Rorug06G0278900

L-type lectin-domain containing receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0016269
Physical Location & Seq
Reverse (-)
42632527 .. 42633411
885 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0278900.1

Sequence Viewer

Length: 465 bp
ATGGGCGCCCTTGCCTCCATAACTACTTGGTTGGCCTCGGCTTTGTCTTTGCAAGGGGAGGATGAACCTGTGGATTTCGGTGACCTAAGGAAGAAAAGAGAGGAGTTTGTGGCTAACAACACATACATGGTGGAAAGGCTTAATACTTGCAGAGCTTTCAATCATTACTCATTCATGGGTGCTTTTCAATCGATGTGGAGACTGAATGGAACGCTACAGTTGCATGAATGCCCAGAGGAGAGCGTGCCCCATGCAGTTGGTGGCGGATTCCAGGCCGGACGACAACATAAATGGAGCGACGGTGATGTGAAAGGGGTTGCGACCAGACTGCCGTCTTTGGTCTTTCGCGCCAACTCCTCAAGTCCATCATCTCTAGGTCTTTTGGAACCCATATTTCGGGGCATTGATGGTAAGGGAAGGAAGCCAGTGGTTTATCAGAAGAGGTTGAACAAAGAATCAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase

Protein Analysis

154

Amino Acids

17.12

Weight (kDa)

8.62

Isoelectric Point (pI)

54.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29290
malus_domestica MD08G1148700.v1.1 MD08G1148800.v1.1 MD08G1212600.v1.1 MD15G1124000.v1.1
prunus_persica Prupe.1G479400_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0298101
rosa_laevigata RLG00000011534
rosa_multiflora Rmu_sc0002800.1_g000004
rosa_rugosa Rorug06G0278900
rosa_samantha Rh6AG389000 Rh6BG397300 Rh6CG403200 Rh6DG389800
rosa_wichuraiana Rw6G033970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 5
AccII CGCG 1 cut(s) 348
AciI CCGC 1 cut(s) 264
AcyI GRCGYC 1 cut(s) 6
AfiI CCNNNNNNNGG 1 cut(s) 396
AgsI TTSAA 3 cut(s) 160, 188, 448
AjnI CCWGG 1 cut(s) 270
AluBI AGCT 1 cut(s) 155
AluI AGCT 1 cut(s) 155
Alw26I GTCTC 1 cut(s) 193
AoxI GGCC 2 cut(s) 33, 273
AspLEI GCGC 2 cut(s) 8, 350
AsuHPI GGTGA 2 cut(s) 92, 314
AxyI CCTNAGG 1 cut(s) 86
BaeGI GKGCMC 1 cut(s) 249
BanI GGYRCC 1 cut(s) 5
BccI CCATC 2 cut(s) 373, 401
BceAI ACGGC 1 cut(s) 316
BcgI CGANNNNNNTGC 2 cut(s) 310, 344
BciT130I CCWGG 1 cut(s) 272
BcoDI GTCTC 1 cut(s) 193
BfaI CTAG 1 cut(s) 374
BfmI CTRYAG 1 cut(s) 215
BfoI RGCGCY 1 cut(s) 9
Bme1390I CCNGG 1 cut(s) 272
BmiI GGNNCC 2 cut(s) 7, 387
BmrFI CCNGG 1 cut(s) 272
BoxI GACNNNNGTC 1 cut(s) 331
BpuEI CTTGAG 1 cut(s) 343
Bsa29I ATCGAT 1 cut(s) 191
BsaHI GRCGYC 1 cut(s) 6
BsaJI CCNNGG 1 cut(s) 36
BsaXI ACNNNNNCTCC 2 cut(s) 286, 316
Bsc4I CCNNNNNNNGG 1 cut(s) 396
Bse1I ACTGG 1 cut(s) 425
Bse21I CCTNAGG 1 cut(s) 86
BseBI CCWGG 1 cut(s) 272
BseCI ATCGAT 1 cut(s) 191
BseDI CCNNGG 1 cut(s) 36
BseGI GGATG 1 cut(s) 67
BseLI CCNNNNNNNGG 1 cut(s) 396
BseNI ACTGG 1 cut(s) 425
BseRI GAGGAG 3 cut(s) 116, 251, 346
BseSI GKGCMC 1 cut(s) 249
Bsh1236I CGCG 1 cut(s) 348
BshFI GGCC 2 cut(s) 35, 275
BshNI GGYRCC 1 cut(s) 5
BshVI ATCGAT 1 cut(s) 191
BsiSI CCGG 1 cut(s) 276
BslI CCNNNNNNNGG 1 cut(s) 396
BsmAI GTCTC 1 cut(s) 193
BsmI GAATGC 1 cut(s) 233
BsnI GGCC 2 cut(s) 35, 275
Bsp1286I GDGCHC 1 cut(s) 249
BspACI CCGC 1 cut(s) 264
BspANI GGCC 2 cut(s) 35, 275
BspDI ATCGAT 1 cut(s) 191
BspFNI CGCG 1 cut(s) 348
BspLI GGNNCC 2 cut(s) 7, 387
BspT107I GGYRCC 1 cut(s) 5
BsrI ACTGG 1 cut(s) 425
BssECI CCNNGG 1 cut(s) 36
BssNI GRCGYC 1 cut(s) 6
Bst2UI CCWGG 1 cut(s) 272
Bst4CI ACNGT 2 cut(s) 219, 302
Bst6I CTCTTC 1 cut(s) 434
BstACI GRCGYC 1 cut(s) 6
BstC8I GCNNGC 1 cut(s) 245
BstDEI CTNAG 1 cut(s) 86
BstEII GGTNACC 1 cut(s) 80
BstF5I GGATG 1 cut(s) 67
BstFNI CGCG 1 cut(s) 348
BstH2I RGCGCY 1 cut(s) 9
BstHHI GCGC 2 cut(s) 8, 350
BstMAI GTCTC 1 cut(s) 193
BstMWI GCNNNNNNNGC 1 cut(s) 220
BstNI CCWGG 1 cut(s) 272
BstPAI GACNNNNGTC 1 cut(s) 331
BstPI GGTNACC 1 cut(s) 80
BstSCI CCNGG 1 cut(s) 270
BstSFI CTRYAG 1 cut(s) 215
BstSLI GKGCMC 1 cut(s) 249
BstUI CGCG 1 cut(s) 348
BstXI CCANNNNNNTGG 1 cut(s) 257
Bsu15I ATCGAT 1 cut(s) 191
Bsu36I CCTNAGG 1 cut(s) 86
BsuRI GGCC 2 cut(s) 35, 275
BsuTUI ATCGAT 1 cut(s) 191
BtsCI GGATG 1 cut(s) 67
BtsIMutI CAGTG 1 cut(s) 432
Cac8I GCNNGC 1 cut(s) 245
CfoI GCGC 2 cut(s) 8, 350
ClaI ATCGAT 1 cut(s) 191
CspCI CAANNNNNGTGG 2 cut(s) 176, 211
CviAII CATG 4 cut(s) 127, 175, 224, 251
CviJI RGCY 7 cut(s) 35, 41, 113, 139, 155, 275, 424
CviKI_1 RGCY 7 cut(s) 35, 41, 113, 139, 155, 275, 424
DdeI CTNAG 1 cut(s) 86
DinI GGCGCC 1 cut(s) 7
Eam1104I CTCTTC 1 cut(s) 434
EarI CTCTTC 1 cut(s) 434
EciI GGCGGA 1 cut(s) 279
Eco81I CCTNAGG 1 cut(s) 86
Eco91I GGTNACC 1 cut(s) 80
EcoO65I GGTNACC 1 cut(s) 80
EcoRII CCWGG 1 cut(s) 270
EgeI GGCGCC 1 cut(s) 7
EheI GGCGCC 1 cut(s) 7
FaeI CATG 4 cut(s) 130, 178, 227, 254
FaiI YATR 8 cut(s) 20, 124, 128, 176, 225, 252, 288, 392
FatI CATG 4 cut(s) 126, 174, 223, 250
FokI GGATG 1 cut(s) 74
FspBI CTAG 1 cut(s) 374
GlaI GCGC 2 cut(s) 7, 349
HaeII RGCGCY 1 cut(s) 9
HaeIII GGCC 2 cut(s) 35, 275
HapII CCGG 1 cut(s) 276
HhaI GCGC 2 cut(s) 8, 350
Hin1I GRCGYC 1 cut(s) 6
Hin1II CATG 4 cut(s) 130, 178, 227, 254
Hin6I GCGC 2 cut(s) 6, 348
HinP1I GCGC 2 cut(s) 6, 348
HinfI GANTC 2 cut(s) 267, 455
HpaII CCGG 1 cut(s) 276
HphI GGTGA 2 cut(s) 92, 314
Hpy188I TCNGA 2 cut(s) 438, 460
Hpy99I CGWCG 1 cut(s) 302
HpyAV CCTTC 1 cut(s) 411
HpyCH4III ACNGT 2 cut(s) 219, 302
HpyCH4V TGCA 4 cut(s) 52, 150, 223, 254
HpyF10VI GCNNNNNNNGC 1 cut(s) 220
HpyF3I CTNAG 1 cut(s) 86
Hsp92I GRCGYC 1 cut(s) 6
Hsp92II CATG 4 cut(s) 130, 178, 227, 254
HspAI GCGC 2 cut(s) 6, 348
KasI GGCGCC 1 cut(s) 5
LmnI GCTCC 1 cut(s) 294
LpnPI CCDG 7 cut(s) 81, 246, 257, 284, 289, 337, 438
MaeI CTAG 1 cut(s) 374
MaeIII GTNAC 1 cut(s) 80
MboII GAAGA 2 cut(s) 103, 451
MhlI GDGCHC 1 cut(s) 249
Mly113I GGCGCC 1 cut(s) 6
MnlI CCTC 7 cut(s) 25, 46, 52, 94, 229, 367, 435
MseI TTAA 1 cut(s) 141
MslI CAYNNNNRTG 1 cut(s) 125
MspI CCGG 1 cut(s) 276
MspR9I CCNGG 1 cut(s) 272
Mva1269I GAATGC 1 cut(s) 233
MvaI CCWGG 1 cut(s) 272
MvnI CGCG 1 cut(s) 348
MwoI GCNNNNNNNGC 1 cut(s) 220
NarI GGCGCC 1 cut(s) 6
NlaIII CATG 4 cut(s) 130, 178, 227, 254
NlaIV GGNNCC 2 cut(s) 7, 387
NmeAIII GCCGAG 1 cut(s) 17
NmuCI GTSAC 1 cut(s) 80
PctI GAATGC 1 cut(s) 233
PfeI GAWTC 2 cut(s) 267, 455
PluTI GGCGCC 1 cut(s) 9
PshAI GACNNNNGTC 1 cut(s) 331
Psp6I CCWGG 1 cut(s) 270
PspEI GGTNACC 1 cut(s) 80
PspGI CCWGG 1 cut(s) 270
PspN4I GGNNCC 2 cut(s) 7, 387
RseI CAYNNNNRTG 1 cut(s) 125
SaqAI TTAA 1 cut(s) 141
ScrFI CCNGG 1 cut(s) 272
SduI GDGCHC 1 cut(s) 249
SetI ASST 5 cut(s) 70, 87, 157, 379, 446
SfcI CTRYAG 1 cut(s) 215
SfoI GGCGCC 1 cut(s) 7
SmiMI CAYNNNNRTG 1 cut(s) 125
SmlI CTYRAG 1 cut(s) 358
SmoI CTYRAG 1 cut(s) 358
SsiI CCGC 1 cut(s) 264
SspDI GGCGCC 1 cut(s) 5
SspMI CTAG 1 cut(s) 374
StyD4I CCNGG 1 cut(s) 270
TaaI ACNGT 2 cut(s) 219, 302
TaqI TCGA 1 cut(s) 191
TfiI GAWTC 2 cut(s) 267, 455
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TscAI CASTG 1 cut(s) 432
TseFI GTSAC 1 cut(s) 80
Tsp45I GTSAC 1 cut(s) 80
TspDTI ATGAA 3 cut(s) 78, 163, 240
TspRI CASTG 1 cut(s) 432
XcmI CCANNNNNNNNNTGG 1 cut(s) 257
XspI CTAG 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.