Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0009897

Physical Location & Seq

Genomic Coordinates Reverse (-)

48511598 .. 48516801

Gene Structure 5204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1390800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGGTGGTGAGGAAAGTGGGAAAGTATGAGGTTGGGAGGACGATCGGCGAAGGGACCTTCGCCAAGGTGAAGTTTGCCCAGAACACTGAGACGGGTGAGAGTGTCGCCATGAAAGTGCTGGATCGCACTACCATCATTAAGCACAAGATGGTCGACCAGATCAAGAGGGAAATATCGATAATGAAGCTTGTCAGGCACCCCTACGTTGTTCGTCTGCATGAGGTTCTAGCAAGCCGTACTAAGATTTATATAATCTTGGAGTTCATTACTGGTGGAGAATTGTTTGATAAAATCGTTCATCATGGGCGACTTAGTGAAGGCGAATCGAGGAGATACTTCCAACAGCTTATTGATGGGGTGGATTATTGCCACAGCAAGGGAGTTTATCATAGAGACTTAAAGCCGGAGAACCTGTTGCTTGATTCTCTAGGAAATTTAAAAATTTCCGATTTTGGTCTTAGTGCTTTGCCCGAACAAGGAGTCAGCCTCCTTCGGACAACCTGTGGCACCCCTAACTATGTAGCACCTGAGGTACTCAGTCACAAGGGTTATGATGGTGCCGTGGCAGATGTTTGGTCCTGCGGGGTTATCCTTTATGTCCTGTTGGCAGGTTATCTTCCGTTTGATGAGCTTGACCTAACCACACTATATAATCTCATTGAGAAAGCAGACTTCACATGCCCATCTTGGTTTCCAGTGGGAGCAAAATCCTTGATTCACAGAATTTTAGAGACAAACCCAGAAAAGCGTATTGCAATTGAACAGATAAGAAATGATGAGTGGTTTCAGAAGAATTACATTCCTGCCCGACTACTTGAATATGAAGATGTAAATCTGGATGATGTAAATGCTGTTTTTGACGAAGCCGACTCTGAGCAGGAACAAAGGGTTATCGAGCACCATGGAAATGAAGACATGGGTCCTTTAGTTCTTAATGCATTTGACTTGATAATTCTATCTCAAGGCTTAAACCTCGCAACAATGTTTGACCGTGGAAAGGATTCTATGAAATATCAGACACGCTTTGTTTCACAAAAGCCAGCAAAGGTTGTATTATCCAGTATGGAAGTTGTTGCCCAATCAATGGGTTTCAAGACACACATTCGCAACTATAAGATGAGAGTGGAGGGTCTTTCAGCAAATAAAACTTCTCATTTCTCCATTATCCTTGAAATTTTTGAAGTTGCTCCGACCTATTACATGGTAGACATTCAGAAAGCCGCTGGAGATGCTAGTGAATTCCTCAAGTTCTACAAGAACTTCTGTAGCAATCTTGAGGATATCATCTGGAAACCTCCTACTGAAACTAGCAAATCGAGGATCGGCAAAAGCAAAAGTAAAAAGCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0010033 GO:0010035 GO:0010167 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022622 GO:0023052 GO:0032501 GO:0032502 GO:0034284 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

450

Amino Acids

51.1

Weight (kDa)

6.91

Isoelectric Point (pI)

36.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	9 - 262	2.1e-73	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	11 - 258	3.6e-38	Protein tyrosine and serine/threonine kinase
NAF	PF03822	308 - 366	3.7e-17	NAF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26980 AT4G24400 AT4G24400
fragaria_vesca	FvH4_5g33970 FvH4_5g33970 FvH4_5g33970
malus_domestica	MD08G1206900.v1.1 MD15G1390800.v1.1
prunus_persica	Prupe.1G539600_v2.0.a1 Prupe.1G539600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0233351
rosa_laevigata	RLG00000001276
rosa_multiflora	Rmu_sc0001736.1_g000001 Rmu_sc0008806.1_g000004
rosa_roxburghii	Rroxscaffold_3G00227350
rosa_rugosa	Rorug07G0280200
rosa_samantha	Rh7AG436000 Rh7BG408900 Rh7CG455300 Rh7DG425100
rosa_wichuraiana	Rw7G035870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	599
AccB1I	GGYRCC	3 cut(s)	195, 506, 557
AccB7I	CCANNNNNTGG	1 cut(s)	1084
AccI	GTMKAC	2 cut(s)	153, 1206
AciI	CCGC	2 cut(s)	582, 1221
AclWI	GGATC	2 cut(s)	129, 1328
AcsI	RAATTY	5 cut(s)	433, 441, 723, 1173, 1238
AfaI	GTAC	2 cut(s)	238, 534
AfeI	AGCGCT	1 cut(s)	1346
AfiI	CCNNNNNNNGG	4 cut(s)	376, 476, 997, 1084
AgsI	TTSAA	5 cut(s)	761, 818, 1093, 1172, 1181
AluBI	AGCT	3 cut(s)	187, 346, 631
AluI	AGCT	3 cut(s)	187, 346, 631
Alw21I	GWGCWC	1 cut(s)	900
Alw26I	GTCTC	3 cut(s)	83, 387, 725
AlwI	GGATC	2 cut(s)	129, 1328
Aor51HI	AGCGCT	1 cut(s)	1346
ApoI	RAATTY	5 cut(s)	433, 441, 723, 1173, 1238
ArsI	GACNNNNNNTTYG	2 cut(s)	465, 497
Asp700I	GAANNNNTTC	1 cut(s)	1000
AspLEI	GCGC	1 cut(s)	1347
AspS9I	GGNCC	3 cut(s)	54, 576, 920
AsuHPI	GGTGA	3 cut(s)	19, 79, 107
AvaII	GGWCC	3 cut(s)	54, 576, 920
AxyI	CCTNAGG	1 cut(s)	528
BanI	GGYRCC	3 cut(s)	195, 506, 557
BbsI	GAAGAC	1 cut(s)	918
Bbv12I	GWGCWC	1 cut(s)	900
BccI	CCATC	5 cut(s)	140, 142, 347, 548, 691
BceAI	ACGGC	2 cut(s)	219, 545
BcoDI	GTCTC	3 cut(s)	83, 387, 725
BfaI	CTAG	4 cut(s)	227, 428, 1233, 1308
BfmI	CTRYAG	1 cut(s)	1264
BfoI	RGCGCY	1 cut(s)	1348
BfuAI	ACCTGC	1 cut(s)	599
BisI	GCNGC	1 cut(s)	1221
BlsI	GCNGC	1 cut(s)	1222
Bme18I	GGWCC	3 cut(s)	54, 576, 920
BmgT120I	GGNCC	3 cut(s)	54, 576, 920
BmiI	GGNNCC	5 cut(s)	55, 197, 508, 559, 921
BmsI	GCATC	1 cut(s)	1219
BoxI	GACNNNNGTC	1 cut(s)	918
BpiI	GAAGAC	1 cut(s)	918
BplI	GAGNNNNNCTC	2 cut(s)	471, 503
BpmI	CTGGAG	1 cut(s)	1245
BpuEI	CTTGAG	3 cut(s)	945, 1229, 1295
Bsa29I	ATCGAT	1 cut(s)	176
BsaBI	GATNNNNATC	1 cut(s)	831
BsaJI	CCNNGG	4 cut(s)	63, 561, 901, 991
BsaXI	ACNNNNNCTCC	2 cut(s)	398, 428
Bsc4I	CCNNNNNNNGG	4 cut(s)	376, 476, 997, 1084
Bse1I	ACTGG	3 cut(s)	274, 695, 1059
Bse21I	CCTNAGG	1 cut(s)	528
Bse8I	GATNNNNATC	1 cut(s)	831
BseCI	ATCGAT	1 cut(s)	176
BseDI	CCNNGG	4 cut(s)	63, 561, 901, 991
BseGI	GGATG	1 cut(s)	844
BseJI	GATNNNNATC	1 cut(s)	831
BseLI	CCNNNNNNNGG	4 cut(s)	376, 476, 997, 1084
BseMII	CTCAG	4 cut(s)	78, 519, 550, 864
BseNI	ACTGG	3 cut(s)	274, 695, 1059
BseRI	GAGGAG	1 cut(s)	343
Bsh1285I	CGRYCG	1 cut(s)	45
BshNI	GGYRCC	3 cut(s)	195, 506, 557
BshVI	ATCGAT	1 cut(s)	176
BsiEI	CGRYCG	1 cut(s)	45
BsiHKAI	GWGCWC	1 cut(s)	900
BsiSI	CCGG	1 cut(s)	404
BslFI	GGGAC	1 cut(s)	67
BslI	CCNNNNNNNGG	4 cut(s)	376, 476, 997, 1084
BsmAI	GTCTC	3 cut(s)	83, 387, 725
BsmBI	CGTCTC	1 cut(s)	83
BsmFI	GGGAC	1 cut(s)	67
Bsp1286I	GDGCHC	1 cut(s)	900
Bsp143I	GATC	4 cut(s)	42, 121, 159, 1320
Bsp19I	CCATGG	1 cut(s)	901
BspACI	CCGC	2 cut(s)	582, 1221
BspCNI	CTCAG	4 cut(s)	79, 520, 549, 865
BspDI	ATCGAT	1 cut(s)	176
BspLI	GGNNCC	5 cut(s)	55, 197, 508, 559, 921
BspMI	ACCTGC	1 cut(s)	599
BspPI	GGATC	2 cut(s)	129, 1328
BspT107I	GGYRCC	3 cut(s)	195, 506, 557
BsrI	ACTGG	3 cut(s)	274, 695, 1059
BssECI	CCNNGG	4 cut(s)	63, 561, 901, 991
BssMI	GATC	4 cut(s)	42, 121, 159, 1320
BssT1I	CCWWGG	2 cut(s)	63, 901
Bst4CI	ACNGT	1 cut(s)	992
BstC8I	GCNNGC	2 cut(s)	232, 1041
BstDEI	CTNAG	7 cut(s)	87, 240, 311, 458, 528, 536, 873
BstDSI	CCRYGG	3 cut(s)	561, 901, 991
BstF5I	GGATG	1 cut(s)	844
BstH2I	RGCGCY	1 cut(s)	1348
BstHHI	GCGC	1 cut(s)	1347
BstKTI	GATC	4 cut(s)	45, 124, 162, 1323
BstMAI	GTCTC	3 cut(s)	83, 387, 725
BstMBI	GATC	4 cut(s)	42, 121, 159, 1320
BstMCI	CGRYCG	1 cut(s)	45
BstMWI	GCNNNNNNNGC	2 cut(s)	193, 1229
BstNSI	RCATGY	1 cut(s)	681
BstPAI	GACNNNNGTC	1 cut(s)	918
BstSFI	CTRYAG	1 cut(s)	1264
BstV2I	GAAGAC	1 cut(s)	918
Bsu15I	ATCGAT	1 cut(s)	176
Bsu36I	CCTNAGG	1 cut(s)	528
BsuTUI	ATCGAT	1 cut(s)	176
BtgI	CCRYGG	3 cut(s)	561, 901, 991
BtsCI	GGATG	1 cut(s)	844
BtsIMutI	CAGTG	2 cut(s)	84, 702
BveI	ACCTGC	1 cut(s)	599
Cac8I	GCNNGC	2 cut(s)	232, 1041
CfoI	GCGC	1 cut(s)	1347
Cfr13I	GGNCC	3 cut(s)	54, 576, 920
ClaI	ATCGAT	1 cut(s)	176
Csp6I	GTAC	2 cut(s)	237, 533
CviAII	CATG	7 cut(s)	109, 218, 302, 678, 902, 916, 1201
CviQI	GTAC	2 cut(s)	237, 533
DdeI	CTNAG	7 cut(s)	87, 240, 311, 458, 528, 536, 873
DpnI	GATC	4 cut(s)	44, 123, 161, 1322
DpnII	GATC	4 cut(s)	42, 121, 159, 1320
DraI	TTTAAA	1 cut(s)	438
Eco130I	CCWWGG	2 cut(s)	63, 901
Eco32I	GATATC	1 cut(s)	1282
Eco47I	GGWCC	3 cut(s)	54, 576, 920
Eco47III	AGCGCT	1 cut(s)	1346
Eco81I	CCTNAGG	1 cut(s)	528
EcoO109I	RGGNCCY	2 cut(s)	54, 920
EcoRI	GAATTC	1 cut(s)	1238
EcoRV	GATATC	1 cut(s)	1282
EcoT14I	CCWWGG	2 cut(s)	63, 901
EcoT22I	ATGCAT	1 cut(s)	940
ErhI	CCWWGG	2 cut(s)	63, 901
Esp3I	CGTCTC	1 cut(s)	83
FaeI	CATG	7 cut(s)	112, 221, 305, 681, 905, 919, 1204
FaqI	GGGAC	1 cut(s)	67
FatI	CATG	7 cut(s)	108, 217, 301, 677, 901, 915, 1200
FauI	CCCGC	1 cut(s)	575
FblI	GTMKAC	2 cut(s)	153, 1206
Fnu4HI	GCNGC	1 cut(s)	1221
FokI	GGATG	1 cut(s)	851
Fsp4HI	GCNGC	1 cut(s)	1221
FspBI	CTAG	4 cut(s)	227, 428, 1233, 1308
GlaI	GCGC	1 cut(s)	1346
GluI	GCNGC	1 cut(s)	1221
GsuI	CTGGAG	1 cut(s)	1245
HaeII	RGCGCY	1 cut(s)	1348
HapII	CCGG	1 cut(s)	404
HhaI	GCGC	1 cut(s)	1347
Hin1II	CATG	7 cut(s)	112, 221, 305, 681, 905, 919, 1204
Hin6I	GCGC	1 cut(s)	1345
HinP1I	GCGC	1 cut(s)	1345
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	6 cut(s)	323, 422, 480, 715, 869, 1001
HpaII	CCGG	1 cut(s)	404
HphI	GGTGA	3 cut(s)	19, 79, 107
Hpy166II	GTNNAC	2 cut(s)	154, 1207
Hpy188I	TCNGA	7 cut(s)	448, 495, 789, 874, 1017, 1191, 1215
Hpy188III	TCNNGA	5 cut(s)	163, 836, 1093, 1274, 1288
Hpy8I	GTNNAC	2 cut(s)	154, 1207
HpyAV	CCTTC	4 cut(s)	44, 67, 311, 500
HpyCH4III	ACNGT	1 cut(s)	992
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	3 cut(s)	217, 755, 938
HpyF10VI	GCNNNNNNNGC	2 cut(s)	193, 1229
HpyF3I	CTNAG	7 cut(s)	87, 240, 311, 458, 528, 536, 873
HpySE526I	ACGT	1 cut(s)	204
Hsp92II	CATG	7 cut(s)	112, 221, 305, 681, 905, 919, 1204
HspAI	GCGC	1 cut(s)	1345
Kzo9I	GATC	4 cut(s)	42, 121, 159, 1320
LmnI	GCTCC	2 cut(s)	701, 1192
LweI	GCATC	1 cut(s)	1219
MaeI	CTAG	4 cut(s)	227, 428, 1233, 1308
MaeII	ACGT	1 cut(s)	204
MaeIII	GTNAC	1 cut(s)	539
MalI	GATC	4 cut(s)	44, 123, 161, 1322
MboI	GATC	4 cut(s)	42, 121, 159, 1320
MboII	GAAGA	4 cut(s)	608, 802, 836, 923
MfeI	CAATTG	1 cut(s)	756
MhlI	GDGCHC	1 cut(s)	900
MluCI	AATT	9 cut(s)	278, 433, 441, 723, 756, 793, 951, 1173, 1238
MlyI	GAGTC	2 cut(s)	489, 863
MmeI	TCCRAC	2 cut(s)	364, 1214
Mph1103I	ATGCAT	1 cut(s)	940
MroXI	GAANNNNTTC	1 cut(s)	1000
MseI	TTAA	5 cut(s)	138, 398, 437, 933, 968
MslI	CAYNNNNRTG	2 cut(s)	113, 906
MspA1I	CMGCKG	1 cut(s)	1223
MspI	CCGG	1 cut(s)	404
MunI	CAATTG	1 cut(s)	756
MwoI	GCNNNNNNNGC	2 cut(s)	193, 1229
NcoI	CCATGG	1 cut(s)	901
NdeII	GATC	4 cut(s)	42, 121, 159, 1320
NlaIII	CATG	7 cut(s)	112, 221, 305, 681, 905, 919, 1204
NlaIV	GGNNCC	5 cut(s)	55, 197, 508, 559, 921
NmuCI	GTSAC	1 cut(s)	539
NsiI	ATGCAT	1 cut(s)	940
NspI	RCATGY	1 cut(s)	681
PdmI	GAANNNNTTC	1 cut(s)	1000
PfeI	GAWTC	4 cut(s)	323, 422, 715, 1001
PflMI	CCANNNNNTGG	1 cut(s)	1084
PkrI	GCNGC	1 cut(s)	1222
Ple19I	CGATCG	1 cut(s)	45
PleI	GAGTC	2 cut(s)	488, 863
PpsI	GAGTC	2 cut(s)	488, 863
PpuMI	RGGWCCY	2 cut(s)	54, 920
PshAI	GACNNNNGTC	1 cut(s)	918
Psp5II	RGGWCCY	2 cut(s)	54, 920
PspN4I	GGNNCC	5 cut(s)	55, 197, 508, 559, 921
PspPI	GGNCC	3 cut(s)	54, 576, 920
PspPPI	RGGWCCY	2 cut(s)	54, 920
PvuI	CGATCG	1 cut(s)	45
RsaI	GTAC	2 cut(s)	238, 534
RsaNI	GTAC	2 cut(s)	237, 533
RseI	CAYNNNNRTG	2 cut(s)	113, 906
SalI	GTCGAC	1 cut(s)	152
SaqAI	TTAA	5 cut(s)	138, 398, 437, 933, 968
SatI	GCNGC	1 cut(s)	1221
Sau3AI	GATC	4 cut(s)	42, 121, 159, 1320
Sau96I	GGNCC	3 cut(s)	54, 576, 920
SchI	GAGTC	2 cut(s)	489, 863
SduI	GDGCHC	1 cut(s)	900
SfaNI	GCATC	1 cut(s)	1219
SfcI	CTRYAG	1 cut(s)	1264
SinI	GGWCC	3 cut(s)	54, 576, 920
SmiMI	CAYNNNNRTG	2 cut(s)	113, 906
SmlI	CTYRAG	3 cut(s)	960, 1244, 1274
SmoI	CTYRAG	3 cut(s)	960, 1244, 1274
Sse9I	AATT	9 cut(s)	278, 433, 441, 723, 756, 793, 951, 1173, 1238
SsiI	CCGC	2 cut(s)	582, 1221
SspMI	CTAG	4 cut(s)	227, 428, 1233, 1308
StyI	CCWWGG	2 cut(s)	63, 901
TaaI	ACNGT	1 cut(s)	992
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	5 cut(s)	153, 176, 326, 894, 1316
TasI	AATT	9 cut(s)	278, 433, 441, 723, 756, 793, 951, 1173, 1238
TauI	GCSGC	1 cut(s)	1223
TfiI	GAWTC	4 cut(s)	323, 422, 715, 1001
Tru1I	TTAA	5 cut(s)	138, 398, 437, 933, 968
Tru9I	TTAA	5 cut(s)	138, 398, 437, 933, 968
TscAI	CASTG	2 cut(s)	91, 702
TseFI	GTSAC	1 cut(s)	539
Tsp45I	GTSAC	1 cut(s)	539
TspDTI	ATGAA	7 cut(s)	125, 197, 253, 287, 837, 924, 1022
TspGWI	ACGGA	1 cut(s)	609
TspRI	CASTG	2 cut(s)	91, 702
Van91I	CCANNNNNTGG	1 cut(s)	1084
VpaK11BI	GGWCC	3 cut(s)	54, 576, 920
XapI	RAATTY	5 cut(s)	433, 441, 723, 1173, 1238
XceI	RCATGY	1 cut(s)	681
XcmI	CCANNNNNNNNNTGG	1 cut(s)	115
XmiI	GTMKAC	2 cut(s)	153, 1206
XmnI	GAANNNNTTC	1 cut(s)	1000
XspI	CTAG	4 cut(s)	227, 428, 1233, 1308
Zsp2I	ATGCAT	1 cut(s)	940

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.