_1 RGCY 5 cut(s) 94, 126, 140, 175, 351
CviQI GTAC 1 cut(s) 325
DdeI CTNAG 3 cut(s) 189, 328, 356
EaeI YGGCCR 1 cut(s) 349
Eco57I CTGAAG 1 cut(s) 181
Eco72I CACGTG 1 cut(s) 70
Eco81I CCTNAGG 1 cut(s) 356
FaeI CATG 1 cut(s) 398
FaiI YATR 4 cut(s) 29, 119, 340, 396
FalI AAGNNNNNCTT 2 cut(s) 237, 269
FatI CATG 1 cut(s) 394
Fnu4HI GCNGC 3 cut(s) 5, 141, 352
FokI GGATG 3 cut(s) 119, 236, 249
Fsp4HI GCNGC 3 cut(s) 5, 141, 352
GlaI GCGC 1 cut(s) 12
GluI GCNGC 3 cut(s) 5, 141, 352
HaeIII GGCC 1 cut(s) 351
HhaI GCGC 1 cut(s) 13
Hin1II CATG 1 cut(s) 398
Hin6I GCGC 1 cut(s) 11
HinP1I GCGC 1 cut(s) 11
HinfI GANTC 2 cut(s) 19, 187
HphI GGTGA 2 cut(s) 122, 326
Hpy166II GTNNAC 2 cut(s) 162, 241
Hpy188I TCNGA 1 cut(s) 192
Hpy188III TCNNGA 4 cut(s) 23, 132, 286, 395
Hpy8I GTNNAC 2 cut(s) 162, 241
HpyCH4IV ACGT 1 cut(s) 69
HpyCH4V TGCA 5 cut(s) 143, 221, 227, 342, 376
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 146, 348
HpyF3I CTNAG 3 cut(s) 189, 328, 356
HpySE526I ACGT 1 cut(s) 69
Hsp92II CATG 1 cut(s) 398
HspAI GCGC 1 cut(s) 11
LmnI GCTCC 1 cut(s) 99
LpnPI CCDG 3 cut(s) 140, 165, 207
Lsp1109I GCAGC 1 cut(s) 127
LweI GCATC 1 cut(s) 258
MaeII ACGT 1 cut(s) 69
MboII GAAGA 1 cut(s) 301
MluCI AATT 3 cut(s) 63, 82, 273
MlyI GAGTC 1 cut(s) 181
MnlI CCTC 4 cut(s) 42, 106, 276, 313
MspA1I CMGCKG 1 cut(s) 140
MvnI CGCG 2 cut(s) 11, 13
MwoI GCNNNNNNNGC 3 cut(s) 10, 146, 348
NlaIII CATG 1 cut(s) 398
NlaIV GGNNCC 1 cut(s) 95
PagI TCATGA 1 cut(s) 394
PaqCI CACCTGC 1 cut(s) 212
PfeI GAWTC 1 cut(s) 19
PkrI GCNGC 3 cut(s) 6, 142, 353
PleI GAGTC 1 cut(s) 181
PmaCI CACGTG 1 cut(s) 70
PmlI CACGTG 1 cut(s) 70
PpsI GAGTC 1 cut(s) 181
Ppu21I YACGTR 1 cut(s) 70
PspCI CACGTG 1 cut(s) 70
PspN4I GGNNCC 1 cut(s) 95
PvuII CAGCTG 1 cut(s) 140
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
SatI GCNGC 3 cut(s) 5, 141, 352
ScaI AGTACT 1 cut(s) 326
SchI GAGTC 1 cut(s) 181
SetI ASST 7 cut(s) 41, 72, 142, 177, 226, 305, 316
SfaNI GCATC 1 cut(s) 258
Sse9I AATT 3 cut(s) 63, 82, 273
SsiI CCGC 1 cut(s) 352
TaiI ACGT 1 cut(s) 72
TasI AATT 3 cut(s) 63, 82, 273
TatI WGTACW 1 cut(s) 324
TauI GCSGC 1 cut(s) 354
TfiI GAWTC 1 cut(s) 19
TseI GCWGC 2 cut(s) 4, 140
TspDTI ATGAA 1 cut(s) 246
XapI RAATTY 1 cut(s) 63
XcmI CCANNNNNNNNNTGG 1 cut(s) 104
ZrmI AGTACT 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.