Rh6BG397300

L-type lectin-domain containing receptor kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Forward (+)
62536219 .. 62542974
6756 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG397300.1

Sequence Viewer

Length: 1092 bp
ATGGGATCAGTGACTTCAGGTGAAGGGTATTTGAGTCTCACACCAGAGCAACAAAAGAGCAACTCAAGTTCAGCATCGGTTTTACCGTTATACAAAGTTGGGAGGGTTCTGTATCGGTACCCAGTTCCGGCATGGTCTTCTTTTATCTCCACAACCTTCACTGTCAGGATTTCGGCTTTCTCAAATACAACTGGCTCTGGAGATGGAATGGCATTTGTTTTTGCTCAGGATAGTCGTCCTTCTCCTCCTGATAGCTATGGCTCATTTCTTGGACTCCTAGATAGATCAACACAAGGTGGGGTGATTAAGCAGTTGGGAATTGAGCTAGACACTTTCATGAACCATGAGTTTGATCCAGATGACAACCACATTGCCATTGACACAACAAGCATTATGGACCCAGTTGCAATACAGAGTCTCAACAGTTCAGGCATTAACCTCAAGAGTGGGAGAGACATCAAGTTCACAATTGAGTATAATGGTTGGAACCAAATCCTCCATGTTTCAGCTGGCTACTCTGAGAACCCACTAGTCACCATCTTAAACCATTCAATCTCCATGTTTGACAGTATTGTTCCGAGCTCCGTTTATGTTGGCTTCACAGCATCTACTGGAACTCTCCCTGAGAGCCACCAAGTCCGTGATTGGGTTTTCACCTCCCTTCAGTTGCCAAATCCTAGCCCTCCTGGGAATGACAAAGGGCGTAAGAGAAAGCCCAGGAACATTTGGACTGTTGATGTGCCTGTTTTTCTGTGTGTGTTGGTTTTGATGGCCTTCACTTACCCTTTCATTTTGAGAGTTGTGAAAAGAAACCACTGTGGTGGGAATGAGAGAGAAGACATAGAAAACAGGACAAGAACAGCTGCAAACTCCCCTAAAATGTTTACTTACAAGGAGATTTCAAGGGCCACTCAGGACTTCAGCAAGGAAAATCTGATTGGGGTTGGTGGATTTGGAGTTGTCTACAAAGGCATCATACCAGATAAGATGGATGTTCCTCCTAAAACTATTGCTGTCAAGAAGATTACAGCAACCTCCAAACAAGGCTTCCACTGGGCGTATTATGACTGGGCAAGCTTTGGCTTTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

363

Amino Acids

40.06

Weight (kDa)

8.36

Isoelectric Point (pI)

42.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 5 - 223 1.4e-38 Legume lectin domain
Lectin_L-type_dom PF18483 33 - 214 1.2e-15 Legume lectin beta-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0016269)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 117
AccB1I GGYRCC 1 cut(s) 117
AccI GTMKAC 1 cut(s) 963
AclWI GGATC 2 cut(s) 13, 347
AcuI CTGAAG 2 cut(s) 647, 904
AdeI CACNNNGTG 1 cut(s) 296
AfaI GTAC 1 cut(s) 119
AfiI CCNNNNNNNGG 2 cut(s) 127, 646
AgsI TTSAA 2 cut(s) 552, 903
AhlI ACTAGT 1 cut(s) 529
AjnI CCWGG 2 cut(s) 685, 716
AjuI GAANNNNNNNTTGG 4 cut(s) 921, 953, 1031, 1063
AleI CACNNNNGTG 1 cut(s) 819
AluBI AGCT 6 cut(s) 255, 325, 509, 582, 863, 1077
AluI AGCT 6 cut(s) 255, 325, 509, 582, 863, 1077
Alw21I GWGCWC 1 cut(s) 584
Alw26I GTCTC 3 cut(s) 41, 422, 447
AlwI GGATC 2 cut(s) 13, 347
AoxI GGCC 2 cut(s) 771, 906
ApeKI GCWGC 1 cut(s) 863
Asp718I GGTACC 1 cut(s) 117
AspS9I GGNCC 2 cut(s) 397, 906
AsuHPI GGTGA 4 cut(s) 32, 313, 526, 646
AvaII GGWCC 1 cut(s) 397
BanI GGYRCC 1 cut(s) 117
BanII GRGCYC 1 cut(s) 584
BbsI GAAGAC 2 cut(s) 129, 843
Bbv12I GWGCWC 1 cut(s) 584
BbvI GCAGC 1 cut(s) 850
BccI CCATC 4 cut(s) 197, 545, 763, 982
BciT130I CCWGG 2 cut(s) 687, 718
BcoDI GTCTC 3 cut(s) 41, 422, 447
BcuI ACTAGT 1 cut(s) 529
BfaI CTAG 4 cut(s) 278, 326, 530, 678
BisI GCNGC 1 cut(s) 864
BlsI GCNGC 1 cut(s) 865
Bme1390I CCNGG 2 cut(s) 687, 718
Bme18I GGWCC 1 cut(s) 397
BmgT120I GGNCC 2 cut(s) 397, 906
BmiI GGNNCC 3 cut(s) 119, 399, 488
BmrFI CCNGG 2 cut(s) 687, 718
BmrI ACTGGG 4 cut(s) 116, 395, 1063, 1078
BmsI GCATC 3 cut(s) 83, 614, 981
BmuI ACTGGG 4 cut(s) 116, 395, 1063, 1078
BpiI GAAGAC 2 cut(s) 129, 843
BpmI CTGGAG 1 cut(s) 219
Bpu10I CCTNAGC 1 cut(s) 225
BpuEI CTTGAG 2 cut(s) 49, 425
BsaJI CCNNGG 2 cut(s) 686, 716
Bsc4I CCNNNNNNNGG 2 cut(s) 127, 646
Bse1I ACTGG 6 cut(s) 122, 196, 401, 616, 1058, 1073
Bse3DI GCAATG 1 cut(s) 369
BseBI CCWGG 2 cut(s) 687, 718
BseDI CCNNGG 2 cut(s) 686, 716
BseGI GGATG 1 cut(s) 997
BseLI CCNNNNNNNGG 2 cut(s) 127, 646
BseMI GCAATG 1 cut(s) 369
BseMII CTCAG 4 cut(s) 239, 510, 615, 926
BseNI ACTGG 6 cut(s) 122, 196, 401, 616, 1058, 1073
BseRI GAGGAG 1 cut(s) 234
BseXI GCAGC 1 cut(s) 850
BshFI GGCC 2 cut(s) 773, 908
BshNI GGYRCC 1 cut(s) 117
BsiHKAI GWGCWC 1 cut(s) 584
BsiSI CCGG 1 cut(s) 128
BslI CCNNNNNNNGG 2 cut(s) 127, 646
BsmAI GTCTC 3 cut(s) 41, 422, 447
BsnI GGCC 2 cut(s) 773, 908
Bsp1286I GDGCHC 1 cut(s) 584
Bsp143I GATC 3 cut(s) 5, 284, 352
BspANI GGCC 2 cut(s) 773, 908
BspCNI CTCAG 4 cut(s) 238, 511, 616, 925
BspHI TCATGA 1 cut(s) 336
BspLI GGNNCC 3 cut(s) 119, 399, 488
BspPI GGATC 2 cut(s) 13, 347
BspT107I GGYRCC 1 cut(s) 117
BsrDI GCAATG 1 cut(s) 369
BsrI ACTGG 6 cut(s) 122, 196, 401, 616, 1058, 1073
BssECI CCNNGG 2 cut(s) 686, 716
BssMI GATC 3 cut(s) 5, 284, 352
Bst2UI CCWGG 2 cut(s) 687, 718
Bst4CI ACNGT 6 cut(s) 87, 163, 425, 569, 733, 818
BstC8I GCNNGC 2 cut(s) 511, 1075
BstDEI CTNAG 4 cut(s) 225, 519, 624, 912
BstF5I GGATG 1 cut(s) 997
BstKTI GATC 3 cut(s) 8, 287, 355
BstMAI GTCTC 3 cut(s) 41, 422, 447
BstMBI GATC 3 cut(s) 5, 284, 352
BstNI CCWGG 2 cut(s) 687, 718
BstSCI CCNGG 2 cut(s) 685, 716
BstV1I GCAGC 1 cut(s) 850
BstV2I GAAGAC 2 cut(s) 129, 843
BstXI CCANNNNNNTGG 1 cut(s) 821
BsuRI GGCC 2 cut(s) 773, 908
BtsCI GGATG 1 cut(s) 997
BtsIMutI CAGTG 4 cut(s) 15, 159, 814, 1051
Cac8I GCNNGC 2 cut(s) 511, 1075
CciI TCATGA 1 cut(s) 336
Cfr13I GGNCC 2 cut(s) 397, 906
Csp6I GTAC 1 cut(s) 118
CviAII CATG 6 cut(s) 132, 337, 344, 500, 559, 1089
CviQI GTAC 1 cut(s) 118
DdeI CTNAG 4 cut(s) 225, 519, 624, 912
DpnI GATC 3 cut(s) 7, 286, 354
DpnII GATC 3 cut(s) 5, 284, 352
DraIII CACNNNGTG 1 cut(s) 296
Ecl136II GAGCTC 1 cut(s) 582
Eco24I GRGCYC 1 cut(s) 584
Eco47I GGWCC 1 cut(s) 397
Eco53kI GAGCTC 1 cut(s) 582
Eco57I CTGAAG 2 cut(s) 647, 904
EcoICRI GAGCTC 1 cut(s) 582
EcoRII CCWGG 2 cut(s) 685, 716
EcoT38I GRGCYC 1 cut(s) 584
FaeI CATG 6 cut(s) 135, 340, 347, 503, 562, 1092
FatI CATG 6 cut(s) 131, 336, 343, 499, 558, 1088
FblI GTMKAC 1 cut(s) 963
Fnu4HI GCNGC 1 cut(s) 864
FokI GGATG 1 cut(s) 1004
FriOI GRGCYC 1 cut(s) 584
Fsp4HI GCNGC 1 cut(s) 864
FspBI CTAG 4 cut(s) 278, 326, 530, 678
GluI GCNGC 1 cut(s) 864
GsuI CTGGAG 1 cut(s) 219
HaeIII GGCC 2 cut(s) 773, 908
HapII CCGG 1 cut(s) 128
Hin1II CATG 6 cut(s) 135, 340, 347, 503, 562, 1092
HindIII AAGCTT 1 cut(s) 1075
HinfI GANTC 3 cut(s) 34, 273, 415
HpaII CCGG 1 cut(s) 128
HphI GGTGA 4 cut(s) 32, 313, 526, 646
Hpy166II GTNNAC 3 cut(s) 465, 885, 964
Hpy188I TCNGA 3 cut(s) 520, 579, 936
Hpy188III TCNNGA 9 cut(s) 166, 198, 227, 248, 337, 356, 442, 914, 1018
Hpy8I GTNNAC 3 cut(s) 465, 885, 964
HpyAV CCTTC 5 cut(s) 17, 166, 249, 671, 784
HpyCH4III ACNGT 6 cut(s) 87, 163, 425, 569, 733, 818
HpyCH4V TGCA 3 cut(s) 407, 866, 1088
HpyF3I CTNAG 4 cut(s) 225, 519, 624, 912
Hsp92II CATG 6 cut(s) 135, 340, 347, 503, 562, 1092
KpnI GGTACC 1 cut(s) 121
Kzo9I GATC 3 cut(s) 5, 284, 352
LmnI GCTCC 1 cut(s) 587
Lsp1109I GCAGC 1 cut(s) 850
LweI GCATC 3 cut(s) 83, 614, 981
MaeI CTAG 4 cut(s) 278, 326, 530, 678
MaeIII GTNAC 2 cut(s) 10, 532
MalI GATC 3 cut(s) 7, 286, 354
MboI GATC 3 cut(s) 5, 284, 352
MboII GAAGA 3 cut(s) 129, 848, 1033
MfeI CAATTG 1 cut(s) 468
MhlI GDGCHC 1 cut(s) 584
MluCI AATT 2 cut(s) 318, 468
MlyI GAGTC 3 cut(s) 43, 267, 424
MmeI TCCRAC 1 cut(s) 464
MnlI CCTC 8 cut(s) 96, 255, 449, 506, 667, 693, 1008, 1045
MseI TTAA 3 cut(s) 306, 435, 542
MslI CAYNNNNRTG 2 cut(s) 335, 819
MspA1I CMGCKG 2 cut(s) 509, 863
MspI CCGG 1 cut(s) 128
MspR9I CCNGG 2 cut(s) 687, 718
MunI CAATTG 1 cut(s) 468
MvaI CCWGG 2 cut(s) 687, 718
NdeII GATC 3 cut(s) 5, 284, 352
NlaIII CATG 6 cut(s) 135, 340, 347, 503, 562, 1092
NlaIV GGNNCC 3 cut(s) 119, 399, 488
NmuCI GTSAC 2 cut(s) 10, 532
OliI CACNNNNGTG 1 cut(s) 819
PagI TCATGA 1 cut(s) 336
PcsI WCGNNNNNNNCGW 1 cut(s) 83
PkrI GCNGC 1 cut(s) 865
PleI GAGTC 3 cut(s) 42, 267, 423
PpsI GAGTC 3 cut(s) 42, 267, 423
Psp124BI GAGCTC 1 cut(s) 584
Psp6I CCWGG 2 cut(s) 685, 716
PspGI CCWGG 2 cut(s) 685, 716
PspN4I GGNNCC 3 cut(s) 119, 399, 488
PspPI GGNCC 2 cut(s) 397, 906
PvuII CAGCTG 2 cut(s) 509, 863
RsaI GTAC 1 cut(s) 119
RsaNI GTAC 1 cut(s) 118
RseI CAYNNNNRTG 2 cut(s) 335, 819
SacI GAGCTC 1 cut(s) 584
SaqAI TTAA 3 cut(s) 306, 435, 542
SatI GCNGC 1 cut(s) 864
Sau3AI GATC 3 cut(s) 5, 284, 352
Sau96I GGNCC 2 cut(s) 397, 906
SchI GAGTC 3 cut(s) 43, 267, 424
ScrFI CCNGG 2 cut(s) 687, 718
SduI GDGCHC 1 cut(s) 584
SfaNI GCATC 3 cut(s) 83, 614, 981
SinI GGWCC 1 cut(s) 397
SmiMI CAYNNNNRTG 2 cut(s) 335, 819
SmlI CTYRAG 2 cut(s) 64, 440
SmoI CTYRAG 2 cut(s) 64, 440
SpeI ACTAGT 1 cut(s) 529
Sse9I AATT 2 cut(s) 318, 468
SspMI CTAG 4 cut(s) 278, 326, 530, 678
SstI GAGCTC 1 cut(s) 584
StyD4I CCNGG 2 cut(s) 685, 716
TaaI ACNGT 6 cut(s) 87, 163, 425, 569, 733, 818
TasI AATT 2 cut(s) 318, 468
Tru1I TTAA 3 cut(s) 306, 435, 542
Tru9I TTAA 3 cut(s) 306, 435, 542
TscAI CASTG 4 cut(s) 15, 166, 821, 1058
TseFI GTSAC 2 cut(s) 10, 532
TseI GCWGC 1 cut(s) 863
Tsp45I GTSAC 2 cut(s) 10, 532
TspDTI ATGAA 3 cut(s) 325, 353, 778
TspGWI ACGGA 2 cut(s) 574, 629
TspRI CASTG 4 cut(s) 15, 166, 821, 1058
VpaK11BI GGWCC 1 cut(s) 397
XcmI CCANNNNNNNNNTGG 2 cut(s) 129, 506
XmiI GTMKAC 1 cut(s) 963
XspI CTAG 4 cut(s) 278, 326, 530, 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.