Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0009897

Physical Location & Seq

Genomic Coordinates Forward (+)

45950353 .. 45956464

Gene Structure 6112 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG408900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGTGGTCAGGAAAGTGGGTAAGTATGAAATTGGGAGGACGATCGGCGAAGGAACCTTTGCGAAGGTGAAGTTTGCCCAGAATACTGAGACCGGTGAGAGTGTGGCCATGAAGATAATCGATCGGAGTTCCATCATCAAGCACAAGATGGTCGACCAGATCAAGAGGGAGATATCCATAATGAAGCTTGTGAGGCATCCCTATGTAGTTCGTTTGCACGAGGTTCTAGCGAGTCGGACCAAGATTTATATAATATTGGAGTTCATTACGGGTGGTGAATTGTTTGATAAAATCGTTCATCACGGACGTCTTAGCGAAGGTGAAGCCAGGAGATTCTTCCAACAGCTTATTGATGGAGTGGATTATTGCCACAGCAAGGGAGTGTATCATAGAGATTTAAAGCCGGAAAATCTTTTGCTTGATTCTCTTGGAAATTTAAGAATTTCAGATTTTGGTCTGAGTGCATTGCCTGAACAAGGAGTCAGCCTCCTTCGCACAACTTGTGGGACCCCTAACTATGTTGCACCTGAGGTCCTCAGTCACAAGGGTTATGATGGTGCCGTGGCAGATGTTTGGTCCTGTGGGGTCATCCTTTATGTTCTCATGGCTGGATATCTTCCATTTGATGAGCTTGACCTGACCACACTATATAGTAAGATTGAGAAAGCACAGTTCTCATGCCCAACTTGGTTTCCAGTGGGAGCAAAATCCTTGATTCATAGCATTCTGGATCCAAATCCTGCAACTCGTATTACGATTGAACAGATCAGAAATGATGAGTGGTTTCAGAAAAATTACGTTGCTCCCAAAATATTAGAATATGAAGATGTAAATCTGGATGATGTAAATGCTGTCTTCGACGAGACCGAGGAACAAAGGGATAGCAAGCACCAGAGCAATGAGGACATGAGTCCTTTAGTTCTTAATGCATTTGACTTGATCATCTTATCTCAAGGCCTAAACCTTGCAACAATGTTTGACCGTGGCAAGGTAAGACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0010033 GO:0010035 GO:0010167 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022622 GO:0023052 GO:0032501 GO:0032502 GO:0034284 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

333

Amino Acids

37.76

Weight (kDa)

6.02

Isoelectric Point (pI)

40.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	9 - 262	6.4e-74	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	10 - 258	4.1e-38	Protein tyrosine and serine/threonine kinase
NAF	PF03822	305 - 328	2.5e-06	NAF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26980 AT4G24400 AT4G24400
fragaria_vesca	FvH4_5g33970 FvH4_5g33970 FvH4_5g33970
malus_domestica	MD08G1206900.v1.1 MD15G1390800.v1.1
prunus_persica	Prupe.1G539600_v2.0.a1 Prupe.1G539600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0233351
rosa_laevigata	RLG00000001276
rosa_multiflora	Rmu_sc0001736.1_g000001 Rmu_sc0008806.1_g000004
rosa_roxburghii	Rroxscaffold_3G00227350
rosa_rugosa	Rorug07G0280200
rosa_samantha	Rh7AG436000 Rh7BG408900 Rh7CG455300 Rh7DG425100
rosa_wichuraiana	Rw7G035870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	310
AccB1I	GGYRCC	1 cut(s)	557
AccI	GTMKAC	1 cut(s)	153
AclWI	GGATC	2 cut(s)	725, 738
AcoI	YGGCCR	1 cut(s)	105
AcsI	RAATTY	2 cut(s)	433, 441
AcyI	GRCGYC	1 cut(s)	307
AfiI	CCNNNNNNNGG	3 cut(s)	376, 476, 988
AgeI	ACCGGT	1 cut(s)	92
AgsI	TTSAA	1 cut(s)	761
AjnI	CCWGG	1 cut(s)	326
AluBI	AGCT	3 cut(s)	187, 346, 631
AluI	AGCT	3 cut(s)	187, 346, 631
Alw26I	GTCTC	2 cut(s)	83, 857
AlwI	GGATC	2 cut(s)	725, 738
AoxI	GGCC	2 cut(s)	105, 955
ApoI	RAATTY	2 cut(s)	433, 441
AsiGI	ACCGGT	1 cut(s)	92
AspS9I	GGNCC	4 cut(s)	237, 507, 532, 576
AsuHPI	GGTGA	4 cut(s)	79, 107, 287, 332
AvaII	GGWCC	4 cut(s)	237, 507, 532, 576
AxyI	CCTNAGG	1 cut(s)	528
BalI	TGGCCA	1 cut(s)	107
BamHI	GGATCC	1 cut(s)	730
BanI	GGYRCC	1 cut(s)	557
BauI	CACGAG	1 cut(s)	218
BbsI	GAAGAC	1 cut(s)	847
BccI	CCATC	4 cut(s)	140, 142, 347, 548
BceAI	ACGGC	1 cut(s)	545
BciT130I	CCWGG	1 cut(s)	328
BclI	TGATCA	1 cut(s)	939
BcoDI	GTCTC	2 cut(s)	83, 857
BfaI	CTAG	1 cut(s)	227
Bme1390I	CCNGG	1 cut(s)	328
Bme18I	GGWCC	4 cut(s)	237, 507, 532, 576
BmgT120I	GGNCC	4 cut(s)	237, 507, 532, 576
BmiI	GGNNCC	5 cut(s)	55, 508, 509, 559, 732
BmrFI	CCNGG	1 cut(s)	328
BmsI	GCATC	1 cut(s)	205
BoxI	GACNNNNGTC	1 cut(s)	909
BpiI	GAAGAC	1 cut(s)	847
BplI	GAGNNNNNCTC	2 cut(s)	471, 503
BpuEI	CTTGAG	1 cut(s)	936
Bsa29I	ATCGAT	1 cut(s)	120
BsaBI	GATNNNNATC	2 cut(s)	735, 831
BsaHI	GRCGYC	1 cut(s)	307
BsaI	GGTCTC	2 cut(s)	83, 857
BsaJI	CCNNGG	3 cut(s)	561, 867, 982
BsaWI	WCCGGW	1 cut(s)	92
Bsc4I	CCNNNNNNNGG	3 cut(s)	376, 476, 988
Bse118I	RCCGGY	1 cut(s)	92
Bse1I	ACTGG	1 cut(s)	695
Bse21I	CCTNAGG	1 cut(s)	528
Bse3DI	GCAATG	2 cut(s)	464, 904
Bse8I	GATNNNNATC	2 cut(s)	735, 831
BseBI	CCWGG	1 cut(s)	328
BseCI	ATCGAT	1 cut(s)	120
BseDI	CCNNGG	3 cut(s)	561, 867, 982
BseGI	GGATG	3 cut(s)	196, 588, 844
BseJI	GATNNNNATC	2 cut(s)	735, 831
BseLI	CCNNNNNNNGG	3 cut(s)	376, 476, 988
BseMI	GCAATG	2 cut(s)	464, 904
BseMII	CTCAG	4 cut(s)	78, 449, 519, 550
BseNI	ACTGG	1 cut(s)	695
Bsh1285I	CGRYCG	2 cut(s)	45, 124
BshFI	GGCC	2 cut(s)	107, 957
BshNI	GGYRCC	1 cut(s)	557
BshTI	ACCGGT	1 cut(s)	92
BshVI	ATCGAT	1 cut(s)	120
BsiEI	CGRYCG	2 cut(s)	45, 124
BsiSI	CCGG	2 cut(s)	93, 404
BslFI	GGGAC	1 cut(s)	520
BslI	CCNNNNNNNGG	3 cut(s)	376, 476, 988
BsmAI	GTCTC	2 cut(s)	83, 857
BsmFI	GGGAC	1 cut(s)	520
BsmI	GAATGC	1 cut(s)	723
BsnI	GGCC	2 cut(s)	107, 957
Bso31I	GGTCTC	2 cut(s)	83, 857
Bsp143I	GATC	6 cut(s)	42, 121, 159, 730, 765, 939
BspANI	GGCC	2 cut(s)	107, 957
BspCNI	CTCAG	4 cut(s)	79, 450, 520, 549
BspDI	ATCGAT	1 cut(s)	120
BspLI	GGNNCC	5 cut(s)	55, 508, 509, 559, 732
BspPI	GGATC	2 cut(s)	725, 738
BspT107I	GGYRCC	1 cut(s)	557
BspTNI	GGTCTC	2 cut(s)	83, 857
BsrDI	GCAATG	2 cut(s)	464, 904
BsrFI	RCCGGY	1 cut(s)	92
BsrI	ACTGG	1 cut(s)	695
BssAI	RCCGGY	1 cut(s)	92
BssECI	CCNNGG	3 cut(s)	561, 867, 982
BssMI	GATC	6 cut(s)	42, 121, 159, 730, 765, 939
BssNI	GRCGYC	1 cut(s)	307
BssSI	CACGAG	1 cut(s)	218
Bst2BI	CACGAG	1 cut(s)	218
Bst2UI	CCWGG	1 cut(s)	328
Bst4CI	ACNGT	2 cut(s)	672, 983
BstACI	GRCGYC	1 cut(s)	307
BstC8I	GCNNGC	1 cut(s)	887
BstDEI	CTNAG	5 cut(s)	87, 311, 458, 528, 536
BstDSI	CCRYGG	2 cut(s)	561, 982
BstENI	CCTNNNNNAGG	1 cut(s)	474
BstF5I	GGATG	3 cut(s)	196, 588, 844
BstKTI	GATC	6 cut(s)	45, 124, 162, 733, 768, 942
BstMAI	GTCTC	2 cut(s)	83, 857
BstMBI	GATC	6 cut(s)	42, 121, 159, 730, 765, 939
BstMCI	CGRYCG	2 cut(s)	45, 124
BstMWI	GCNNNNNNNGC	2 cut(s)	193, 492
BstNI	CCWGG	1 cut(s)	328
BstPAI	GACNNNNGTC	1 cut(s)	909
BstSCI	CCNGG	1 cut(s)	326
BstV2I	GAAGAC	1 cut(s)	847
BstX2I	RGATCY	1 cut(s)	730
BstYI	RGATCY	1 cut(s)	730
Bsu15I	ATCGAT	1 cut(s)	120
Bsu36I	CCTNAGG	1 cut(s)	528
BsuRI	GGCC	2 cut(s)	107, 957
BsuTUI	ATCGAT	1 cut(s)	120
BtgI	CCRYGG	2 cut(s)	561, 982
BtsCI	GGATG	3 cut(s)	196, 588, 844
BtsIMutI	CAGTG	1 cut(s)	702
Cac8I	GCNNGC	1 cut(s)	887
Cfr10I	RCCGGY	1 cut(s)	92
Cfr13I	GGNCC	4 cut(s)	237, 507, 532, 576
ClaI	ATCGAT	1 cut(s)	120
CspAI	ACCGGT	1 cut(s)	92
CviAII	CATG	4 cut(s)	109, 604, 678, 907
CviJI	RGCY	9 cut(s)	107, 187, 326, 346, 403, 486, 608, 631, 957
CviKI_1	RGCY	9 cut(s)	107, 187, 326, 346, 403, 486, 608, 631, 957
DdeI	CTNAG	5 cut(s)	87, 311, 458, 528, 536
DpnI	GATC	6 cut(s)	44, 123, 161, 732, 767, 941
DpnII	GATC	6 cut(s)	42, 121, 159, 730, 765, 939
DraI	TTTAAA	1 cut(s)	399
EaeI	YGGCCR	1 cut(s)	105
Eco147I	AGGCCT	1 cut(s)	957
Eco31I	GGTCTC	2 cut(s)	83, 857
Eco32I	GATATC	2 cut(s)	174, 614
Eco47I	GGWCC	4 cut(s)	237, 507, 532, 576
Eco81I	CCTNAGG	1 cut(s)	528
EcoNI	CCTNNNNNAGG	1 cut(s)	474
EcoO109I	RGGNCCY	2 cut(s)	507, 532
EcoRII	CCWGG	1 cut(s)	326
EcoRV	GATATC	2 cut(s)	174, 614
EcoT22I	ATGCAT	1 cut(s)	931
FaeI	CATG	4 cut(s)	112, 607, 681, 910
FaqI	GGGAC	1 cut(s)	520
FatI	CATG	4 cut(s)	108, 603, 677, 906
FbaI	TGATCA	1 cut(s)	939
FblI	GTMKAC	1 cut(s)	153
FokI	GGATG	3 cut(s)	183, 575, 851
FspBI	CTAG	1 cut(s)	227
HaeIII	GGCC	2 cut(s)	107, 957
HapII	CCGG	2 cut(s)	93, 404
Hin1I	GRCGYC	1 cut(s)	307
Hin1II	CATG	4 cut(s)	112, 607, 681, 910
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	6 cut(s)	232, 333, 422, 480, 715, 910
HpaII	CCGG	2 cut(s)	93, 404
HphI	GGTGA	4 cut(s)	79, 107, 287, 332
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	6 cut(s)	126, 237, 448, 459, 770, 789
Hpy188III	TCNNGA	4 cut(s)	10, 163, 728, 836
Hpy8I	GTNNAC	1 cut(s)	154
Hpy99I	CGWCG	1 cut(s)	863
HpyAV	CCTTC	4 cut(s)	44, 58, 311, 500
HpyCH4III	ACNGT	2 cut(s)	672, 983
HpyCH4IV	ACGT	2 cut(s)	307, 798
HpyCH4V	TGCA	6 cut(s)	217, 464, 524, 743, 929, 968
HpyF10VI	GCNNNNNNNGC	2 cut(s)	193, 492
HpyF3I	CTNAG	5 cut(s)	87, 311, 458, 528, 536
HpySE526I	ACGT	2 cut(s)	307, 798
Hsp92I	GRCGYC	1 cut(s)	307
Hsp92II	CATG	4 cut(s)	112, 607, 681, 910
KflI	GGGWCCC	1 cut(s)	507
Ksp22I	TGATCA	1 cut(s)	939
Kzo9I	GATC	6 cut(s)	42, 121, 159, 730, 765, 939
LmnI	GCTCC	2 cut(s)	701, 808
LweI	GCATC	1 cut(s)	205
MaeI	CTAG	1 cut(s)	227
MaeII	ACGT	2 cut(s)	307, 798
MaeIII	GTNAC	1 cut(s)	539
MalI	GATC	6 cut(s)	44, 123, 161, 732, 767, 941
MboI	GATC	6 cut(s)	42, 121, 159, 730, 765, 939
MboII	GAAGA	5 cut(s)	124, 328, 608, 836, 847
MflI	RGATCY	1 cut(s)	730
MlsI	TGGCCA	1 cut(s)	107
MluCI	AATT	5 cut(s)	30, 278, 433, 441, 793
MluNI	TGGCCA	1 cut(s)	107
MlyI	GAGTC	3 cut(s)	241, 489, 919
MmeI	TCCRAC	2 cut(s)	215, 364
MnlI	CCTC	9 cut(s)	30, 159, 186, 214, 497, 523, 545, 862, 895
Mox20I	TGGCCA	1 cut(s)	107
Mph1103I	ATGCAT	1 cut(s)	931
MscI	TGGCCA	1 cut(s)	107
MseI	TTAA	3 cut(s)	398, 437, 924
MslI	CAYNNNNRTG	1 cut(s)	201
Msp20I	TGGCCA	1 cut(s)	107
MspI	CCGG	2 cut(s)	93, 404
MspR9I	CCNGG	1 cut(s)	328
Mva1269I	GAATGC	1 cut(s)	723
MvaI	CCWGG	1 cut(s)	328
MwoI	GCNNNNNNNGC	2 cut(s)	193, 492
NdeII	GATC	6 cut(s)	42, 121, 159, 730, 765, 939
NlaIII	CATG	4 cut(s)	112, 607, 681, 910
NlaIV	GGNNCC	5 cut(s)	55, 508, 509, 559, 732
NmuCI	GTSAC	1 cut(s)	539
NsiI	ATGCAT	1 cut(s)	931
PceI	AGGCCT	1 cut(s)	957
PcsI	WCGNNNNNNNCGW	1 cut(s)	864
PctI	GAATGC	1 cut(s)	723
PfeI	GAWTC	3 cut(s)	333, 422, 715
PinAI	ACCGGT	1 cut(s)	92
Ple19I	CGATCG	2 cut(s)	45, 124
PleI	GAGTC	3 cut(s)	240, 488, 918
PpsI	GAGTC	3 cut(s)	240, 488, 918
PpuMI	RGGWCCY	2 cut(s)	507, 532
PshAI	GACNNNNGTC	1 cut(s)	909
Psp5II	RGGWCCY	2 cut(s)	507, 532
Psp6I	CCWGG	1 cut(s)	326
PspGI	CCWGG	1 cut(s)	326
PspN4I	GGNNCC	5 cut(s)	55, 508, 509, 559, 732
PspPI	GGNCC	4 cut(s)	237, 507, 532, 576
PspPPI	RGGWCCY	2 cut(s)	507, 532
PsuI	RGATCY	1 cut(s)	730
PvuI	CGATCG	2 cut(s)	45, 124
RseI	CAYNNNNRTG	1 cut(s)	201
SalI	GTCGAC	1 cut(s)	152
SaqAI	TTAA	3 cut(s)	398, 437, 924
Sau3AI	GATC	6 cut(s)	42, 121, 159, 730, 765, 939
Sau96I	GGNCC	4 cut(s)	237, 507, 532, 576
SchI	GAGTC	3 cut(s)	241, 489, 919
ScrFI	CCNGG	1 cut(s)	328
SfaNI	GCATC	1 cut(s)	205
SinI	GGWCC	4 cut(s)	237, 507, 532, 576
SmiMI	CAYNNNNRTG	1 cut(s)	201
SmlI	CTYRAG	1 cut(s)	951
SmoI	CTYRAG	1 cut(s)	951
Sse9I	AATT	5 cut(s)	30, 278, 433, 441, 793
SseBI	AGGCCT	1 cut(s)	957
SspI	AATATT	2 cut(s)	255, 813
SspMI	CTAG	1 cut(s)	227
StuI	AGGCCT	1 cut(s)	957
StyD4I	CCNGG	1 cut(s)	326
TaaI	ACNGT	2 cut(s)	672, 983
TaiI	ACGT	2 cut(s)	310, 801
TaqI	TCGA	3 cut(s)	120, 153, 858
TaqII	GACCGA	1 cut(s)	881
TasI	AATT	5 cut(s)	30, 278, 433, 441, 793
TfiI	GAWTC	3 cut(s)	333, 422, 715
Tru1I	TTAA	3 cut(s)	398, 437, 924
Tru9I	TTAA	3 cut(s)	398, 437, 924
TscAI	CASTG	1 cut(s)	702
TseFI	GTSAC	1 cut(s)	539
Tsp45I	GTSAC	1 cut(s)	539
TspDTI	ATGAA	7 cut(s)	42, 125, 197, 253, 287, 707, 837
TspGWI	ACGGA	1 cut(s)	318
TspRI	CASTG	1 cut(s)	702
VpaK11BI	GGWCC	4 cut(s)	237, 507, 532, 576
XagI	CCTNNNNNAGG	1 cut(s)	474
XapI	RAATTY	2 cut(s)	433, 441
XmiI	GTMKAC	1 cut(s)	153
XspI	CTAG	1 cut(s)	227
ZraI	GACGTC	1 cut(s)	308
Zsp2I	ATGCAT	1 cut(s)	931

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.