MD09G1023500.v1.1

CRS1_YhbY

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Reverse (-)
1409185 .. 1412338
3154 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1023500.v1.1.491

Sequence Viewer

Length: 2019 bp
ATGTTCGCTGCGAGGAAGCTCAATAGGCATTGCTTCAAGTCCGTCTCTTCTCTCCTCCAATTCAATCCCCCCAAAAATGCCTTGTTGTTAAGAGATGTCTCGGCGAAGGTTTTATCAAGCAATGCAGTTCAGCCAAGTAAACCGAGTGAAGATTGTTACTCTTCTTCATCTAGACCAGCCAATCCCTTCGATGGGTGGTCTAGGTCAATGTCGACATCTAGAGGGAGTAGTAGCATGAGGAGCAAAGTTGCTAAGCGGATGCAAAAGGAGTCTGGTAAGACTCTAAGAGAGGTTCGCAGAGCGAAAAAGCTTCAAAAGAAGCTGATGACCGAAAATGAGAGGCTCATTTACAACCTCAAAAGAGCCAAGAGGAAAGTGGCATTGCTACTACAAAAGCTGAAAAAATACGAGCTTCCAGATCTGCCAGCACCCCGTCATGATCCTGAGCTATTAACCCTCGAGCAGCTTCAGGCATTGAAAAAGATTGGCTTCAAAAATAAAAATTATGTTCCCGTCGGTGTTCGTGGGGTCTTTGGAGGAGTTGTCCAGAATATGCATCTACACTGGAAGTTTCACGAGACTGTACAAGTTTGTTGTGATAACTTCCCCAAAGAAAAGATTAAGGAAATGGCGACTATGCTTGCGAGACTGAGTGGTGGTATAGTGGTAAACATACATAATACTAAAACAATCATCATGTTTCGCGGAAGAAATTACCGGCAGCCCAAAAATTTAATACCTTTCAATACCCTTACAAAAAGGAAGGCATTATTCAAGGCAAGATTTGAACAAGCCCTCGAATCTCAGAAGCTAAACATAAAGAAGATAGAACAGCAGCTCCGCCGAAGTGGTGTTAATCCTGAGGATCCAGTTGCTATTGCGAGCATCCAGAGAGTAGCTTCCTCATTCTTTAATGCAATTGATCAGAAGGACGGAAGTCCTTATGTCTTCCAGGGAGACAAACCATCAGTAGCAGAGCATGATAATAAATTGAAACATCCAGAGCCTCCTGATGAGGAAGAGGAGGAGGAGTTGGACAAATTCATAGCTGAAATTGAGGATGCAGCAGAACGAGAGTGGGCTGCGGAGGAAGCAGCTGAGAAAGAGGAGTTCACTAGAATGAGGTATTGGAACAGAGAAGAGTATGGTGGGAGATACAGGAGATCTGAAGAACCTGAAAATGACGATTCTGATGATGAGATCCCAAGGCCAAGGGACTGGAGGCATAATGGCAAGCAGAGGCCTAATGGTGATTACGAAGATGACGAAGAGGAATGGCATTCAAATAATGCTGTGGGCGCTAGTGTTCTCGACAGTGATGCTGATGATTCTGATGGAACGCCTGAGAAGTTCAAGATATCTCCAAGAGACAGGGGGAGGCAGGATAGGATTGGAAGGGCCAAGAATGATGAACGCTTTTATAGAAATTCCGAAGCTAACAATAGAAAAGTTAATAATAGAAAGATTATGGTGGACGATGGCACTGAATCAGAAAATGTGCTGAGCGATCTTGATACTGCAATGTGGAAATCCGATTCTGAGGAAGAACATGACTCAACAGCATCAAGAGCTGCGAACTATGACTTCCAAAGTAGCAGTGATGAAGAAGAGGACTTGATGTACCTGAAGGGAGGAAAGGAGCGGGTAAATGATTCCGAGAGTAACACTGATTATTCCAACAAAGCTCGTAGCAAGTTTGAGGCATCAAGAGTTGCAGAGGGGAGAGATGATAGGATTGGCCGGGGCAACAGTGAATATTTCAAAAGAAATGCTGGTGTTAGCCCAAGAAGAAAGCCAGTTGAGGAGGATGTCAAGTCCGAGGATATCTCCGGTGACTCTGAAAACGAAATATGGGAATTAAACGCTGCCAGTGACTCGGGAGCATCGAAGGCAGGGAGATTCGATTACAACAGCAGCGACGAAGAGGATTATCAAGTTAGGAGGGAAGAGAAGAAAGGAAATGGTAATAAAAGCACAAGAACAAGGAAAGCCTTGGATGAGGATTGGGACAGTGATTAG

Protein Analysis

673

Amino Acids

77.18

Weight (kDa)

6.51

Isoelectric Point (pI)

57.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRS1_YhbY PF01985 151 - 235 7.4e-15 CRS1 / YhbY (CRM) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011191)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1642
AccI GTMKAC 1 cut(s) 212
AccII CGCG 1 cut(s) 705
AciI CCGC 5 cut(s) 256, 705, 841, 1085, 1642
AclWI GGATC 4 cut(s) 434, 860, 873, 1195
AcoI YGGCCR 1 cut(s) 1738
AcsI RAATTY 3 cut(s) 730, 1040, 1426
AcuI CTGAAG 3 cut(s) 452, 1188, 1646
AfaI GTAC 2 cut(s) 585, 1622
AfiI CCNNNNNNNGG 2 cut(s) 191, 192
AjnI CCWGG 1 cut(s) 951
AjuI GAANNNNNNNTTGG 2 cut(s) 1111, 1143
AloI GAACNNNNNNTCC 2 cut(s) 822, 854
Alw26I GTCTC 6 cut(s) 49, 103, 572, 640, 951, 1362
AlwI GGATC 4 cut(s) 434, 860, 873, 1195
Ama87I CYCGRG 2 cut(s) 458, 1876
AoxI GGCC 4 cut(s) 1208, 1241, 1398, 1738
ApoI RAATTY 3 cut(s) 730, 1040, 1426
AspLEI GCGC 1 cut(s) 1301
AspS9I GGNCC 1 cut(s) 1398
AsuC2I CCSGG 1 cut(s) 1742
AsuHPI GGTGA 2 cut(s) 1262, 1844
AvaI CYCGRG 2 cut(s) 458, 1876
AxyI CCTNAGG 1 cut(s) 861
BamHI GGATCC 1 cut(s) 865
BauI CACGAG 1 cut(s) 575
BbsI GAAGAC 1 cut(s) 940
BbvI GCAGC 9 cut(s) 475, 733, 847, 1069, 1076, 1106, 1558, 1852, 1926
BccI CCATC 4 cut(s) 185, 973, 1328, 1472
BcgI CGANNNNNNTGC 2 cut(s) 1301, 1335
BciT130I CCWGG 1 cut(s) 953
BclI TGATCA 1 cut(s) 922
BcnI CCSGG 1 cut(s) 1742
BcoDI GTCTC 6 cut(s) 49, 103, 572, 640, 951, 1362
BfaI CTAG 5 cut(s) 171, 201, 219, 1116, 1302
BfoI RGCGCY 1 cut(s) 1302
BglII AGATCT 2 cut(s) 418, 1163
BlpI GCTNAGC 2 cut(s) 252, 1502
Bme1390I CCNGG 2 cut(s) 953, 1742
BmeT110I CYCGRG 2 cut(s) 458, 1876
BmgT120I GGNCC 1 cut(s) 1398
BmiI GGNNCC 1 cut(s) 867
BmrFI CCNGG 2 cut(s) 953, 1742
BmsI GCATC 8 cut(s) 249, 565, 894, 1051, 1309, 1571, 1712, 1892
BoxI GACNNNNGTC 1 cut(s) 936
BpiI GAAGAC 1 cut(s) 940
BplI GAGNNNNNCTC 2 cut(s) 1811, 1843
BpmI CTGGAG 1 cut(s) 1240
Bpu10I CCTNAGC 1 cut(s) 444
Bpu1102I GCTNAGC 2 cut(s) 252, 1502
BpuMI CCSGG 1 cut(s) 1742
BsaJI CCNNGG 6 cut(s) 952, 1205, 1211, 1741, 1818, 1992
BsaWI WCCGGW 1 cut(s) 1829
BsaXI ACNNNNNCTCC 6 cut(s) 528, 558, 822, 852, 1016, 1046
Bsc4I CCNNNNNNNGG 2 cut(s) 191, 192
Bse118I RCCGGY 1 cut(s) 717
Bse1I ACTGG 5 cut(s) 569, 869, 1223, 1796, 1869
Bse21I CCTNAGG 1 cut(s) 861
Bse3DI GCAATG 4 cut(s) 28, 127, 380, 1527
BseBI CCWGG 1 cut(s) 953
BseDI CCNNGG 6 cut(s) 952, 1205, 1211, 1741, 1818, 1992
BseGI GGATG 6 cut(s) 264, 885, 997, 1066, 1813, 2002
BseLI CCNNNNNNNGG 2 cut(s) 191, 192
BseMI GCAATG 4 cut(s) 28, 127, 380, 1527
BseMII CTCAG 8 cut(s) 435, 641, 818, 852, 1089, 1335, 1493, 1530
BseNI ACTGG 5 cut(s) 569, 869, 1223, 1796, 1869
BseRI GAGGAG 8 cut(s) 44, 253, 552, 1037, 1040, 1043, 1121, 1817
BseXI GCAGC 9 cut(s) 475, 733, 847, 1069, 1076, 1106, 1558, 1852, 1926
Bsh1236I CGCG 1 cut(s) 705
BshFI GGCC 4 cut(s) 1210, 1243, 1400, 1740
BsiHKCI CYCGRG 2 cut(s) 458, 1876
BsiSI CCGG 3 cut(s) 718, 1741, 1830
BslFI GGGAC 1 cut(s) 1229
BslI CCNNNNNNNGG 2 cut(s) 191, 192
BsmAI GTCTC 6 cut(s) 49, 103, 572, 640, 951, 1362
BsmBI CGTCTC 1 cut(s) 49
BsmFI GGGAC 1 cut(s) 1229
BsmI GAATGC 1 cut(s) 1279
BsnI GGCC 4 cut(s) 1210, 1243, 1400, 1740
BsoBI CYCGRG 2 cut(s) 458, 1876
Bsp1407I TGTACA 1 cut(s) 583
Bsp143I GATC 7 cut(s) 418, 439, 865, 922, 1163, 1200, 1507
Bsp1720I GCTNAGC 2 cut(s) 252, 1502
BspACI CCGC 5 cut(s) 256, 705, 841, 1085, 1642
BspANI GGCC 4 cut(s) 1210, 1243, 1400, 1740
BspCNI CTCAG 8 cut(s) 436, 642, 817, 853, 1090, 1336, 1494, 1531
BspFNI CGCG 1 cut(s) 705
BspHI TCATGA 1 cut(s) 436
BspLI GGNNCC 1 cut(s) 867
BspPI GGATC 4 cut(s) 434, 860, 873, 1195
BsrBI CCGCTC 1 cut(s) 1642
BsrDI GCAATG 4 cut(s) 28, 127, 380, 1527
BsrFI RCCGGY 1 cut(s) 717
BsrGI TGTACA 1 cut(s) 583
BsrI ACTGG 5 cut(s) 569, 869, 1223, 1796, 1869
BssAI RCCGGY 1 cut(s) 717
BssECI CCNNGG 6 cut(s) 952, 1205, 1211, 1741, 1818, 1992
BssMI GATC 7 cut(s) 418, 439, 865, 922, 1163, 1200, 1507
BssSI CACGAG 1 cut(s) 575
BssT1I CCWWGG 3 cut(s) 1205, 1211, 1992
Bst2BI CACGAG 1 cut(s) 575
Bst2UI CCWGG 1 cut(s) 953
Bst4CI ACNGT 4 cut(s) 583, 1316, 1751, 2012
Bst6I CTCTTC 8 cut(s) 52, 166, 1014, 1134, 1263, 1602, 1917, 1941
BstAUI TGTACA 1 cut(s) 583
BstC8I GCNNGC 4 cut(s) 426, 642, 883, 1235
BstF5I GGATG 6 cut(s) 264, 885, 997, 1066, 1813, 2002
BstFNI CGCG 1 cut(s) 705
BstH2I RGCGCY 1 cut(s) 1302
BstHHI GCGC 1 cut(s) 1301
BstKTI GATC 7 cut(s) 421, 442, 868, 925, 1166, 1203, 1510
BstMAI GTCTC 6 cut(s) 49, 103, 572, 640, 951, 1362
BstMBI GATC 7 cut(s) 418, 439, 865, 922, 1163, 1200, 1507
BstMWI GCNNNNNNNGC 6 cut(s) 25, 240, 1091, 1298, 1568, 1889
BstNI CCWGG 1 cut(s) 953
BstPAI GACNNNNGTC 1 cut(s) 936
BstSCI CCNGG 2 cut(s) 951, 1740
BstUI CGCG 1 cut(s) 705
BstV1I GCAGC 9 cut(s) 475, 733, 847, 1069, 1076, 1106, 1558, 1852, 1926
BstV2I GAAGAC 1 cut(s) 940
BstX2I RGATCY 4 cut(s) 418, 865, 1163, 1200
BstXI CCANNNNNNTGG 1 cut(s) 1218
BstYI RGATCY 4 cut(s) 418, 865, 1163, 1200
Bsu36I CCTNAGG 1 cut(s) 861
BsuRI GGCC 4 cut(s) 1210, 1243, 1400, 1740
BtsCI GGATG 6 cut(s) 264, 885, 997, 1066, 1813, 2002
BtsI GCAGTG 1 cut(s) 1603
BtsIMutI CAGTG 8 cut(s) 562, 1321, 1482, 1603, 1665, 1756, 1876, 2017
Cac8I GCNNGC 4 cut(s) 426, 642, 883, 1235
CciI TCATGA 1 cut(s) 436
CfoI GCGC 1 cut(s) 1301
Cfr10I RCCGGY 1 cut(s) 717
Cfr13I GGNCC 1 cut(s) 1398
Csp6I GTAC 2 cut(s) 584, 1621
CviAII CATG 5 cut(s) 235, 437, 697, 980, 1550
CviQI GTAC 2 cut(s) 584, 1621
DpnI GATC 7 cut(s) 420, 441, 867, 924, 1165, 1202, 1509
DpnII GATC 7 cut(s) 418, 439, 865, 922, 1163, 1200, 1507
EaeI YGGCCR 1 cut(s) 1738
Eam1104I CTCTTC 8 cut(s) 52, 166, 1014, 1134, 1263, 1602, 1917, 1941
EarI CTCTTC 8 cut(s) 52, 166, 1014, 1134, 1263, 1602, 1917, 1941
EciI GGCGGA 1 cut(s) 830
Eco130I CCWWGG 3 cut(s) 1205, 1211, 1992
Eco147I AGGCCT 1 cut(s) 1243
Eco32I GATATC 2 cut(s) 1359, 1825
Eco57I CTGAAG 3 cut(s) 452, 1188, 1646
Eco81I CCTNAGG 1 cut(s) 861
Eco88I CYCGRG 2 cut(s) 458, 1876
EcoRII CCWGG 1 cut(s) 951
EcoRV GATATC 2 cut(s) 1359, 1825
EcoT14I CCWWGG 3 cut(s) 1205, 1211, 1992
EcoT22I ATGCAT 1 cut(s) 558
ErhI CCWWGG 3 cut(s) 1205, 1211, 1992
Esp3I CGTCTC 1 cut(s) 49
FaeI CATG 5 cut(s) 238, 440, 700, 983, 1553
FalI AAGNNNNNCTT 2 cut(s) 473, 505
FaqI GGGAC 1 cut(s) 1229
FatI CATG 5 cut(s) 234, 436, 696, 979, 1549
FauI CCCGC 1 cut(s) 1635
FbaI TGATCA 1 cut(s) 922
FblI GTMKAC 1 cut(s) 212
FokI GGATG 6 cut(s) 271, 872, 984, 1073, 1820, 2009
FspBI CTAG 5 cut(s) 171, 201, 219, 1116, 1302
GlaI GCGC 1 cut(s) 1300
GsuI CTGGAG 1 cut(s) 1240
HaeII RGCGCY 1 cut(s) 1302
HaeIII GGCC 4 cut(s) 1210, 1243, 1400, 1740
HapII CCGG 3 cut(s) 718, 1741, 1830
HhaI GCGC 1 cut(s) 1301
Hin1II CATG 5 cut(s) 238, 440, 700, 983, 1553
Hin6I GCGC 1 cut(s) 1299
HinP1I GCGC 1 cut(s) 1299
HincII GTYRAC 1 cut(s) 213
HindII GTYRAC 1 cut(s) 213
HindIII AAGCTT 1 cut(s) 308
HpaII CCGG 3 cut(s) 718, 1741, 1830
HphI GGTGA 2 cut(s) 1262, 1844
Hpy166II GTNNAC 5 cut(s) 140, 213, 670, 1113, 1474
Hpy8I GTNNAC 5 cut(s) 140, 213, 670, 1113, 1474
Hpy99I CGWCG 2 cut(s) 518, 1922
HpyAV CCTTC 7 cut(s) 100, 196, 757, 922, 1389, 1621, 1882
HpyCH4III ACNGT 4 cut(s) 583, 1316, 1751, 2012
HpyCH4V TGCA 7 cut(s) 125, 262, 556, 917, 1064, 1520, 1715
HpyF10VI GCNNNNNNNGC 6 cut(s) 25, 240, 1091, 1298, 1568, 1889
Hsp92II CATG 5 cut(s) 238, 440, 700, 983, 1553
HspAI GCGC 1 cut(s) 1299
Ksp22I TGATCA 1 cut(s) 922
Kzo9I GATC 7 cut(s) 418, 439, 865, 922, 1163, 1200, 1507
LmnI GCTCC 4 cut(s) 240, 843, 1639, 1880
Lsp1109I GCAGC 9 cut(s) 475, 733, 847, 1069, 1076, 1106, 1558, 1852, 1926
LweI GCATC 8 cut(s) 249, 565, 894, 1051, 1309, 1571, 1712, 1892
MaeI CTAG 5 cut(s) 171, 201, 219, 1116, 1302
MaeIII GTNAC 4 cut(s) 155, 1661, 1832, 1871
MalI GATC 7 cut(s) 420, 441, 867, 924, 1165, 1202, 1509
MbiI CCGCTC 1 cut(s) 1642
MboI GATC 7 cut(s) 418, 439, 865, 922, 1163, 1200, 1507
MfeI CAATTG 1 cut(s) 918
MflI RGATCY 4 cut(s) 418, 865, 1163, 1200
MlyI GAGTC 5 cut(s) 274, 278, 1547, 1829, 1868
MmeI TCCRAC 2 cut(s) 1014, 1701
Mph1103I ATGCAT 1 cut(s) 558
MseI TTAA 8 cut(s) 89, 452, 621, 734, 855, 912, 1452, 1859
MslI CAYNNNNRTG 1 cut(s) 1118
MspA1I CMGCKG 1 cut(s) 1097
MspI CCGG 3 cut(s) 718, 1741, 1830
MspR9I CCNGG 2 cut(s) 953, 1742
MunI CAATTG 1 cut(s) 918
Mva1269I GAATGC 1 cut(s) 1279
MvaI CCWGG 1 cut(s) 953
MvnI CGCG 1 cut(s) 705
MwoI GCNNNNNNNGC 6 cut(s) 25, 240, 1091, 1298, 1568, 1889
NciI CCSGG 1 cut(s) 1742
NdeII GATC 7 cut(s) 418, 439, 865, 922, 1163, 1200, 1507
NlaIII CATG 5 cut(s) 238, 440, 700, 983, 1553
NlaIV GGNNCC 1 cut(s) 867
NmeAIII GCCGAG 1 cut(s) 80
NmuCI GTSAC 2 cut(s) 1832, 1871
NsiI ATGCAT 1 cut(s) 558
PaeR7I CTCGAG 1 cut(s) 458
PagI TCATGA 1 cut(s) 436
PceI AGGCCT 1 cut(s) 1243
PcsI WCGNNNNNNNCGW 2 cut(s) 1263, 1883
PctI GAATGC 1 cut(s) 1279
PfeI GAWTC 7 cut(s) 800, 1187, 1328, 1487, 1535, 1652, 1899
PleI GAGTC 5 cut(s) 274, 277, 1547, 1829, 1868
PpsI GAGTC 5 cut(s) 274, 277, 1547, 1829, 1868
PshAI GACNNNNGTC 1 cut(s) 936
Psp6I CCWGG 1 cut(s) 951
PspGI CCWGG 1 cut(s) 951
PspN4I GGNNCC 1 cut(s) 867
PspPI GGNCC 1 cut(s) 1398
PspXI VCTCGAGB 1 cut(s) 458
PsuI RGATCY 4 cut(s) 418, 865, 1163, 1200
PvuII CAGCTG 1 cut(s) 1097
RsaI GTAC 2 cut(s) 585, 1622
RsaNI GTAC 2 cut(s) 584, 1621
RseI CAYNNNNRTG 1 cut(s) 1118
SalI GTCGAC 1 cut(s) 211
SaqAI TTAA 8 cut(s) 89, 452, 621, 734, 855, 912, 1452, 1859
Sau3AI GATC 7 cut(s) 418, 439, 865, 922, 1163, 1200, 1507
Sau96I GGNCC 1 cut(s) 1398
SchI GAGTC 5 cut(s) 274, 278, 1547, 1829, 1868
ScrFI CCNGG 2 cut(s) 953, 1742
SfaNI GCATC 8 cut(s) 249, 565, 894, 1051, 1309, 1571, 1712, 1892
Sfr274I CTCGAG 1 cut(s) 458
SlaI CTCGAG 1 cut(s) 458
SmiMI CAYNNNNRTG 1 cut(s) 1118
SmlI CTYRAG 1 cut(s) 458
SmoI CTYRAG 1 cut(s) 458
SseBI AGGCCT 1 cut(s) 1243
SsiI CCGC 5 cut(s) 256, 705, 841, 1085, 1642
SspI AATATT 1 cut(s) 1757
SspMI CTAG 5 cut(s) 171, 201, 219, 1116, 1302
StuI AGGCCT 1 cut(s) 1243
StyD4I CCNGG 2 cut(s) 951, 1740
StyI CCWWGG 3 cut(s) 1205, 1211, 1992
TaaI ACNGT 4 cut(s) 583, 1316, 1751, 2012
TaqI TCGA 7 cut(s) 189, 212, 459, 798, 1311, 1886, 1902
TaqII GACCGA 1 cut(s) 344
TatI WGTACW 1 cut(s) 583
TfiI GAWTC 7 cut(s) 800, 1187, 1328, 1487, 1535, 1652, 1899
Tru1I TTAA 8 cut(s) 89, 452, 621, 734, 855, 912, 1452, 1859
Tru9I TTAA 8 cut(s) 89, 452, 621, 734, 855, 912, 1452, 1859
TscAI CASTG 8 cut(s) 569, 1321, 1489, 1603, 1672, 1756, 1876, 2017
TseFI GTSAC 2 cut(s) 1832, 1871
Tsp45I GTSAC 2 cut(s) 1832, 1871
TspDTI ATGAA 4 cut(s) 156, 1033, 1425, 1617
TspGWI ACGGA 2 cut(s) 31, 948
TspRI CASTG 8 cut(s) 569, 1321, 1489, 1603, 1672, 1756, 1876, 2017
XapI RAATTY 3 cut(s) 730, 1040, 1426
XbaI TCTAGA 2 cut(s) 170, 218
XcmI CCANNNNNNNNNTGG 1 cut(s) 373
XhoI CTCGAG 1 cut(s) 458
XmiI GTMKAC 1 cut(s) 212
XspI CTAG 5 cut(s) 171, 201, 219, 1116, 1302
Zsp2I ATGCAT 1 cut(s) 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.