Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0009897

Physical Location & Seq

Genomic Coordinates Reverse (-)

13298540 .. 13304718

Gene Structure 6179 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001276

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

ATGGTGGTCAGGAAAGTGGGTAAGTATGAAATTGGGAGGACGATCGGCGAAGGAACCTTTGCGAAGGTGAAGTTTGCTCAGAACACTGAGACAGGTGAGAGTGTGGCCATGAAGATAATCGATCGGAGTTCCATCATCAAGCACAAGATGGTCGATCAGATCAAGAGGGAGATATCAATAATGAAGCTTGTGAGGCATCCCTATGTAGTTCGTTTGCACGAGGTTCTAGCGAGTCGGACCAAGATTTATATAATATTGGAGTTCATTACGGGTGGTGAATTGTTTGATAAAATCGTTCATCATGGACGTCTTAGCGAAGCTGAAGCCAGGAGATTCTTCCAACAGCTTATTGATGGAGTGGATTATTGCCACAGCAAGGGAGTGTATCATAGAGATTTAAAGCCGGAAAATCTTTTGCTTGATTCTCTTGGAAATTTAAGAATTTCAGATTTTGGTCTGAGTGCATTGCCTGAACAAGTAAGATTTTGGTCTCATCTCGGAGTCAGCCTCCTTCGCACAACTTGTGGGACCCCTAACTATGTTGCACCTGAGGTCCTCAGTCACAAGGGTTATGATGGTGCCGTGGCAGATGTTTGGTCCTGTGGGGTCATCCTTTATGTTCTCATGGCTGGATATCTTCCATTTGATGAGCTTGACCTGACCACACTATATAGTAAGATTGAGAAAGCACAGTTCTCATGCCCAACTTGGTTTCCAGTGGGAGCAAAATCCTTGATTCATAGCATTCTGGATCCAAATCCTGCAACTCGTATTACAATTGAACAGATCAGAAATGATGAGTGGTTTCAGAAAAATTACGTTGCTCCCAAAATATTAGAATATGAAGATGTAAATCTCGATGATGTAAATGCTGTCTTCGACGAGACCGAGGAACAAAGGGATAGCAAGCACCAGAGCAATGAGGACATGAGTCCTTTAGTTCTTAATGCATTTGACTTGATCATCTTATCTCAAGGCCTAAACCTAGCAACAATGTTCGACCGTGGCAAGGATTGTATGAAGTATCAGACACGCTTTGTCTCACAAAAGCCAGCAAAGGTTGTGCTATCAAGTATGGAAGTTGTTGCACAATCAATGGGTTTCAAGACACACATTCGTAACTATAAGATGCGAGTGGAGGGTCTTTCGGCAAATAAAACTTCTCATTTCTCCATTATTCTCGAAATTTTTGAACTCGCTCCAACCTATTACATGGTAGACATTCAGAAAGCTGCTGGAGATGCTAGTGAATTCCTCAAGTTTTACGAGAACTTTTGTAGCAATCTTGAGGATATCATTTGGAAACCGCCTACTGAATCTGGCAAATCAAAAATCAGCAAGAGTAAAAGTAAAAAGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0010033 GO:0010035 GO:0010167 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022622 GO:0023052 GO:0032501 GO:0032502 GO:0034284 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

454

Amino Acids

51.58

Weight (kDa)

7.23

Isoelectric Point (pI)

40.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	9 - 269	6.4e-72	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	10 - 265	2e-36	Protein tyrosine and serine/threonine kinase
NAF	PF03822	312 - 370	4.2e-17	NAF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26980 AT4G24400 AT4G24400
fragaria_vesca	FvH4_5g33970 FvH4_5g33970 FvH4_5g33970
malus_domestica	MD08G1206900.v1.1 MD15G1390800.v1.1
prunus_persica	Prupe.1G539600_v2.0.a1 Prupe.1G539600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0233351
rosa_laevigata	RLG00000001276
rosa_multiflora	Rmu_sc0001736.1_g000001 Rmu_sc0008806.1_g000004
rosa_roxburghii	Rroxscaffold_3G00227350
rosa_rugosa	Rorug07G0280200
rosa_samantha	Rh7AG436000 Rh7BG408900 Rh7CG455300 Rh7DG425100
rosa_wichuraiana	Rw7G035870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	310
AccB1I	GGYRCC	1 cut(s)	578
AccI	GTMKAC	1 cut(s)	1218
AciI	CCGC	1 cut(s)	1307
AclWI	GGATC	2 cut(s)	746, 759
AcoI	YGGCCR	1 cut(s)	105
AcsI	RAATTY	4 cut(s)	433, 441, 1185, 1250
AcuI	CTGAAG	1 cut(s)	342
AcyI	GRCGYC	1 cut(s)	307
AfiI	CCNNNNNNNGG	2 cut(s)	376, 1009
AgsI	TTSAA	3 cut(s)	782, 1105, 1193
AjnI	CCWGG	1 cut(s)	326
AluBI	AGCT	5 cut(s)	187, 320, 346, 652, 1232
AluI	AGCT	5 cut(s)	187, 320, 346, 652, 1232
Alw26I	GTCTC	4 cut(s)	83, 495, 878, 1045
AlwI	GGATC	2 cut(s)	746, 759
AoxI	GGCC	2 cut(s)	105, 976
ApeKI	GCWGC	1 cut(s)	1232
ApoI	RAATTY	4 cut(s)	433, 441, 1185, 1250
AspS9I	GGNCC	4 cut(s)	237, 528, 553, 597
AsuHPI	GGTGA	3 cut(s)	79, 107, 287
AvaII	GGWCC	4 cut(s)	237, 528, 553, 597
AxyI	CCTNAGG	1 cut(s)	549
BalI	TGGCCA	1 cut(s)	107
BamHI	GGATCC	1 cut(s)	751
BanI	GGYRCC	1 cut(s)	578
BauI	CACGAG	1 cut(s)	218
BbsI	GAAGAC	1 cut(s)	868
BbvI	GCAGC	1 cut(s)	1219
BccI	CCATC	4 cut(s)	140, 142, 347, 569
BceAI	ACGGC	1 cut(s)	566
BciT130I	CCWGG	1 cut(s)	328
BclI	TGATCA	1 cut(s)	960
BcoDI	GTCTC	4 cut(s)	83, 495, 878, 1045
BfaI	CTAG	3 cut(s)	227, 986, 1245
BisI	GCNGC	1 cut(s)	1233
BlsI	GCNGC	1 cut(s)	1234
Bme1390I	CCNGG	1 cut(s)	328
Bme18I	GGWCC	4 cut(s)	237, 528, 553, 597
BmgT120I	GGNCC	4 cut(s)	237, 528, 553, 597
BmiI	GGNNCC	5 cut(s)	55, 529, 530, 580, 753
BmrFI	CCNGG	1 cut(s)	328
BmsI	GCATC	3 cut(s)	205, 1119, 1231
BoxI	GACNNNNGTC	1 cut(s)	930
BpiI	GAAGAC	1 cut(s)	868
BplI	GAGNNNNNCTC	2 cut(s)	492, 524
BpmI	CTGGAG	1 cut(s)	1257
BpuEI	CTTGAG	3 cut(s)	957, 1241, 1307
Bsa29I	ATCGAT	1 cut(s)	120
BsaBI	GATNNNNATC	2 cut(s)	756, 852
BsaHI	GRCGYC	1 cut(s)	307
BsaI	GGTCTC	2 cut(s)	495, 878
BsaJI	CCNNGG	3 cut(s)	582, 888, 1003
Bsc4I	CCNNNNNNNGG	2 cut(s)	376, 1009
Bse1I	ACTGG	1 cut(s)	716
Bse21I	CCTNAGG	1 cut(s)	549
Bse3DI	GCAATG	2 cut(s)	464, 925
Bse8I	GATNNNNATC	2 cut(s)	756, 852
BseBI	CCWGG	1 cut(s)	328
BseCI	ATCGAT	1 cut(s)	120
BseDI	CCNNGG	3 cut(s)	582, 888, 1003
BseGI	GGATG	2 cut(s)	196, 609
BseJI	GATNNNNATC	2 cut(s)	756, 852
BseLI	CCNNNNNNNGG	2 cut(s)	376, 1009
BseMI	GCAATG	2 cut(s)	464, 925
BseMII	CTCAG	5 cut(s)	78, 92, 449, 540, 571
BseNI	ACTGG	1 cut(s)	716
BseXI	GCAGC	1 cut(s)	1219
Bsh1285I	CGRYCG	3 cut(s)	45, 124, 1003
BshFI	GGCC	2 cut(s)	107, 978
BshNI	GGYRCC	1 cut(s)	578
BshVI	ATCGAT	1 cut(s)	120
BsiEI	CGRYCG	3 cut(s)	45, 124, 1003
BsiSI	CCGG	1 cut(s)	404
BslFI	GGGAC	1 cut(s)	541
BslI	CCNNNNNNNGG	2 cut(s)	376, 1009
BsmAI	GTCTC	4 cut(s)	83, 495, 878, 1045
BsmFI	GGGAC	1 cut(s)	541
BsmI	GAATGC	1 cut(s)	744
BsnI	GGCC	2 cut(s)	107, 978
Bso31I	GGTCTC	2 cut(s)	495, 878
Bsp143I	GATC	7 cut(s)	42, 121, 154, 159, 751, 786, 960
BspACI	CCGC	1 cut(s)	1307
BspANI	GGCC	2 cut(s)	107, 978
BspCNI	CTCAG	5 cut(s)	79, 91, 450, 541, 570
BspDI	ATCGAT	1 cut(s)	120
BspLI	GGNNCC	5 cut(s)	55, 529, 530, 580, 753
BspPI	GGATC	2 cut(s)	746, 759
BspT107I	GGYRCC	1 cut(s)	578
BspTNI	GGTCTC	2 cut(s)	495, 878
BsrDI	GCAATG	2 cut(s)	464, 925
BsrI	ACTGG	1 cut(s)	716
BssECI	CCNNGG	3 cut(s)	582, 888, 1003
BssMI	GATC	7 cut(s)	42, 121, 154, 159, 751, 786, 960
BssNI	GRCGYC	1 cut(s)	307
BssSI	CACGAG	1 cut(s)	218
Bst2BI	CACGAG	1 cut(s)	218
Bst2UI	CCWGG	1 cut(s)	328
Bst4CI	ACNGT	2 cut(s)	693, 1004
BstACI	GRCGYC	1 cut(s)	307
BstC8I	GCNNGC	2 cut(s)	908, 1053
BstDEI	CTNAG	6 cut(s)	78, 87, 311, 458, 549, 557
BstDSI	CCRYGG	2 cut(s)	582, 1003
BstF5I	GGATG	2 cut(s)	196, 609
BstKTI	GATC	7 cut(s)	45, 124, 157, 162, 754, 789, 963
BstMAI	GTCTC	4 cut(s)	83, 495, 878, 1045
BstMBI	GATC	7 cut(s)	42, 121, 154, 159, 751, 786, 960
BstMCI	CGRYCG	3 cut(s)	45, 124, 1003
BstMWI	GCNNNNNNNGC	3 cut(s)	193, 513, 1241
BstNI	CCWGG	1 cut(s)	328
BstPAI	GACNNNNGTC	1 cut(s)	930
BstSCI	CCNGG	1 cut(s)	326
BstV1I	GCAGC	1 cut(s)	1219
BstV2I	GAAGAC	1 cut(s)	868
BstX2I	RGATCY	1 cut(s)	751
BstYI	RGATCY	1 cut(s)	751
Bsu15I	ATCGAT	1 cut(s)	120
Bsu36I	CCTNAGG	1 cut(s)	549
BsuRI	GGCC	2 cut(s)	107, 978
BsuTUI	ATCGAT	1 cut(s)	120
BtgI	CCRYGG	2 cut(s)	582, 1003
BtsCI	GGATG	2 cut(s)	196, 609
BtsIMutI	CAGTG	2 cut(s)	84, 723
Cac8I	GCNNGC	2 cut(s)	908, 1053
Cfr13I	GGNCC	4 cut(s)	237, 528, 553, 597
ClaI	ATCGAT	1 cut(s)	120
CviAII	CATG	6 cut(s)	109, 302, 625, 699, 928, 1213
DdeI	CTNAG	6 cut(s)	78, 87, 311, 458, 549, 557
DpnI	GATC	7 cut(s)	44, 123, 156, 161, 753, 788, 962
DpnII	GATC	7 cut(s)	42, 121, 154, 159, 751, 786, 960
DraI	TTTAAA	1 cut(s)	399
EaeI	YGGCCR	1 cut(s)	105
Eco147I	AGGCCT	1 cut(s)	978
Eco31I	GGTCTC	2 cut(s)	495, 878
Eco32I	GATATC	3 cut(s)	174, 635, 1294
Eco47I	GGWCC	4 cut(s)	237, 528, 553, 597
Eco57I	CTGAAG	1 cut(s)	342
Eco81I	CCTNAGG	1 cut(s)	549
EcoO109I	RGGNCCY	2 cut(s)	528, 553
EcoRI	GAATTC	1 cut(s)	1250
EcoRII	CCWGG	1 cut(s)	326
EcoRV	GATATC	3 cut(s)	174, 635, 1294
EcoT22I	ATGCAT	1 cut(s)	952
FaeI	CATG	6 cut(s)	112, 305, 628, 702, 931, 1216
FaqI	GGGAC	1 cut(s)	541
FatI	CATG	6 cut(s)	108, 301, 624, 698, 927, 1212
FbaI	TGATCA	1 cut(s)	960
FblI	GTMKAC	1 cut(s)	1218
Fnu4HI	GCNGC	1 cut(s)	1233
FokI	GGATG	2 cut(s)	183, 596
Fsp4HI	GCNGC	1 cut(s)	1233
FspBI	CTAG	3 cut(s)	227, 986, 1245
GluI	GCNGC	1 cut(s)	1233
GsuI	CTGGAG	1 cut(s)	1257
HaeIII	GGCC	2 cut(s)	107, 978
HapII	CCGG	1 cut(s)	404
Hin1I	GRCGYC	1 cut(s)	307
Hin1II	CATG	6 cut(s)	112, 305, 628, 702, 931, 1216
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	7 cut(s)	232, 333, 422, 501, 736, 931, 1316
HpaII	CCGG	1 cut(s)	404
HphI	GGTGA	3 cut(s)	79, 107, 287
Hpy166II	GTNNAC	1 cut(s)	1219
Hpy188III	TCNNGA	7 cut(s)	10, 163, 749, 857, 1105, 1181, 1286
Hpy8I	GTNNAC	1 cut(s)	1219
Hpy99I	CGWCG	1 cut(s)	884
HpyAV	CCTTC	3 cut(s)	44, 58, 521
HpyCH4III	ACNGT	2 cut(s)	693, 1004
HpyCH4IV	ACGT	2 cut(s)	307, 819
HpyCH4V	TGCA	6 cut(s)	217, 464, 545, 764, 950, 1088
HpyF10VI	GCNNNNNNNGC	3 cut(s)	193, 513, 1241
HpyF3I	CTNAG	6 cut(s)	78, 87, 311, 458, 549, 557
HpySE526I	ACGT	2 cut(s)	307, 819
Hsp92I	GRCGYC	1 cut(s)	307
Hsp92II	CATG	6 cut(s)	112, 305, 628, 702, 931, 1216
KflI	GGGWCCC	1 cut(s)	528
Ksp22I	TGATCA	1 cut(s)	960
Kzo9I	GATC	7 cut(s)	42, 121, 154, 159, 751, 786, 960
LmnI	GCTCC	3 cut(s)	722, 829, 1204
Lsp1109I	GCAGC	1 cut(s)	1219
LweI	GCATC	3 cut(s)	205, 1119, 1231
MaeI	CTAG	3 cut(s)	227, 986, 1245
MaeII	ACGT	2 cut(s)	307, 819
MaeIII	GTNAC	2 cut(s)	560, 1118
MalI	GATC	7 cut(s)	44, 123, 156, 161, 753, 788, 962
MboI	GATC	7 cut(s)	42, 121, 154, 159, 751, 786, 960
MboII	GAAGA	5 cut(s)	124, 328, 629, 857, 868
MfeI	CAATTG	1 cut(s)	777
MflI	RGATCY	1 cut(s)	751
MlsI	TGGCCA	1 cut(s)	107
MluCI	AATT	8 cut(s)	30, 278, 433, 441, 777, 814, 1185, 1250
MluNI	TGGCCA	1 cut(s)	107
MlyI	GAGTC	3 cut(s)	241, 510, 940
MmeI	TCCRAC	3 cut(s)	215, 364, 1226
Mox20I	TGGCCA	1 cut(s)	107
Mph1103I	ATGCAT	1 cut(s)	952
MscI	TGGCCA	1 cut(s)	107
MseI	TTAA	3 cut(s)	398, 437, 945
MslI	CAYNNNNRTG	1 cut(s)	201
Msp20I	TGGCCA	1 cut(s)	107
MspI	CCGG	1 cut(s)	404
MspR9I	CCNGG	1 cut(s)	328
MunI	CAATTG	1 cut(s)	777
Mva1269I	GAATGC	1 cut(s)	744
MvaI	CCWGG	1 cut(s)	328
MwoI	GCNNNNNNNGC	3 cut(s)	193, 513, 1241
NdeII	GATC	7 cut(s)	42, 121, 154, 159, 751, 786, 960
NlaIII	CATG	6 cut(s)	112, 305, 628, 702, 931, 1216
NlaIV	GGNNCC	5 cut(s)	55, 529, 530, 580, 753
NmuCI	GTSAC	1 cut(s)	560
NsiI	ATGCAT	1 cut(s)	952
PceI	AGGCCT	1 cut(s)	978
PcsI	WCGNNNNNNNCGW	1 cut(s)	885
PctI	GAATGC	1 cut(s)	744
PfeI	GAWTC	4 cut(s)	333, 422, 736, 1316
PkrI	GCNGC	1 cut(s)	1234
Ple19I	CGATCG	2 cut(s)	45, 124
PleI	GAGTC	3 cut(s)	240, 509, 939
PpsI	GAGTC	3 cut(s)	240, 509, 939
PpuMI	RGGWCCY	2 cut(s)	528, 553
PshAI	GACNNNNGTC	1 cut(s)	930
Psp5II	RGGWCCY	2 cut(s)	528, 553
Psp6I	CCWGG	1 cut(s)	326
PspGI	CCWGG	1 cut(s)	326
PspN4I	GGNNCC	5 cut(s)	55, 529, 530, 580, 753
PspPI	GGNCC	4 cut(s)	237, 528, 553, 597
PspPPI	RGGWCCY	2 cut(s)	528, 553
PsuI	RGATCY	1 cut(s)	751
PvuI	CGATCG	2 cut(s)	45, 124
RseI	CAYNNNNRTG	1 cut(s)	201
SaqAI	TTAA	3 cut(s)	398, 437, 945
SatI	GCNGC	1 cut(s)	1233
Sau3AI	GATC	7 cut(s)	42, 121, 154, 159, 751, 786, 960
Sau96I	GGNCC	4 cut(s)	237, 528, 553, 597
SchI	GAGTC	3 cut(s)	241, 510, 940
ScrFI	CCNGG	1 cut(s)	328
SfaNI	GCATC	3 cut(s)	205, 1119, 1231
SinI	GGWCC	4 cut(s)	237, 528, 553, 597
SmiMI	CAYNNNNRTG	1 cut(s)	201
SmlI	CTYRAG	3 cut(s)	972, 1256, 1286
SmoI	CTYRAG	3 cut(s)	972, 1256, 1286
Sse9I	AATT	8 cut(s)	30, 278, 433, 441, 777, 814, 1185, 1250
SseBI	AGGCCT	1 cut(s)	978
SsiI	CCGC	1 cut(s)	1307
SspI	AATATT	2 cut(s)	255, 834
SspMI	CTAG	3 cut(s)	227, 986, 1245
StuI	AGGCCT	1 cut(s)	978
StyD4I	CCNGG	1 cut(s)	326
TaaI	ACNGT	2 cut(s)	693, 1004
TaiI	ACGT	2 cut(s)	310, 822
TaqI	TCGA	6 cut(s)	120, 153, 858, 879, 999, 1182
TaqII	GACCGA	1 cut(s)	902
TasI	AATT	8 cut(s)	30, 278, 433, 441, 777, 814, 1185, 1250
TfiI	GAWTC	4 cut(s)	333, 422, 736, 1316
Tru1I	TTAA	3 cut(s)	398, 437, 945
Tru9I	TTAA	3 cut(s)	398, 437, 945
TscAI	CASTG	2 cut(s)	91, 723
TseFI	GTSAC	1 cut(s)	560
TseI	GCWGC	1 cut(s)	1232
Tsp45I	GTSAC	1 cut(s)	560
TspDTI	ATGAA	8 cut(s)	42, 125, 197, 253, 287, 728, 858, 1034
TspRI	CASTG	2 cut(s)	91, 723
VpaK11BI	GGWCC	4 cut(s)	237, 528, 553, 597
XapI	RAATTY	4 cut(s)	433, 441, 1185, 1250
XmiI	GTMKAC	1 cut(s)	1218
XspI	CTAG	3 cut(s)	227, 986, 1245
ZraI	GACGTC	1 cut(s)	308
Zsp2I	ATGCAT	1 cut(s)	952

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.