Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0009897

Physical Location & Seq

Genomic Coordinates Reverse (-)

26867422 .. 26873713

Gene Structure 6292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1206900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

ATGGTGGTGAGGAAAGTGGGAAAGTATGAGGTTGGGAGGACGATCGGCGAAGGGACCTTCGCCAAGGTGAAGTTTGCTCAGAACACTGAGACGGGTGAGAGTGTCGCCATGAAAGTGCTGGATCGCACTACCATCATTAAACACAAGATGGTCGACCAGATCAAGAGGGAAATATCTATCATGAAGCTTGTCAGGCATCCCTACGTTGTTCGTCTGCATGAGGTTCTAGCGAGCCGTACTAAGATTTATATAATCTTGGAGTTCATTACTGGTGGTGAATTGTTTGATAAAATCGTTCATCATGGGCGACTAAGTGAAGGAGAAGCCAGGAGATACTTCCAACAGCTTATTGATGGGGTGGATTATTGCCACAGCAAGGGAGTATATCATAGAGACTTAAAGCCGGAGAATCTGTTGCTTGATTCTCTTGGAAATTTAAAAATTTCCGATTTTGGTCTGAGTGCATTGCCTGAGCAAGGAGTCAGCCTCCTTCGGACAACCTGTGGCACCCCTAACTATGTAGCACCTGAGGTACTCAGTCACAAGGGTTATGATGGTGCCGTGGCAGATGTTTGGTCCTGTGGGGTCATCCTTTATGTTCTGTTGGCAGGTTATCTTCCGTTTGATGAGCTTGACCTAACCACACTATATACTCAGTTACCACCACAATATGATAACATTGAAGGGATTGAGAAAGCAGACTACACATGCCCATTTTGGTTTCCAGTGGGAGCAAAATCCTTGATTCACAGAATTTTAGAAACAAACCCTGAAAATCGTATTAAAATTGAACAGATCAGAAATGATGAGTGGTTTCAGAAGAATTATGTTCCTGCCCGATTACTTGAATATGAAGATGTAAATCTGGATGATGTGAATGCTGTTTTTGATGATGCCGACTCTGAGCAGGAACAAAGGGCTATCGAGCACCACGGAAATGAAGACATGGGTCCTTTAGTTCTTAATGCATTTGACTTAATAATTTTATCTCAAGGCTTAAACCTCGCAACAATGTTTGACCGTGGAAAGGATTCTATGAAATATCAAACGCGCTTTGTTTCACAAAAGCCAGCAAGGGTTGTATTATCCAGTATGGAAGTTGTTGCCCAATCAATGGGATTCAAGACACACATTCGCAACTATAAGATGAGAGTGGAGGGTCTTTCAGCAAATAAAACTTCTCATTTCTCCATTATTCTTGAAATTTTTGAAGTTGCTCCGACCTATTACATGGTAGACATTCAGAAAGCCGCCGGAGATGCTAGTGAATTCCTCAAGTTTTACAAGAACTTCTGTAGCAATCTTGAGGATATCATCTGGAAACCTCCTACTGAAACTAGCAAGTCGAGGATCAGCAAGAGTAAAAGTAAGAAGCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0010033 GO:0010035 GO:0010167 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022622 GO:0023052 GO:0032501 GO:0032502 GO:0034284 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

460

Amino Acids

52.34

Weight (kDa)

6.52

Isoelectric Point (pI)

37.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	9 - 272	1.8e-73	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	11 - 268	1e-35	Protein tyrosine and serine/threonine kinase
NAF	PF03822	318 - 376	9.1e-17	NAF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26980 AT4G24400 AT4G24400
fragaria_vesca	FvH4_5g33970 FvH4_5g33970 FvH4_5g33970
malus_domestica	MD08G1206900.v1.1 MD15G1390800.v1.1
prunus_persica	Prupe.1G539600_v2.0.a1 Prupe.1G539600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0233351
rosa_laevigata	RLG00000001276
rosa_multiflora	Rmu_sc0001736.1_g000001 Rmu_sc0008806.1_g000004
rosa_roxburghii	Rroxscaffold_3G00227350
rosa_rugosa	Rorug07G0280200
rosa_samantha	Rh7AG436000 Rh7BG408900 Rh7CG455300 Rh7DG425100
rosa_wichuraiana	Rw7G035870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	599
AccB1I	GGYRCC	2 cut(s)	506, 557
AccB7I	CCANNNNNTGG	1 cut(s)	1114
AccI	GTMKAC	2 cut(s)	153, 1236
AccII	CGCG	1 cut(s)	1051
AciI	CCGC	1 cut(s)	1251
AclWI	GGATC	2 cut(s)	129, 1358
AcsI	RAATTY	5 cut(s)	433, 441, 753, 1203, 1268
AfaI	GTAC	2 cut(s)	238, 534
AfeI	AGCGCT	1 cut(s)	1376
AfiI	CCNNNNNNNGG	4 cut(s)	376, 476, 1027, 1114
AgsI	TTSAA	6 cut(s)	683, 791, 848, 1123, 1202, 1211
AjnI	CCWGG	1 cut(s)	326
AluBI	AGCT	3 cut(s)	187, 346, 631
AluI	AGCT	3 cut(s)	187, 346, 631
Alw21I	GWGCWC	1 cut(s)	930
Alw26I	GTCTC	2 cut(s)	83, 387
AlwI	GGATC	2 cut(s)	129, 1358
Aor51HI	AGCGCT	1 cut(s)	1376
ApoI	RAATTY	5 cut(s)	433, 441, 753, 1203, 1268
Asp700I	GAANNNNTTC	1 cut(s)	1030
AspLEI	GCGC	2 cut(s)	1053, 1377
AspS9I	GGNCC	3 cut(s)	54, 576, 950
AsuHPI	GGTGA	4 cut(s)	19, 79, 107, 287
AvaII	GGWCC	3 cut(s)	54, 576, 950
AxyI	CCTNAGG	1 cut(s)	528
BanI	GGYRCC	2 cut(s)	506, 557
BbsI	GAAGAC	1 cut(s)	948
Bbv12I	GWGCWC	1 cut(s)	930
BccI	CCATC	4 cut(s)	140, 142, 347, 548
BceAI	ACGGC	2 cut(s)	219, 545
BciT130I	CCWGG	1 cut(s)	328
BcoDI	GTCTC	2 cut(s)	83, 387
BfaI	CTAG	3 cut(s)	227, 1263, 1338
BfmI	CTRYAG	1 cut(s)	1294
BfoI	RGCGCY	1 cut(s)	1378
BfuAI	ACCTGC	1 cut(s)	599
BisI	GCNGC	1 cut(s)	1251
BlsI	GCNGC	1 cut(s)	1252
Bme1390I	CCNGG	1 cut(s)	328
Bme18I	GGWCC	3 cut(s)	54, 576, 950
BmgT120I	GGNCC	3 cut(s)	54, 576, 950
BmiI	GGNNCC	4 cut(s)	55, 508, 559, 951
BmrFI	CCNGG	1 cut(s)	328
BmsI	GCATC	3 cut(s)	205, 883, 1249
BoxI	GACNNNNGTC	1 cut(s)	948
BpiI	GAAGAC	1 cut(s)	948
BplI	GAGNNNNNCTC	2 cut(s)	471, 503
Bpu10I	CCTNAGC	1 cut(s)	471
BpuEI	CTTGAG	3 cut(s)	975, 1259, 1325
BsaBI	GATNNNNATC	1 cut(s)	861
BsaJI	CCNNGG	4 cut(s)	63, 561, 931, 1021
BsaXI	ACNNNNNCTCC	2 cut(s)	398, 428
Bsc4I	CCNNNNNNNGG	4 cut(s)	376, 476, 1027, 1114
Bse1I	ACTGG	3 cut(s)	274, 725, 1089
Bse21I	CCTNAGG	1 cut(s)	528
Bse3DI	GCAATG	1 cut(s)	464
Bse8I	GATNNNNATC	1 cut(s)	861
BseBI	CCWGG	1 cut(s)	328
BseDI	CCNNGG	4 cut(s)	63, 561, 931, 1021
BseGI	GGATG	3 cut(s)	196, 588, 874
BseJI	GATNNNNATC	1 cut(s)	861
BseLI	CCNNNNNNNGG	4 cut(s)	376, 476, 1027, 1114
BseMI	GCAATG	1 cut(s)	464
BseMII	CTCAG	8 cut(s)	78, 92, 449, 462, 519, 550, 668, 894
BseNI	ACTGG	3 cut(s)	274, 725, 1089
Bsh1236I	CGCG	1 cut(s)	1051
Bsh1285I	CGRYCG	1 cut(s)	45
BshNI	GGYRCC	2 cut(s)	506, 557
BsiEI	CGRYCG	1 cut(s)	45
BsiHKAI	GWGCWC	1 cut(s)	930
BsiSI	CCGG	2 cut(s)	404, 1254
BslFI	GGGAC	1 cut(s)	67
BslI	CCNNNNNNNGG	4 cut(s)	376, 476, 1027, 1114
BsmAI	GTCTC	2 cut(s)	83, 387
BsmBI	CGTCTC	1 cut(s)	83
BsmFI	GGGAC	1 cut(s)	67
BsmI	GAATGC	1 cut(s)	883
Bsp1286I	GDGCHC	1 cut(s)	930
Bsp143I	GATC	5 cut(s)	42, 121, 159, 795, 1350
BspACI	CCGC	1 cut(s)	1251
BspCNI	CTCAG	8 cut(s)	79, 91, 450, 463, 520, 549, 667, 895
BspFNI	CGCG	1 cut(s)	1051
BspHI	TCATGA	1 cut(s)	180
BspLI	GGNNCC	4 cut(s)	55, 508, 559, 951
BspMI	ACCTGC	1 cut(s)	599
BspPI	GGATC	2 cut(s)	129, 1358
BspT107I	GGYRCC	2 cut(s)	506, 557
BsrDI	GCAATG	1 cut(s)	464
BsrI	ACTGG	3 cut(s)	274, 725, 1089
BssECI	CCNNGG	4 cut(s)	63, 561, 931, 1021
BssMI	GATC	5 cut(s)	42, 121, 159, 795, 1350
BssT1I	CCWWGG	1 cut(s)	63
Bst2UI	CCWGG	1 cut(s)	328
Bst4CI	ACNGT	1 cut(s)	1022
BstC8I	GCNNGC	2 cut(s)	232, 1071
BstDSI	CCRYGG	3 cut(s)	561, 931, 1021
BstENI	CCTNNNNNAGG	1 cut(s)	474
BstF5I	GGATG	3 cut(s)	196, 588, 874
BstFNI	CGCG	1 cut(s)	1051
BstH2I	RGCGCY	1 cut(s)	1378
BstHHI	GCGC	2 cut(s)	1053, 1377
BstKTI	GATC	5 cut(s)	45, 124, 162, 798, 1353
BstMAI	GTCTC	2 cut(s)	83, 387
BstMBI	GATC	5 cut(s)	42, 121, 159, 795, 1350
BstMCI	CGRYCG	1 cut(s)	45
BstMWI	GCNNNNNNNGC	2 cut(s)	193, 1259
BstNI	CCWGG	1 cut(s)	328
BstNSI	RCATGY	1 cut(s)	711
BstPAI	GACNNNNGTC	1 cut(s)	948
BstSCI	CCNGG	1 cut(s)	326
BstSFI	CTRYAG	1 cut(s)	1294
BstUI	CGCG	1 cut(s)	1051
BstV2I	GAAGAC	1 cut(s)	948
Bsu36I	CCTNAGG	1 cut(s)	528
BtgI	CCRYGG	3 cut(s)	561, 931, 1021
BtsCI	GGATG	3 cut(s)	196, 588, 874
BtsIMutI	CAGTG	2 cut(s)	84, 732
BveI	ACCTGC	1 cut(s)	599
Cac8I	GCNNGC	2 cut(s)	232, 1071
CciI	TCATGA	1 cut(s)	180
CfoI	GCGC	2 cut(s)	1053, 1377
Cfr13I	GGNCC	3 cut(s)	54, 576, 950
Csp6I	GTAC	2 cut(s)	237, 533
CviAII	CATG	7 cut(s)	109, 181, 218, 302, 708, 946, 1231
CviQI	GTAC	2 cut(s)	237, 533
DpnI	GATC	5 cut(s)	44, 123, 161, 797, 1352
DpnII	GATC	5 cut(s)	42, 121, 159, 795, 1350
DraI	TTTAAA	1 cut(s)	438
Eco130I	CCWWGG	1 cut(s)	63
Eco32I	GATATC	1 cut(s)	1312
Eco47I	GGWCC	3 cut(s)	54, 576, 950
Eco47III	AGCGCT	1 cut(s)	1376
Eco81I	CCTNAGG	1 cut(s)	528
EcoNI	CCTNNNNNAGG	1 cut(s)	474
EcoO109I	RGGNCCY	2 cut(s)	54, 950
EcoRI	GAATTC	1 cut(s)	1268
EcoRII	CCWGG	1 cut(s)	326
EcoRV	GATATC	1 cut(s)	1312
EcoT14I	CCWWGG	1 cut(s)	63
EcoT22I	ATGCAT	1 cut(s)	970
ErhI	CCWWGG	1 cut(s)	63
Esp3I	CGTCTC	1 cut(s)	83
FaeI	CATG	7 cut(s)	112, 184, 221, 305, 711, 949, 1234
FaqI	GGGAC	1 cut(s)	67
FatI	CATG	7 cut(s)	108, 180, 217, 301, 707, 945, 1230
FblI	GTMKAC	2 cut(s)	153, 1236
Fnu4HI	GCNGC	1 cut(s)	1251
FokI	GGATG	3 cut(s)	183, 575, 881
Fsp4HI	GCNGC	1 cut(s)	1251
FspBI	CTAG	3 cut(s)	227, 1263, 1338
GlaI	GCGC	2 cut(s)	1052, 1376
GluI	GCNGC	1 cut(s)	1251
HaeII	RGCGCY	1 cut(s)	1378
HapII	CCGG	2 cut(s)	404, 1254
HhaI	GCGC	2 cut(s)	1053, 1377
Hin1II	CATG	7 cut(s)	112, 184, 221, 305, 711, 949, 1234
Hin6I	GCGC	2 cut(s)	1051, 1375
HinP1I	GCGC	2 cut(s)	1051, 1375
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	7 cut(s)	409, 422, 480, 745, 899, 1031, 1119
HpaII	CCGG	2 cut(s)	404, 1254
HphI	GGTGA	4 cut(s)	19, 79, 107, 287
Hpy166II	GTNNAC	2 cut(s)	154, 1237
Hpy188I	TCNGA	9 cut(s)	81, 448, 459, 495, 800, 819, 904, 1221, 1245
Hpy188III	TCNNGA	7 cut(s)	163, 181, 866, 1123, 1199, 1304, 1318
Hpy8I	GTNNAC	2 cut(s)	154, 1237
HpyAV	CCTTC	5 cut(s)	44, 67, 311, 500, 677
HpyCH4III	ACNGT	1 cut(s)	1022
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	3 cut(s)	217, 464, 968
HpyF10VI	GCNNNNNNNGC	2 cut(s)	193, 1259
HpySE526I	ACGT	1 cut(s)	204
Hsp92II	CATG	7 cut(s)	112, 184, 221, 305, 711, 949, 1234
HspAI	GCGC	2 cut(s)	1051, 1375
Kzo9I	GATC	5 cut(s)	42, 121, 159, 795, 1350
LmnI	GCTCC	2 cut(s)	731, 1222
LweI	GCATC	3 cut(s)	205, 883, 1249
MaeI	CTAG	3 cut(s)	227, 1263, 1338
MaeII	ACGT	1 cut(s)	204
MaeIII	GTNAC	2 cut(s)	539, 657
MalI	GATC	5 cut(s)	44, 123, 161, 797, 1352
MboI	GATC	5 cut(s)	42, 121, 159, 795, 1350
MboII	GAAGA	4 cut(s)	608, 832, 866, 953
MhlI	GDGCHC	1 cut(s)	930
MluCI	AATT	9 cut(s)	278, 433, 441, 753, 786, 823, 981, 1203, 1268
MlyI	GAGTC	2 cut(s)	489, 893
MmeI	TCCRAC	2 cut(s)	364, 1244
Mph1103I	ATGCAT	1 cut(s)	970
MroXI	GAANNNNTTC	1 cut(s)	1030
MseI	TTAA	7 cut(s)	138, 398, 437, 783, 963, 977, 998
MslI	CAYNNNNRTG	2 cut(s)	113, 936
MspI	CCGG	2 cut(s)	404, 1254
MspR9I	CCNGG	1 cut(s)	328
Mva1269I	GAATGC	1 cut(s)	883
MvaI	CCWGG	1 cut(s)	328
MvnI	CGCG	1 cut(s)	1051
MwoI	GCNNNNNNNGC	2 cut(s)	193, 1259
NdeII	GATC	5 cut(s)	42, 121, 159, 795, 1350
NlaIII	CATG	7 cut(s)	112, 184, 221, 305, 711, 949, 1234
NlaIV	GGNNCC	4 cut(s)	55, 508, 559, 951
NmuCI	GTSAC	1 cut(s)	539
NsiI	ATGCAT	1 cut(s)	970
NspI	RCATGY	1 cut(s)	711
PagI	TCATGA	1 cut(s)	180
PctI	GAATGC	1 cut(s)	883
PdmI	GAANNNNTTC	1 cut(s)	1030
PfeI	GAWTC	5 cut(s)	409, 422, 745, 1031, 1119
PflMI	CCANNNNNTGG	1 cut(s)	1114
PkrI	GCNGC	1 cut(s)	1252
Ple19I	CGATCG	1 cut(s)	45
PleI	GAGTC	2 cut(s)	488, 893
PpsI	GAGTC	2 cut(s)	488, 893
PpuMI	RGGWCCY	2 cut(s)	54, 950
PshAI	GACNNNNGTC	1 cut(s)	948
Psp5II	RGGWCCY	2 cut(s)	54, 950
Psp6I	CCWGG	1 cut(s)	326
PspGI	CCWGG	1 cut(s)	326
PspN4I	GGNNCC	4 cut(s)	55, 508, 559, 951
PspPI	GGNCC	3 cut(s)	54, 576, 950
PspPPI	RGGWCCY	2 cut(s)	54, 950
PvuI	CGATCG	1 cut(s)	45
RsaI	GTAC	2 cut(s)	238, 534
RsaNI	GTAC	2 cut(s)	237, 533
RseI	CAYNNNNRTG	2 cut(s)	113, 936
SalI	GTCGAC	1 cut(s)	152
SaqAI	TTAA	7 cut(s)	138, 398, 437, 783, 963, 977, 998
SatI	GCNGC	1 cut(s)	1251
Sau3AI	GATC	5 cut(s)	42, 121, 159, 795, 1350
Sau96I	GGNCC	3 cut(s)	54, 576, 950
SchI	GAGTC	2 cut(s)	489, 893
ScrFI	CCNGG	1 cut(s)	328
SduI	GDGCHC	1 cut(s)	930
SfaNI	GCATC	3 cut(s)	205, 883, 1249
SfcI	CTRYAG	1 cut(s)	1294
SinI	GGWCC	3 cut(s)	54, 576, 950
SmiMI	CAYNNNNRTG	2 cut(s)	113, 936
SmlI	CTYRAG	3 cut(s)	990, 1274, 1304
SmoI	CTYRAG	3 cut(s)	990, 1274, 1304
Sse9I	AATT	9 cut(s)	278, 433, 441, 753, 786, 823, 981, 1203, 1268
SsiI	CCGC	1 cut(s)	1251
SspMI	CTAG	3 cut(s)	227, 1263, 1338
StyD4I	CCNGG	1 cut(s)	326
StyI	CCWWGG	1 cut(s)	63
TaaI	ACNGT	1 cut(s)	1022
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	3 cut(s)	153, 924, 1346
TasI	AATT	9 cut(s)	278, 433, 441, 753, 786, 823, 981, 1203, 1268
TauI	GCSGC	1 cut(s)	1253
TfiI	GAWTC	5 cut(s)	409, 422, 745, 1031, 1119
Tru1I	TTAA	7 cut(s)	138, 398, 437, 783, 963, 977, 998
Tru9I	TTAA	7 cut(s)	138, 398, 437, 783, 963, 977, 998
TscAI	CASTG	2 cut(s)	91, 732
TseFI	GTSAC	1 cut(s)	539
Tsp45I	GTSAC	1 cut(s)	539
TspDTI	ATGAA	7 cut(s)	125, 197, 253, 287, 867, 954, 1052
TspGWI	ACGGA	2 cut(s)	609, 948
TspRI	CASTG	2 cut(s)	91, 732
Van91I	CCANNNNNTGG	1 cut(s)	1114
VpaK11BI	GGWCC	3 cut(s)	54, 576, 950
XagI	CCTNNNNNAGG	1 cut(s)	474
XapI	RAATTY	5 cut(s)	433, 441, 753, 1203, 1268
XceI	RCATGY	1 cut(s)	711
XcmI	CCANNNNNNNNNTGG	1 cut(s)	115
XmiI	GTMKAC	2 cut(s)	153, 1236
XmnI	GAANNNNTTC	1 cut(s)	1030
XspI	CTAG	3 cut(s)	227, 1263, 1338
Zsp2I	ATGCAT	1 cut(s)	970

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.