Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0009897

Physical Location & Seq

Genomic Coordinates Forward (+)

60069288 .. 60077389

Gene Structure 8102 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG425100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGTTTATGATGCAGATCAAGAGGGAGATATCCATAATGAAGCTTGTGAGGCATCCCTATGTAGTTCGTTTGCACGAGGTTCTAGCGAGTCGGACCAAGATTTATATAATATTGGAGTTCATTACGGGTGGTGAATTGTTTGATAAAATCGTTCATCACGGACGTCTTAGCGAAGCTGAAGCCAGGAGATTCTTCCAACAGCTTATTGATGGAGTGGATTATTGCCACAGCAAGGGAGTGTATCATAGAGATTTAAAGCCGGAAAATCTTTTGCTTGATTCTCTTGGAAATTTAAGAATTTCAGATTTCGGTCTGAGTGCATTGCCTGAACAAGGAGTCAGCCTCCTTCGCACAACTTGTGGGACCCCTAACTATGTTGCACCTGAGGTCCTCAGTCACAAGGGTTATGATGGTGCCGTGGCAGATGTTTGGTCCTGTGGGGTCATCCTTTATGTTCTCATGGCTGGATATCTTCCATTTGATGAGCTTGACCTGACCACACTATATAGTAAGATTGAGAAAGCACAGTTCTCATGCCCAACTTGGTTTCCAGTGGGAGCAAAATCCTTGATTCATAGCATTCTGGATCCAAATCCTGCAACTCGTATTACGATTGAACAGATCAGAAATGACGAGTGGTTTCAGAAAAATTATGTTGCTCCCAAAATATTAGAATATGAAGATGTCAATCTGGATGATGTAAATGCTGTCTTCGATGAGACCGAGGAACAAAGGGATAGCGAGCACCAGAGCAATGAGGACATGAGTCCTTTAGTTCTTAATGCATTTGACTTGATCATCTTATCTCAAGGCCTAAACCTTTCAACAATGTTTGACCGTGGCAAGGATTGTATGAAGTATCAGACACGCTTTGTCTCACAAAAGCCAGCAAAGGTCGTACTATCAAGTATGGAAGTTGTTGCCCAATCAATGGGTTTCAAGACACACATTCGTAACTATAAGATGCGAGTGGAGGGTCTTTCGGCAAATAAAACTTCTCATTTCTCCATTATTCTCGAAATCTTTGAACTCGCTCCAACCTATTACATGGTAGACATTCAGAAAGCTGCTGGAGATGCTAGTGAATTCCTCAAGTTTTACAAGAACTTTTGTAGCAATCTTGAGGATATCATTTGGAAACCGCCTATTGAATCTAGCAAATCGAAAATCAGCAAGAGTAAAAGTAAAAAGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0010033 GO:0010035 GO:0010167 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022622 GO:0023052 GO:0032501 GO:0032502 GO:0034284 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

398

Amino Acids

45.47

Weight (kDa)

6.2

Isoelectric Point (pI)

44.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	5 - 214	5.7e-62	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	5 - 210	2.8e-31	Protein tyrosine and serine/threonine kinase
NAF	PF03822	257 - 315	4.5e-18	NAF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26980 AT4G24400 AT4G24400
fragaria_vesca	FvH4_5g33970 FvH4_5g33970 FvH4_5g33970
malus_domestica	MD08G1206900.v1.1 MD15G1390800.v1.1
prunus_persica	Prupe.1G539600_v2.0.a1 Prupe.1G539600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0233351
rosa_laevigata	RLG00000001276
rosa_multiflora	Rmu_sc0001736.1_g000001 Rmu_sc0008806.1_g000004
rosa_roxburghii	Rroxscaffold_3G00227350
rosa_rugosa	Rorug07G0280200
rosa_samantha	Rh7AG436000 Rh7BG408900 Rh7CG455300 Rh7DG425100
rosa_wichuraiana	Rw7G035870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	166
AccB1I	GGYRCC	1 cut(s)	413
AccB7I	CCANNNNNTGG	1 cut(s)	931
AccI	GTMKAC	1 cut(s)	1053
AciI	CCGC	1 cut(s)	1142
AclWI	GGATC	2 cut(s)	581, 594
AcsI	RAATTY	3 cut(s)	289, 297, 1085
AcuI	CTGAAG	1 cut(s)	198
AcyI	GRCGYC	1 cut(s)	163
AfaI	GTAC	1 cut(s)	900
AfiI	CCNNNNNNNGG	4 cut(s)	232, 332, 844, 931
AgsI	TTSAA	5 cut(s)	617, 825, 940, 1028, 1151
AjnI	CCWGG	1 cut(s)	182
AluBI	AGCT	5 cut(s)	43, 176, 202, 487, 1067
AluI	AGCT	5 cut(s)	43, 176, 202, 487, 1067
Alw21I	GWGCWC	1 cut(s)	747
Alw26I	GTCTC	2 cut(s)	713, 880
AlwI	GGATC	2 cut(s)	581, 594
AoxI	GGCC	1 cut(s)	811
ApeKI	GCWGC	1 cut(s)	1067
ApoI	RAATTY	3 cut(s)	289, 297, 1085
AspS9I	GGNCC	4 cut(s)	93, 363, 388, 432
AsuHPI	GGTGA	1 cut(s)	143
AvaII	GGWCC	4 cut(s)	93, 363, 388, 432
AxyI	CCTNAGG	1 cut(s)	384
BamHI	GGATCC	1 cut(s)	586
BanI	GGYRCC	1 cut(s)	413
BauI	CACGAG	1 cut(s)	74
BbsI	GAAGAC	1 cut(s)	703
Bbv12I	GWGCWC	1 cut(s)	747
BbvI	GCAGC	1 cut(s)	1054
BccI	CCATC	2 cut(s)	203, 404
BceAI	ACGGC	1 cut(s)	401
BciT130I	CCWGG	1 cut(s)	184
BclI	TGATCA	1 cut(s)	795
BcoDI	GTCTC	2 cut(s)	713, 880
BfaI	CTAG	3 cut(s)	83, 1080, 1155
BisI	GCNGC	1 cut(s)	1068
BlsI	GCNGC	1 cut(s)	1069
Bme1390I	CCNGG	1 cut(s)	184
Bme18I	GGWCC	4 cut(s)	93, 363, 388, 432
BmgT120I	GGNCC	4 cut(s)	93, 363, 388, 432
BmiI	GGNNCC	4 cut(s)	364, 365, 415, 588
BmrFI	CCNGG	1 cut(s)	184
BmsI	GCATC	3 cut(s)	61, 954, 1066
BoxI	GACNNNNGTC	1 cut(s)	765
BpiI	GAAGAC	1 cut(s)	703
BplI	GAGNNNNNCTC	2 cut(s)	327, 359
BpmI	CTGGAG	1 cut(s)	1092
BpuEI	CTTGAG	3 cut(s)	792, 1076, 1142
BsaBI	GATNNNNATC	3 cut(s)	14, 591, 687
BsaHI	GRCGYC	1 cut(s)	163
BsaI	GGTCTC	1 cut(s)	713
BsaJI	CCNNGG	3 cut(s)	417, 723, 838
Bsc4I	CCNNNNNNNGG	4 cut(s)	232, 332, 844, 931
Bse1I	ACTGG	1 cut(s)	551
Bse21I	CCTNAGG	1 cut(s)	384
Bse3DI	GCAATG	2 cut(s)	320, 760
Bse8I	GATNNNNATC	3 cut(s)	14, 591, 687
BseBI	CCWGG	1 cut(s)	184
BseDI	CCNNGG	3 cut(s)	417, 723, 838
BseGI	GGATG	3 cut(s)	52, 444, 700
BseJI	GATNNNNATC	3 cut(s)	14, 591, 687
BseLI	CCNNNNNNNGG	4 cut(s)	232, 332, 844, 931
BseMI	GCAATG	2 cut(s)	320, 760
BseMII	CTCAG	3 cut(s)	305, 375, 406
BseNI	ACTGG	1 cut(s)	551
BseXI	GCAGC	1 cut(s)	1054
BshFI	GGCC	1 cut(s)	813
BshNI	GGYRCC	1 cut(s)	413
BsiHKAI	GWGCWC	1 cut(s)	747
BsiSI	CCGG	1 cut(s)	260
BslFI	GGGAC	1 cut(s)	376
BslI	CCNNNNNNNGG	4 cut(s)	232, 332, 844, 931
BsmAI	GTCTC	2 cut(s)	713, 880
BsmFI	GGGAC	1 cut(s)	376
BsmI	GAATGC	1 cut(s)	579
BsnI	GGCC	1 cut(s)	813
Bso31I	GGTCTC	1 cut(s)	713
Bsp1286I	GDGCHC	1 cut(s)	747
Bsp143I	GATC	4 cut(s)	15, 586, 621, 795
BspACI	CCGC	1 cut(s)	1142
BspANI	GGCC	1 cut(s)	813
BspCNI	CTCAG	3 cut(s)	306, 376, 405
BspLI	GGNNCC	4 cut(s)	364, 365, 415, 588
BspPI	GGATC	2 cut(s)	581, 594
BspT107I	GGYRCC	1 cut(s)	413
BspTNI	GGTCTC	1 cut(s)	713
BsrDI	GCAATG	2 cut(s)	320, 760
BsrI	ACTGG	1 cut(s)	551
BssECI	CCNNGG	3 cut(s)	417, 723, 838
BssMI	GATC	4 cut(s)	15, 586, 621, 795
BssNI	GRCGYC	1 cut(s)	163
BssSI	CACGAG	1 cut(s)	74
Bst2BI	CACGAG	1 cut(s)	74
Bst2UI	CCWGG	1 cut(s)	184
Bst4CI	ACNGT	2 cut(s)	528, 839
BstACI	GRCGYC	1 cut(s)	163
BstC8I	GCNNGC	2 cut(s)	743, 888
BstDEI	CTNAG	4 cut(s)	167, 314, 384, 392
BstDSI	CCRYGG	2 cut(s)	417, 838
BstENI	CCTNNNNNAGG	1 cut(s)	330
BstF5I	GGATG	3 cut(s)	52, 444, 700
BstKTI	GATC	4 cut(s)	18, 589, 624, 798
BstMAI	GTCTC	2 cut(s)	713, 880
BstMBI	GATC	4 cut(s)	15, 586, 621, 795
BstMWI	GCNNNNNNNGC	3 cut(s)	49, 348, 1076
BstNI	CCWGG	1 cut(s)	184
BstPAI	GACNNNNGTC	1 cut(s)	765
BstSCI	CCNGG	1 cut(s)	182
BstV1I	GCAGC	1 cut(s)	1054
BstV2I	GAAGAC	1 cut(s)	703
BstX2I	RGATCY	1 cut(s)	586
BstYI	RGATCY	1 cut(s)	586
Bsu36I	CCTNAGG	1 cut(s)	384
BsuRI	GGCC	1 cut(s)	813
BtgI	CCRYGG	2 cut(s)	417, 838
BtsCI	GGATG	3 cut(s)	52, 444, 700
BtsIMutI	CAGTG	1 cut(s)	558
Cac8I	GCNNGC	2 cut(s)	743, 888
Cfr13I	GGNCC	4 cut(s)	93, 363, 388, 432
Csp6I	GTAC	1 cut(s)	899
CviAII	CATG	4 cut(s)	460, 534, 763, 1048
CviQI	GTAC	1 cut(s)	899
DdeI	CTNAG	4 cut(s)	167, 314, 384, 392
DpnI	GATC	4 cut(s)	17, 588, 623, 797
DpnII	GATC	4 cut(s)	15, 586, 621, 795
DraI	TTTAAA	1 cut(s)	255
Eco147I	AGGCCT	1 cut(s)	813
Eco31I	GGTCTC	1 cut(s)	713
Eco32I	GATATC	3 cut(s)	30, 470, 1129
Eco47I	GGWCC	4 cut(s)	93, 363, 388, 432
Eco57I	CTGAAG	1 cut(s)	198
Eco81I	CCTNAGG	1 cut(s)	384
EcoNI	CCTNNNNNAGG	1 cut(s)	330
EcoO109I	RGGNCCY	2 cut(s)	363, 388
EcoRI	GAATTC	1 cut(s)	1085
EcoRII	CCWGG	1 cut(s)	182
EcoRV	GATATC	3 cut(s)	30, 470, 1129
EcoT22I	ATGCAT	1 cut(s)	787
FaeI	CATG	4 cut(s)	463, 537, 766, 1051
FaqI	GGGAC	1 cut(s)	376
FatI	CATG	4 cut(s)	459, 533, 762, 1047
FbaI	TGATCA	1 cut(s)	795
FblI	GTMKAC	1 cut(s)	1053
Fnu4HI	GCNGC	1 cut(s)	1068
FokI	GGATG	3 cut(s)	39, 431, 707
Fsp4HI	GCNGC	1 cut(s)	1068
FspBI	CTAG	3 cut(s)	83, 1080, 1155
GluI	GCNGC	1 cut(s)	1068
GsuI	CTGGAG	1 cut(s)	1092
HaeIII	GGCC	1 cut(s)	813
HapII	CCGG	1 cut(s)	260
Hin1I	GRCGYC	1 cut(s)	163
Hin1II	CATG	4 cut(s)	463, 537, 766, 1051
HindIII	AAGCTT	1 cut(s)	41
HinfI	GANTC	7 cut(s)	88, 189, 278, 336, 571, 766, 1151
HpaII	CCGG	1 cut(s)	260
HphI	GGTGA	1 cut(s)	143
Hpy166II	GTNNAC	1 cut(s)	1054
Hpy188I	TCNGA	7 cut(s)	93, 304, 315, 626, 645, 864, 1062
Hpy188III	TCNNGA	6 cut(s)	19, 584, 692, 940, 1016, 1121
Hpy8I	GTNNAC	1 cut(s)	1054
HpyAV	CCTTC	1 cut(s)	356
HpyCH4III	ACNGT	2 cut(s)	528, 839
HpyCH4IV	ACGT	1 cut(s)	163
HpyCH4V	TGCA	6 cut(s)	13, 73, 320, 380, 599, 785
HpyF10VI	GCNNNNNNNGC	3 cut(s)	49, 348, 1076
HpyF3I	CTNAG	4 cut(s)	167, 314, 384, 392
HpySE526I	ACGT	1 cut(s)	163
Hsp92I	GRCGYC	1 cut(s)	163
Hsp92II	CATG	4 cut(s)	463, 537, 766, 1051
KflI	GGGWCCC	1 cut(s)	363
Ksp22I	TGATCA	1 cut(s)	795
Kzo9I	GATC	4 cut(s)	15, 586, 621, 795
LmnI	GCTCC	3 cut(s)	557, 664, 1039
Lsp1109I	GCAGC	1 cut(s)	1054
LweI	GCATC	3 cut(s)	61, 954, 1066
MaeI	CTAG	3 cut(s)	83, 1080, 1155
MaeII	ACGT	1 cut(s)	163
MaeIII	GTNAC	2 cut(s)	395, 953
MalI	GATC	4 cut(s)	17, 588, 623, 797
MboI	GATC	4 cut(s)	15, 586, 621, 795
MboII	GAAGA	4 cut(s)	184, 464, 692, 703
MflI	RGATCY	1 cut(s)	586
MhlI	GDGCHC	1 cut(s)	747
MluCI	AATT	5 cut(s)	134, 289, 297, 649, 1085
MlyI	GAGTC	3 cut(s)	97, 345, 775
MmeI	TCCRAC	3 cut(s)	71, 220, 1061
Mph1103I	ATGCAT	1 cut(s)	787
MseI	TTAA	3 cut(s)	254, 293, 780
MslI	CAYNNNNRTG	1 cut(s)	57
MspI	CCGG	1 cut(s)	260
MspR9I	CCNGG	1 cut(s)	184
Mva1269I	GAATGC	1 cut(s)	579
MvaI	CCWGG	1 cut(s)	184
MwoI	GCNNNNNNNGC	3 cut(s)	49, 348, 1076
NdeII	GATC	4 cut(s)	15, 586, 621, 795
NlaIII	CATG	4 cut(s)	463, 537, 766, 1051
NlaIV	GGNNCC	4 cut(s)	364, 365, 415, 588
NmuCI	GTSAC	1 cut(s)	395
NsiI	ATGCAT	1 cut(s)	787
PceI	AGGCCT	1 cut(s)	813
PcsI	WCGNNNNNNNCGW	1 cut(s)	720
PctI	GAATGC	1 cut(s)	579
PfeI	GAWTC	4 cut(s)	189, 278, 571, 1151
PflMI	CCANNNNNTGG	1 cut(s)	931
PkrI	GCNGC	1 cut(s)	1069
PleI	GAGTC	3 cut(s)	96, 344, 774
PpsI	GAGTC	3 cut(s)	96, 344, 774
PpuMI	RGGWCCY	2 cut(s)	363, 388
PshAI	GACNNNNGTC	1 cut(s)	765
Psp5II	RGGWCCY	2 cut(s)	363, 388
Psp6I	CCWGG	1 cut(s)	182
PspGI	CCWGG	1 cut(s)	182
PspN4I	GGNNCC	4 cut(s)	364, 365, 415, 588
PspPI	GGNCC	4 cut(s)	93, 363, 388, 432
PspPPI	RGGWCCY	2 cut(s)	363, 388
PsuI	RGATCY	1 cut(s)	586
RsaI	GTAC	1 cut(s)	900
RsaNI	GTAC	1 cut(s)	899
RseI	CAYNNNNRTG	1 cut(s)	57
SaqAI	TTAA	3 cut(s)	254, 293, 780
SatI	GCNGC	1 cut(s)	1068
Sau3AI	GATC	4 cut(s)	15, 586, 621, 795
Sau96I	GGNCC	4 cut(s)	93, 363, 388, 432
SchI	GAGTC	3 cut(s)	97, 345, 775
ScrFI	CCNGG	1 cut(s)	184
SduI	GDGCHC	1 cut(s)	747
SfaNI	GCATC	3 cut(s)	61, 954, 1066
SinI	GGWCC	4 cut(s)	93, 363, 388, 432
SmiMI	CAYNNNNRTG	1 cut(s)	57
SmlI	CTYRAG	3 cut(s)	807, 1091, 1121
SmoI	CTYRAG	3 cut(s)	807, 1091, 1121
Sse9I	AATT	5 cut(s)	134, 289, 297, 649, 1085
SseBI	AGGCCT	1 cut(s)	813
SsiI	CCGC	1 cut(s)	1142
SspI	AATATT	2 cut(s)	111, 669
SspMI	CTAG	3 cut(s)	83, 1080, 1155
StuI	AGGCCT	1 cut(s)	813
StyD4I	CCNGG	1 cut(s)	182
TaaI	ACNGT	2 cut(s)	528, 839
TaiI	ACGT	1 cut(s)	166
TaqI	TCGA	3 cut(s)	714, 1017, 1163
TaqII	GACCGA	2 cut(s)	299, 737
TasI	AATT	5 cut(s)	134, 289, 297, 649, 1085
TfiI	GAWTC	4 cut(s)	189, 278, 571, 1151
Tru1I	TTAA	3 cut(s)	254, 293, 780
Tru9I	TTAA	3 cut(s)	254, 293, 780
TscAI	CASTG	1 cut(s)	558
TseFI	GTSAC	1 cut(s)	395
TseI	GCWGC	1 cut(s)	1067
Tsp45I	GTSAC	1 cut(s)	395
TspDTI	ATGAA	6 cut(s)	53, 109, 143, 563, 693, 869
TspGWI	ACGGA	1 cut(s)	174
TspRI	CASTG	1 cut(s)	558
Van91I	CCANNNNNTGG	1 cut(s)	931
VpaK11BI	GGWCC	4 cut(s)	93, 363, 388, 432
XagI	CCTNNNNNAGG	1 cut(s)	330
XapI	RAATTY	3 cut(s)	289, 297, 1085
XmiI	GTMKAC	1 cut(s)	1053
XspI	CTAG	3 cut(s)	83, 1080, 1155
ZraI	GACGTC	1 cut(s)	164
Zsp2I	ATGCAT	1 cut(s)	787

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.