Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001736.1

Orthogroup ID

OG0009897

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2673

Gene Structure 2673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001736.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

atggtggtcaggaaagtgggtaagtatgaaattgggaggacgatcggcgaaggaacctttgcgaaggtgaagtttgctcagaacactgagacaggtgagagtgtggccatgaagataatcgatcggagttccatcatcaagcacaagatggtcgaccagatcaagagggagatatccataatgaagcttgtgaggcatccctatgtagttcgtttgcacgaggttctagcgagtcggaccaagatttatataatattggagttcattacgggtggtgaattgtttgataaaatcgttcatcacggacgtcttagcgaagctgaagccaggagattcttccaacagcttattgatggagtggattattgccacagcaagggagtgtatcatagagatttaaagccggaaaatcttttgcttgattctcttggaaatttaagaatttcagatttcggtctgagtgcattgcctgaacaaggagtcagcctccttcgcacaacttgtgggacccctaactatgttgcacctgaggtcctcagtcacaagggttatgatggtgccgtggcagatgtttggtcctgtggggtcatcctttatgttctcatggctggatatcttccatttgatgagcttgacctgaccacactatatagtaagattgagaaagcacagttctcatgcccaacttggtttccagtgggagcaaaatccttgattcatagcattctggatccaaatcctgcaact

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0010033 GO:0010035 GO:0010167 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022622 GO:0023052 GO:0032501 GO:0032502 GO:0034284 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

249

Amino Acids

27.91

Weight (kDa)

8.26

Isoelectric Point (pI)

34.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26980 AT4G24400 AT4G24400
fragaria_vesca	FvH4_5g33970 FvH4_5g33970 FvH4_5g33970
malus_domestica	MD08G1206900.v1.1 MD15G1390800.v1.1
prunus_persica	Prupe.1G539600_v2.0.a1 Prupe.1G539600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0233351
rosa_laevigata	RLG00000001276
rosa_multiflora	Rmu_sc0001736.1_g000001 Rmu_sc0008806.1_g000004
rosa_roxburghii	Rroxscaffold_3G00227350
rosa_rugosa	Rorug07G0280200
rosa_samantha	Rh7AG436000 Rh7BG408900 Rh7CG455300 Rh7DG425100
rosa_wichuraiana	Rw7G035870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	310
AccB1I	GGYRCC	1 cut(s)	557
AccI	GTMKAC	1 cut(s)	153
AclWI	GGATC	2 cut(s)	725, 738
AcoI	YGGCCR	1 cut(s)	105
AcsI	RAATTY	2 cut(s)	433, 441
AcuI	CTGAAG	1 cut(s)	342
AcyI	GRCGYC	1 cut(s)	307
AfiI	CCNNNNNNNGG	2 cut(s)	376, 476
AjnI	CCWGG	1 cut(s)	326
AluBI	AGCT	4 cut(s)	187, 320, 346, 631
AluI	AGCT	4 cut(s)	187, 320, 346, 631
Alw26I	GTCTC	1 cut(s)	83
AlwI	GGATC	2 cut(s)	725, 738
AoxI	GGCC	1 cut(s)	105
ApoI	RAATTY	2 cut(s)	433, 441
AspS9I	GGNCC	4 cut(s)	237, 507, 532, 576
AsuHPI	GGTGA	3 cut(s)	79, 107, 287
AvaII	GGWCC	4 cut(s)	237, 507, 532, 576
AxyI	CCTNAGG	1 cut(s)	528
BalI	TGGCCA	1 cut(s)	107
BamHI	GGATCC	1 cut(s)	730
BanI	GGYRCC	1 cut(s)	557
BauI	CACGAG	1 cut(s)	218
BccI	CCATC	4 cut(s)	140, 142, 347, 548
BceAI	ACGGC	1 cut(s)	545
BciT130I	CCWGG	1 cut(s)	328
BcoDI	GTCTC	1 cut(s)	83
BfaI	CTAG	1 cut(s)	227
Bme1390I	CCNGG	1 cut(s)	328
Bme18I	GGWCC	4 cut(s)	237, 507, 532, 576
BmgT120I	GGNCC	4 cut(s)	237, 507, 532, 576
BmiI	GGNNCC	5 cut(s)	55, 508, 509, 559, 732
BmrFI	CCNGG	1 cut(s)	328
BmsI	GCATC	1 cut(s)	205
BplI	GAGNNNNNCTC	2 cut(s)	471, 503
Bsa29I	ATCGAT	1 cut(s)	120
BsaBI	GATNNNNATC	1 cut(s)	735
BsaHI	GRCGYC	1 cut(s)	307
BsaJI	CCNNGG	1 cut(s)	561
Bsc4I	CCNNNNNNNGG	2 cut(s)	376, 476
Bse1I	ACTGG	1 cut(s)	695
Bse21I	CCTNAGG	1 cut(s)	528
Bse3DI	GCAATG	1 cut(s)	464
Bse8I	GATNNNNATC	1 cut(s)	735
BseBI	CCWGG	1 cut(s)	328
BseCI	ATCGAT	1 cut(s)	120
BseDI	CCNNGG	1 cut(s)	561
BseGI	GGATG	2 cut(s)	196, 588
BseJI	GATNNNNATC	1 cut(s)	735
BseLI	CCNNNNNNNGG	2 cut(s)	376, 476
BseMI	GCAATG	1 cut(s)	464
BseMII	CTCAG	5 cut(s)	78, 92, 449, 519, 550
BseNI	ACTGG	1 cut(s)	695
Bsh1285I	CGRYCG	2 cut(s)	45, 124
BshFI	GGCC	1 cut(s)	107
BshNI	GGYRCC	1 cut(s)	557
BshVI	ATCGAT	1 cut(s)	120
BsiEI	CGRYCG	2 cut(s)	45, 124
BsiSI	CCGG	1 cut(s)	404
BslFI	GGGAC	1 cut(s)	520
BslI	CCNNNNNNNGG	2 cut(s)	376, 476
BsmAI	GTCTC	1 cut(s)	83
BsmFI	GGGAC	1 cut(s)	520
BsmI	GAATGC	1 cut(s)	723
BsnI	GGCC	1 cut(s)	107
Bsp143I	GATC	4 cut(s)	42, 121, 159, 730
BspANI	GGCC	1 cut(s)	107
BspCNI	CTCAG	5 cut(s)	79, 91, 450, 520, 549
BspDI	ATCGAT	1 cut(s)	120
BspLI	GGNNCC	5 cut(s)	55, 508, 509, 559, 732
BspPI	GGATC	2 cut(s)	725, 738
BspT107I	GGYRCC	1 cut(s)	557
BsrDI	GCAATG	1 cut(s)	464
BsrI	ACTGG	1 cut(s)	695
BssECI	CCNNGG	1 cut(s)	561
BssMI	GATC	4 cut(s)	42, 121, 159, 730
BssNI	GRCGYC	1 cut(s)	307
BssSI	CACGAG	1 cut(s)	218
Bst2BI	CACGAG	1 cut(s)	218
Bst2UI	CCWGG	1 cut(s)	328
Bst4CI	ACNGT	1 cut(s)	672
BstACI	GRCGYC	1 cut(s)	307
BstDEI	CTNAG	6 cut(s)	78, 87, 311, 458, 528, 536
BstDSI	CCRYGG	1 cut(s)	561
BstENI	CCTNNNNNAGG	1 cut(s)	474
BstF5I	GGATG	2 cut(s)	196, 588
BstKTI	GATC	4 cut(s)	45, 124, 162, 733
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	4 cut(s)	42, 121, 159, 730
BstMCI	CGRYCG	2 cut(s)	45, 124
BstMWI	GCNNNNNNNGC	2 cut(s)	193, 492
BstNI	CCWGG	1 cut(s)	328
BstSCI	CCNGG	1 cut(s)	326
BstX2I	RGATCY	1 cut(s)	730
BstYI	RGATCY	1 cut(s)	730
Bsu15I	ATCGAT	1 cut(s)	120
Bsu36I	CCTNAGG	1 cut(s)	528
BsuRI	GGCC	1 cut(s)	107
BsuTUI	ATCGAT	1 cut(s)	120
BtgI	CCRYGG	1 cut(s)	561
BtsCI	GGATG	2 cut(s)	196, 588
BtsIMutI	CAGTG	2 cut(s)	84, 702
Cfr13I	GGNCC	4 cut(s)	237, 507, 532, 576
ClaI	ATCGAT	1 cut(s)	120
CviAII	CATG	3 cut(s)	109, 604, 678
CviJI	RGCY	9 cut(s)	107, 187, 320, 326, 346, 403, 486, 608, 631
CviKI_1	RGCY	9 cut(s)	107, 187, 320, 326, 346, 403, 486, 608, 631
DdeI	CTNAG	6 cut(s)	78, 87, 311, 458, 528, 536
DpnI	GATC	4 cut(s)	44, 123, 161, 732
DpnII	GATC	4 cut(s)	42, 121, 159, 730
DraI	TTTAAA	1 cut(s)	399
EaeI	YGGCCR	1 cut(s)	105
Eco32I	GATATC	2 cut(s)	174, 614
Eco47I	GGWCC	4 cut(s)	237, 507, 532, 576
Eco57I	CTGAAG	1 cut(s)	342
Eco81I	CCTNAGG	1 cut(s)	528
EcoNI	CCTNNNNNAGG	1 cut(s)	474
EcoO109I	RGGNCCY	2 cut(s)	507, 532
EcoRII	CCWGG	1 cut(s)	326
EcoRV	GATATC	2 cut(s)	174, 614
FaeI	CATG	3 cut(s)	112, 607, 681
FaqI	GGGAC	1 cut(s)	520
FatI	CATG	3 cut(s)	108, 603, 677
FblI	GTMKAC	1 cut(s)	153
FokI	GGATG	2 cut(s)	183, 575
FspBI	CTAG	1 cut(s)	227
HaeIII	GGCC	1 cut(s)	107
HapII	CCGG	1 cut(s)	404
Hin1I	GRCGYC	1 cut(s)	307
Hin1II	CATG	3 cut(s)	112, 607, 681
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	5 cut(s)	232, 333, 422, 480, 715
HpaII	CCGG	1 cut(s)	404
HphI	GGTGA	3 cut(s)	79, 107, 287
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	5 cut(s)	81, 126, 237, 448, 459
Hpy188III	TCNNGA	3 cut(s)	10, 163, 728
Hpy8I	GTNNAC	1 cut(s)	154
HpyAV	CCTTC	3 cut(s)	44, 58, 500
HpyCH4III	ACNGT	1 cut(s)	672
HpyCH4IV	ACGT	1 cut(s)	307
HpyCH4V	TGCA	4 cut(s)	217, 464, 524, 743
HpyF10VI	GCNNNNNNNGC	2 cut(s)	193, 492
HpyF3I	CTNAG	6 cut(s)	78, 87, 311, 458, 528, 536
HpySE526I	ACGT	1 cut(s)	307
Hsp92I	GRCGYC	1 cut(s)	307
Hsp92II	CATG	3 cut(s)	112, 607, 681
KflI	GGGWCCC	1 cut(s)	507
Kzo9I	GATC	4 cut(s)	42, 121, 159, 730
LmnI	GCTCC	1 cut(s)	701
LweI	GCATC	1 cut(s)	205
MaeI	CTAG	1 cut(s)	227
MaeII	ACGT	1 cut(s)	307
MaeIII	GTNAC	1 cut(s)	539
MalI	GATC	4 cut(s)	44, 123, 161, 732
MboI	GATC	4 cut(s)	42, 121, 159, 730
MboII	GAAGA	3 cut(s)	124, 328, 608
MflI	RGATCY	1 cut(s)	730
MlsI	TGGCCA	1 cut(s)	107
MluCI	AATT	4 cut(s)	30, 278, 433, 441
MluNI	TGGCCA	1 cut(s)	107
MlyI	GAGTC	2 cut(s)	241, 489
MmeI	TCCRAC	2 cut(s)	215, 364
MnlI	CCTC	7 cut(s)	30, 159, 186, 214, 497, 523, 545
Mox20I	TGGCCA	1 cut(s)	107
MscI	TGGCCA	1 cut(s)	107
MseI	TTAA	2 cut(s)	398, 437
MslI	CAYNNNNRTG	1 cut(s)	201
Msp20I	TGGCCA	1 cut(s)	107
MspI	CCGG	1 cut(s)	404
MspR9I	CCNGG	1 cut(s)	328
Mva1269I	GAATGC	1 cut(s)	723
MvaI	CCWGG	1 cut(s)	328
MwoI	GCNNNNNNNGC	2 cut(s)	193, 492
NdeII	GATC	4 cut(s)	42, 121, 159, 730
NlaIII	CATG	3 cut(s)	112, 607, 681
NlaIV	GGNNCC	5 cut(s)	55, 508, 509, 559, 732
NmuCI	GTSAC	1 cut(s)	539
PctI	GAATGC	1 cut(s)	723
PfeI	GAWTC	3 cut(s)	333, 422, 715
Ple19I	CGATCG	2 cut(s)	45, 124
PleI	GAGTC	2 cut(s)	240, 488
PpsI	GAGTC	2 cut(s)	240, 488
PpuMI	RGGWCCY	2 cut(s)	507, 532
Psp5II	RGGWCCY	2 cut(s)	507, 532
Psp6I	CCWGG	1 cut(s)	326
PspGI	CCWGG	1 cut(s)	326
PspN4I	GGNNCC	5 cut(s)	55, 508, 509, 559, 732
PspPI	GGNCC	4 cut(s)	237, 507, 532, 576
PspPPI	RGGWCCY	2 cut(s)	507, 532
PsuI	RGATCY	1 cut(s)	730
PvuI	CGATCG	2 cut(s)	45, 124
RseI	CAYNNNNRTG	1 cut(s)	201
SalI	GTCGAC	1 cut(s)	152
SaqAI	TTAA	2 cut(s)	398, 437
Sau3AI	GATC	4 cut(s)	42, 121, 159, 730
Sau96I	GGNCC	4 cut(s)	237, 507, 532, 576
SchI	GAGTC	2 cut(s)	241, 489
ScrFI	CCNGG	1 cut(s)	328
SfaNI	GCATC	1 cut(s)	205
SinI	GGWCC	4 cut(s)	237, 507, 532, 576
SmiMI	CAYNNNNRTG	1 cut(s)	201
Sse9I	AATT	4 cut(s)	30, 278, 433, 441
SspI	AATATT	1 cut(s)	255
SspMI	CTAG	1 cut(s)	227
StyD4I	CCNGG	1 cut(s)	326
TaaI	ACNGT	1 cut(s)	672
TaiI	ACGT	1 cut(s)	310
TaqI	TCGA	2 cut(s)	120, 153
TaqII	GACCGA	1 cut(s)	443
TasI	AATT	4 cut(s)	30, 278, 433, 441
TfiI	GAWTC	3 cut(s)	333, 422, 715
Tru1I	TTAA	2 cut(s)	398, 437
Tru9I	TTAA	2 cut(s)	398, 437
TscAI	CASTG	2 cut(s)	91, 702
TseFI	GTSAC	1 cut(s)	539
Tsp45I	GTSAC	1 cut(s)	539
TspDTI	ATGAA	6 cut(s)	42, 125, 197, 253, 287, 707
TspGWI	ACGGA	1 cut(s)	318
TspRI	CASTG	2 cut(s)	91, 702
VpaK11BI	GGWCC	4 cut(s)	237, 507, 532, 576
XagI	CCTNNNNNAGG	1 cut(s)	474
XapI	RAATTY	2 cut(s)	433, 441
XmiI	GTMKAC	1 cut(s)	153
XspI	CTAG	1 cut(s)	227
ZraI	GACGTC	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.