Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008806.1

Orthogroup ID

OG0009897

Physical Location & Seq

Genomic Coordinates Forward (+)

12056 .. 17937

Gene Structure 5882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008806.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

atggtggtcaggaaagtgggtaagtatgaaattgggaggacgatcggcgaaggaacctttgcgaaggtgaagtttgctcagaacactgagaccggtgagagtgtggccatgaagataatcgatcggagttccatcatcaagcacaagatggtcgaccagatcaagagggagatatccataatgaagcttgtgaggcatccctatgtagttcgtttgcacgaggttctagcgagtcggaccaagatttatataatattggagttcattacgggtggtgaattgtttgataaaatcgttcatcacggacgtcttagcgaagctgaagccaggagattcttccaacagcttattgatggagcgccttcttctgagttagtcctcagtcacaagggttatgatggtgccgtggcagatgtttggtcctgtggggtcatcctttatgttctcatggctggatatcttccatttgatgagcttgacctgaccacactatatagtaagattgagaaagcacagttctcatgcccaacttggtttccagtgggagcaaaatccttgattcatagcattctggatccaaatcctgcaactcgtattacgattgaacagatcagaaatgatgagtggtttcagaaaaattatgttgctcccaaaatattagaatatgaagatgtcaatctggatgatgtaaatgctgtcttcgatgagaccgaggaacaaagggatagcgagcaccagagcaatgaggacatgagtcctttagttcttaatgcatttgacttgatcatcttatctcaaggcctaaacctttcaacaatgtttgaccgtggcaaggattgtatgaagtatcagacacgctttgtctcacaaaagccagcaaaggtcgtactatcaagtatggaagttgttgcccaatcaatgggtttcaagacacacattcgtaactataagatgcgagtggagggtctttcggcaaataaaacttctcatttctccattattctcgaaatctttgaactcgctccaacctattacatggtagacattcagaaagctgctggagatgctagtgaattcctcaagttttacaagaacttttgtagcaatcttgaggatatcatttggaaaccgcctactgaatctagcaaatcgaaaatcagcaagagtaaaagtaaaaagcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0010033 GO:0010035 GO:0010167 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022622 GO:0023052 GO:0032501 GO:0032502 GO:0034284 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

394

Amino Acids

44.93

Weight (kDa)

7.18

Isoelectric Point (pI)

44.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26980 AT4G24400 AT4G24400
fragaria_vesca	FvH4_5g33970 FvH4_5g33970 FvH4_5g33970
malus_domestica	MD08G1206900.v1.1 MD15G1390800.v1.1
prunus_persica	Prupe.1G539600_v2.0.a1 Prupe.1G539600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0233351
rosa_laevigata	RLG00000001276
rosa_multiflora	Rmu_sc0001736.1_g000001 Rmu_sc0008806.1_g000004
rosa_roxburghii	Rroxscaffold_3G00227350
rosa_rugosa	Rorug07G0280200
rosa_samantha	Rh7AG436000 Rh7BG408900 Rh7CG455300 Rh7DG425100
rosa_wichuraiana	Rw7G035870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	310
AccB1I	GGYRCC	1 cut(s)	401
AccB7I	CCANNNNNTGG	1 cut(s)	919
AccI	GTMKAC	2 cut(s)	153, 1041
AciI	CCGC	1 cut(s)	1130
AclWI	GGATC	2 cut(s)	569, 582
AcoI	YGGCCR	1 cut(s)	105
AcsI	RAATTY	1 cut(s)	1073
AcuI	CTGAAG	1 cut(s)	342
AcyI	GRCGYC	1 cut(s)	307
AfaI	GTAC	1 cut(s)	888
AfiI	CCNNNNNNNGG	2 cut(s)	832, 919
AgeI	ACCGGT	1 cut(s)	92
AgsI	TTSAA	4 cut(s)	605, 813, 928, 1016
AjnI	CCWGG	1 cut(s)	326
AluBI	AGCT	5 cut(s)	187, 320, 346, 475, 1055
AluI	AGCT	5 cut(s)	187, 320, 346, 475, 1055
Alw21I	GWGCWC	1 cut(s)	735
Alw26I	GTCTC	3 cut(s)	83, 701, 868
AlwI	GGATC	2 cut(s)	569, 582
AoxI	GGCC	2 cut(s)	105, 799
ApeKI	GCWGC	1 cut(s)	1055
ApoI	RAATTY	1 cut(s)	1073
AsiGI	ACCGGT	1 cut(s)	92
AspLEI	GCGC	1 cut(s)	361
AspS9I	GGNCC	2 cut(s)	237, 420
AsuHPI	GGTGA	3 cut(s)	79, 107, 287
AvaII	GGWCC	2 cut(s)	237, 420
BalI	TGGCCA	1 cut(s)	107
BamHI	GGATCC	1 cut(s)	574
BanI	GGYRCC	1 cut(s)	401
BauI	CACGAG	1 cut(s)	218
BbsI	GAAGAC	1 cut(s)	691
Bbv12I	GWGCWC	1 cut(s)	735
BbvI	GCAGC	1 cut(s)	1042
BccI	CCATC	4 cut(s)	140, 142, 347, 392
BceAI	ACGGC	1 cut(s)	389
BciT130I	CCWGG	1 cut(s)	328
BclI	TGATCA	1 cut(s)	783
BcoDI	GTCTC	3 cut(s)	83, 701, 868
BfaI	CTAG	3 cut(s)	227, 1068, 1143
BfoI	RGCGCY	1 cut(s)	362
BisI	GCNGC	1 cut(s)	1056
BlsI	GCNGC	1 cut(s)	1057
Bme1390I	CCNGG	1 cut(s)	328
Bme18I	GGWCC	2 cut(s)	237, 420
BmgT120I	GGNCC	2 cut(s)	237, 420
BmiI	GGNNCC	3 cut(s)	55, 403, 576
BmrFI	CCNGG	1 cut(s)	328
BmsI	GCATC	3 cut(s)	205, 942, 1054
BoxI	GACNNNNGTC	1 cut(s)	753
BpiI	GAAGAC	1 cut(s)	691
BpmI	CTGGAG	1 cut(s)	1080
BpuEI	CTTGAG	3 cut(s)	780, 1064, 1130
Bsa29I	ATCGAT	1 cut(s)	120
BsaBI	GATNNNNATC	2 cut(s)	579, 675
BsaHI	GRCGYC	1 cut(s)	307
BsaI	GGTCTC	2 cut(s)	83, 701
BsaJI	CCNNGG	3 cut(s)	405, 711, 826
BsaWI	WCCGGW	1 cut(s)	92
Bsc4I	CCNNNNNNNGG	2 cut(s)	832, 919
Bse118I	RCCGGY	1 cut(s)	92
Bse1I	ACTGG	1 cut(s)	539
Bse3DI	GCAATG	1 cut(s)	748
Bse8I	GATNNNNATC	2 cut(s)	579, 675
BseBI	CCWGG	1 cut(s)	328
BseCI	ATCGAT	1 cut(s)	120
BseDI	CCNNGG	3 cut(s)	405, 711, 826
BseGI	GGATG	3 cut(s)	196, 432, 688
BseJI	GATNNNNATC	2 cut(s)	579, 675
BseLI	CCNNNNNNNGG	2 cut(s)	832, 919
BseMI	GCAATG	1 cut(s)	748
BseMII	CTCAG	4 cut(s)	78, 92, 360, 394
BseNI	ACTGG	1 cut(s)	539
BseXI	GCAGC	1 cut(s)	1042
Bsh1285I	CGRYCG	2 cut(s)	45, 124
BshFI	GGCC	2 cut(s)	107, 801
BshNI	GGYRCC	1 cut(s)	401
BshTI	ACCGGT	1 cut(s)	92
BshVI	ATCGAT	1 cut(s)	120
BsiEI	CGRYCG	2 cut(s)	45, 124
BsiHKAI	GWGCWC	1 cut(s)	735
BsiSI	CCGG	1 cut(s)	93
BslI	CCNNNNNNNGG	2 cut(s)	832, 919
BsmAI	GTCTC	3 cut(s)	83, 701, 868
BsmI	GAATGC	1 cut(s)	567
BsnI	GGCC	2 cut(s)	107, 801
Bso31I	GGTCTC	2 cut(s)	83, 701
Bsp1286I	GDGCHC	1 cut(s)	735
Bsp143I	GATC	6 cut(s)	42, 121, 159, 574, 609, 783
BspACI	CCGC	1 cut(s)	1130
BspANI	GGCC	2 cut(s)	107, 801
BspCNI	CTCAG	4 cut(s)	79, 91, 361, 393
BspDI	ATCGAT	1 cut(s)	120
BspLI	GGNNCC	3 cut(s)	55, 403, 576
BspPI	GGATC	2 cut(s)	569, 582
BspT107I	GGYRCC	1 cut(s)	401
BspTNI	GGTCTC	2 cut(s)	83, 701
BsrDI	GCAATG	1 cut(s)	748
BsrFI	RCCGGY	1 cut(s)	92
BsrI	ACTGG	1 cut(s)	539
BssAI	RCCGGY	1 cut(s)	92
BssECI	CCNNGG	3 cut(s)	405, 711, 826
BssMI	GATC	6 cut(s)	42, 121, 159, 574, 609, 783
BssNI	GRCGYC	1 cut(s)	307
BssSI	CACGAG	1 cut(s)	218
Bst2BI	CACGAG	1 cut(s)	218
Bst2UI	CCWGG	1 cut(s)	328
Bst4CI	ACNGT	2 cut(s)	516, 827
BstACI	GRCGYC	1 cut(s)	307
BstC8I	GCNNGC	2 cut(s)	731, 876
BstDEI	CTNAG	5 cut(s)	78, 87, 311, 369, 380
BstDSI	CCRYGG	2 cut(s)	405, 826
BstF5I	GGATG	3 cut(s)	196, 432, 688
BstH2I	RGCGCY	1 cut(s)	362
BstHHI	GCGC	1 cut(s)	361
BstKTI	GATC	6 cut(s)	45, 124, 162, 577, 612, 786
BstMAI	GTCTC	3 cut(s)	83, 701, 868
BstMBI	GATC	6 cut(s)	42, 121, 159, 574, 609, 783
BstMCI	CGRYCG	2 cut(s)	45, 124
BstMWI	GCNNNNNNNGC	2 cut(s)	193, 1064
BstNI	CCWGG	1 cut(s)	328
BstPAI	GACNNNNGTC	1 cut(s)	753
BstSCI	CCNGG	1 cut(s)	326
BstV1I	GCAGC	1 cut(s)	1042
BstV2I	GAAGAC	1 cut(s)	691
BstX2I	RGATCY	1 cut(s)	574
BstYI	RGATCY	1 cut(s)	574
Bsu15I	ATCGAT	1 cut(s)	120
BsuRI	GGCC	2 cut(s)	107, 801
BsuTUI	ATCGAT	1 cut(s)	120
BtgI	CCRYGG	2 cut(s)	405, 826
BtsCI	GGATG	3 cut(s)	196, 432, 688
BtsIMutI	CAGTG	2 cut(s)	84, 546
Cac8I	GCNNGC	2 cut(s)	731, 876
CfoI	GCGC	1 cut(s)	361
Cfr10I	RCCGGY	1 cut(s)	92
Cfr13I	GGNCC	2 cut(s)	237, 420
ClaI	ATCGAT	1 cut(s)	120
Csp6I	GTAC	1 cut(s)	887
CspAI	ACCGGT	1 cut(s)	92
CviAII	CATG	5 cut(s)	109, 448, 522, 751, 1036
CviQI	GTAC	1 cut(s)	887
DdeI	CTNAG	5 cut(s)	78, 87, 311, 369, 380
DpnI	GATC	6 cut(s)	44, 123, 161, 576, 611, 785
DpnII	GATC	6 cut(s)	42, 121, 159, 574, 609, 783
EaeI	YGGCCR	1 cut(s)	105
Eco147I	AGGCCT	1 cut(s)	801
Eco31I	GGTCTC	2 cut(s)	83, 701
Eco32I	GATATC	3 cut(s)	174, 458, 1117
Eco47I	GGWCC	2 cut(s)	237, 420
Eco57I	CTGAAG	1 cut(s)	342
EcoRI	GAATTC	1 cut(s)	1073
EcoRII	CCWGG	1 cut(s)	326
EcoRV	GATATC	3 cut(s)	174, 458, 1117
EcoT22I	ATGCAT	1 cut(s)	775
FaeI	CATG	5 cut(s)	112, 451, 525, 754, 1039
FatI	CATG	5 cut(s)	108, 447, 521, 750, 1035
FbaI	TGATCA	1 cut(s)	783
FblI	GTMKAC	2 cut(s)	153, 1041
Fnu4HI	GCNGC	1 cut(s)	1056
FokI	GGATG	3 cut(s)	183, 419, 695
Fsp4HI	GCNGC	1 cut(s)	1056
FspBI	CTAG	3 cut(s)	227, 1068, 1143
GlaI	GCGC	1 cut(s)	360
GluI	GCNGC	1 cut(s)	1056
GsuI	CTGGAG	1 cut(s)	1080
HaeII	RGCGCY	1 cut(s)	362
HaeIII	GGCC	2 cut(s)	107, 801
HapII	CCGG	1 cut(s)	93
HhaI	GCGC	1 cut(s)	361
Hin1I	GRCGYC	1 cut(s)	307
Hin1II	CATG	5 cut(s)	112, 451, 525, 754, 1039
Hin6I	GCGC	1 cut(s)	359
HinP1I	GCGC	1 cut(s)	359
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	5 cut(s)	232, 333, 559, 754, 1139
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	3 cut(s)	79, 107, 287
Hpy166II	GTNNAC	2 cut(s)	154, 1042
Hpy188I	TCNGA	8 cut(s)	81, 126, 237, 370, 614, 633, 852, 1050
Hpy188III	TCNNGA	7 cut(s)	10, 163, 572, 680, 928, 1004, 1109
Hpy8I	GTNNAC	2 cut(s)	154, 1042
HpyAV	CCTTC	3 cut(s)	44, 58, 372
HpyCH4III	ACNGT	2 cut(s)	516, 827
HpyCH4IV	ACGT	1 cut(s)	307
HpyCH4V	TGCA	3 cut(s)	217, 587, 773
HpyF10VI	GCNNNNNNNGC	2 cut(s)	193, 1064
HpyF3I	CTNAG	5 cut(s)	78, 87, 311, 369, 380
HpySE526I	ACGT	1 cut(s)	307
Hsp92I	GRCGYC	1 cut(s)	307
Hsp92II	CATG	5 cut(s)	112, 451, 525, 754, 1039
HspAI	GCGC	1 cut(s)	359
Ksp22I	TGATCA	1 cut(s)	783
Kzo9I	GATC	6 cut(s)	42, 121, 159, 574, 609, 783
LmnI	GCTCC	4 cut(s)	356, 545, 652, 1027
Lsp1109I	GCAGC	1 cut(s)	1042
LweI	GCATC	3 cut(s)	205, 942, 1054
MaeI	CTAG	3 cut(s)	227, 1068, 1143
MaeII	ACGT	1 cut(s)	307
MaeIII	GTNAC	2 cut(s)	383, 941
MalI	GATC	6 cut(s)	44, 123, 161, 576, 611, 785
MboI	GATC	6 cut(s)	42, 121, 159, 574, 609, 783
MboII	GAAGA	6 cut(s)	124, 328, 357, 452, 680, 691
MflI	RGATCY	1 cut(s)	574
MhlI	GDGCHC	1 cut(s)	735
MlsI	TGGCCA	1 cut(s)	107
MluCI	AATT	4 cut(s)	30, 278, 637, 1073
MluNI	TGGCCA	1 cut(s)	107
MlyI	GAGTC	2 cut(s)	241, 763
MmeI	TCCRAC	3 cut(s)	215, 364, 1049
Mox20I	TGGCCA	1 cut(s)	107
Mph1103I	ATGCAT	1 cut(s)	775
MscI	TGGCCA	1 cut(s)	107
MseI	TTAA	1 cut(s)	768
MslI	CAYNNNNRTG	1 cut(s)	201
Msp20I	TGGCCA	1 cut(s)	107
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	1 cut(s)	328
Mva1269I	GAATGC	1 cut(s)	567
MvaI	CCWGG	1 cut(s)	328
MwoI	GCNNNNNNNGC	2 cut(s)	193, 1064
NdeII	GATC	6 cut(s)	42, 121, 159, 574, 609, 783
NlaIII	CATG	5 cut(s)	112, 451, 525, 754, 1039
NlaIV	GGNNCC	3 cut(s)	55, 403, 576
NmuCI	GTSAC	1 cut(s)	383
NsiI	ATGCAT	1 cut(s)	775
PceI	AGGCCT	1 cut(s)	801
PcsI	WCGNNNNNNNCGW	1 cut(s)	708
PctI	GAATGC	1 cut(s)	567
PfeI	GAWTC	3 cut(s)	333, 559, 1139
PflMI	CCANNNNNTGG	1 cut(s)	919
PinAI	ACCGGT	1 cut(s)	92
PkrI	GCNGC	1 cut(s)	1057
Ple19I	CGATCG	2 cut(s)	45, 124
PleI	GAGTC	2 cut(s)	240, 762
PpsI	GAGTC	2 cut(s)	240, 762
PshAI	GACNNNNGTC	1 cut(s)	753
Psp6I	CCWGG	1 cut(s)	326
PspGI	CCWGG	1 cut(s)	326
PspN4I	GGNNCC	3 cut(s)	55, 403, 576
PspPI	GGNCC	2 cut(s)	237, 420
PsuI	RGATCY	1 cut(s)	574
PvuI	CGATCG	2 cut(s)	45, 124
RsaI	GTAC	1 cut(s)	888
RsaNI	GTAC	1 cut(s)	887
RseI	CAYNNNNRTG	1 cut(s)	201
SalI	GTCGAC	1 cut(s)	152
SaqAI	TTAA	1 cut(s)	768
SatI	GCNGC	1 cut(s)	1056
Sau3AI	GATC	6 cut(s)	42, 121, 159, 574, 609, 783
Sau96I	GGNCC	2 cut(s)	237, 420
SchI	GAGTC	2 cut(s)	241, 763
ScrFI	CCNGG	1 cut(s)	328
SduI	GDGCHC	1 cut(s)	735
SfaNI	GCATC	3 cut(s)	205, 942, 1054
SinI	GGWCC	2 cut(s)	237, 420
SmiMI	CAYNNNNRTG	1 cut(s)	201
SmlI	CTYRAG	3 cut(s)	795, 1079, 1109
SmoI	CTYRAG	3 cut(s)	795, 1079, 1109
Sse9I	AATT	4 cut(s)	30, 278, 637, 1073
SseBI	AGGCCT	1 cut(s)	801
SsiI	CCGC	1 cut(s)	1130
SspI	AATATT	2 cut(s)	255, 657
SspMI	CTAG	3 cut(s)	227, 1068, 1143
StuI	AGGCCT	1 cut(s)	801
StyD4I	CCNGG	1 cut(s)	326
TaaI	ACNGT	2 cut(s)	516, 827
TaiI	ACGT	1 cut(s)	310
TaqI	TCGA	5 cut(s)	120, 153, 702, 1005, 1151
TaqII	GACCGA	1 cut(s)	725
TasI	AATT	4 cut(s)	30, 278, 637, 1073
TfiI	GAWTC	3 cut(s)	333, 559, 1139
Tru1I	TTAA	1 cut(s)	768
Tru9I	TTAA	1 cut(s)	768
TscAI	CASTG	2 cut(s)	91, 546
TseFI	GTSAC	1 cut(s)	383
TseI	GCWGC	1 cut(s)	1055
Tsp45I	GTSAC	1 cut(s)	383
TspDTI	ATGAA	8 cut(s)	42, 125, 197, 253, 287, 551, 681, 857
TspGWI	ACGGA	1 cut(s)	318
TspRI	CASTG	2 cut(s)	91, 546
Van91I	CCANNNNNTGG	1 cut(s)	919
VpaK11BI	GGWCC	2 cut(s)	237, 420
XapI	RAATTY	1 cut(s)	1073
XmiI	GTMKAC	2 cut(s)	153, 1041
XspI	CTAG	3 cut(s)	227, 1068, 1143
ZraI	GACGTC	1 cut(s)	308
Zsp2I	ATGCAT	1 cut(s)	775

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.