Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0011191

Physical Location & Seq

Genomic Coordinates Reverse (-)

1173967 .. 1175076

Gene Structure 1110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g01960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGAGATCGATCAGAAGGACGGAAGTCCTTATGTCTTCCAAGGAGACAAACCGTCAGTAGCAGAGCCTGATAATAAATTGAAACATCCAGAGCCTCCTGATGAGGAAGAGGAGGAGGAGTTGGACAAATTCATAGCTGAAATTGAGGATGCAGCAGAACGAGAGTGGGCTGCGGAGGAAGCAGCTGAGAAAGAGGAGTTCACCAGAATGAGGTATTGGAACAGAGAAGAGTATGGTGGGAGATACAGGAGATCTGAAGAACCTGAAAATGACGATTCTGATGATGAGATCCCAAGGGCAAGGGACTGGAGGCATACACATGGCAAGCAGAGGCCAAATGGTGATTCCAAAGATGATGATGAGGAATGGCGTTCTAATAATGTTATGGGCGCTAGTGTTCTTGACAGTGATGCTGATGATTCTGATGGAATGCCTGAGAACTTCAAGATATCTCCAAGAGACAGGGGGAGGCAGGATGGGATTGGAAGGGCCAAGAATGATGGACGCTTGTACAGAAATTCCGAAGCTAACAATAGAAAAGCTAATAATGGAAAGATTATGGTGGACGATGGCACTGAATCAGAAAATGTGCTGAGCGATCTCGATACTGCAATGTGGAAATCCGATTCTGAGGAAGAACATGACTCAACAGCATCCAGAGCTGCGAACTATGATTTCCGAAGTAGCAGTGATGAAGAAGAGGACTTAATGTACGTGAAAGGAGGAAAGGAGCGGGTAAATGATTCCGAAAGTAACACTGATTATTCCAACAAAGCTCGTGGCAAGTTTGAGGCATCAAGAGTTGCAAAGGGGAAACATGATAGGATTGGCAGGGGCAACAGTGAATATTTCAAAAGAAATGCTGATGTTAGCACAAGAAGAAAGCCAGTTGAGGAGGATGTCAAGTCCGAGGATATCTCCGGTGATTCTGAAAACGAAATATGGGAATTAAACGCTGCCAGCGACTCAGGAGCATCGAAGGCAGGGAGATTCGATTACAACAGCAGCGACGAAGAGGATTATCAAGTTAGGAGGGAAGAGAAGAACGGAAATGGTAATAAAAGCACAAGAACAAGAAAAGACTTGGATGAGGATTGGGACAGTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006974 GO:0008150 GO:0009314 GO:0009628 GO:0009889 GO:0009987 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010564 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031570 GO:0033043 GO:0033554 GO:0040020 GO:0043565 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051445 GO:0051716 GO:0051726 GO:0051783 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRS1_YhbY

Protein Analysis

370

Amino Acids

42.3

Weight (kDa)

4.54

Isoelectric Point (pI)

54.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27550 AT3G27550 AT3G27550
fragaria_vesca	FvH4_6g51690
malus_domestica	MD09G1023500.v1.1 MD17G1023000.v1.1
prunus_persica	Prupe.3G293300_v2.0.a1
pyrus_communis	pycom111g01960 pycom17g01970
rosa_chinensis	RchiOBHm_Chr2g0173221
rosa_laevigata	RLG00000022171
rosa_multiflora	Rmu_sc0000860.1_g000003 Rmu_sc0039142.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079110
rosa_rugosa	Rorug02G0566600
rosa_samantha	Rh2AG646500 Rh2BG657200 Rh2CG622400 Rh2DG670800
rosa_wichuraiana	Rw2G053100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	733
AciI	CCGC	2 cut(s)	173, 733
AclWI	GGATC	1 cut(s)	283
AcsI	RAATTY	2 cut(s)	128, 517
AcuI	CTGAAG	1 cut(s)	276
AfaI	GTAC	2 cut(s)	512, 713
AfiI	CCNNNNNNNGG	1 cut(s)	210
AgsI	TTSAA	3 cut(s)	82, 445, 853
AhdI	GACNNNNNGTC	1 cut(s)	52
AjuI	GAANNNNNNNTTGG	4 cut(s)	199, 231, 328, 360
AluBI	AGCT	6 cut(s)	137, 185, 527, 542, 662, 776
AluI	AGCT	6 cut(s)	137, 185, 527, 542, 662, 776
Alw26I	GTCTC	2 cut(s)	39, 453
AlwI	GGATC	1 cut(s)	283
AlwNI	CAGNNNCTG	1 cut(s)	68
AoxI	GGCC	2 cut(s)	332, 489
ApeKI	GCWGC	6 cut(s)	152, 170, 182, 662, 956, 1005
ApoI	RAATTY	2 cut(s)	128, 517
AspLEI	GCGC	1 cut(s)	392
AspS9I	GGNCC	1 cut(s)	489
AsuHPI	GGTGA	3 cut(s)	193, 353, 935
BauI	CACGAG	1 cut(s)	777
BbsI	GAAGAC	1 cut(s)	28
BbvI	GCAGC	6 cut(s)	157, 164, 194, 649, 943, 1017
BccI	CCATC	4 cut(s)	419, 470, 494, 563
BcoDI	GTCTC	2 cut(s)	39, 453
BfaI	CTAG	1 cut(s)	393
BfoI	RGCGCY	1 cut(s)	393
BglII	AGATCT	1 cut(s)	251
BisI	GCNGC	6 cut(s)	153, 171, 183, 663, 957, 1006
BlpI	GCTNAGC	1 cut(s)	593
BlsI	GCNGC	6 cut(s)	154, 172, 184, 664, 958, 1007
BmeRI	GACNNNNNGTC	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	489
BmsI	GCATC	5 cut(s)	139, 400, 662, 803, 983
BoxI	GACNNNNGTC	1 cut(s)	24
BpiI	GAAGAC	1 cut(s)	28
BplI	GAGNNNNNCTC	2 cut(s)	902, 934
BpmI	CTGGAG	1 cut(s)	328
Bpu1102I	GCTNAGC	1 cut(s)	593
Bsa29I	ATCGAT	1 cut(s)	9
BsaAI	YACGTR	1 cut(s)	715
BsaJI	CCNNGG	3 cut(s)	40, 293, 909
BsaWI	WCCGGW	1 cut(s)	920
BsaXI	ACNNNNNCTCC	2 cut(s)	104, 134
Bsc4I	CCNNNNNNNGG	1 cut(s)	210
Bse1I	ACTGG	2 cut(s)	311, 887
Bse3DI	GCAATG	1 cut(s)	618
BseCI	ATCGAT	1 cut(s)	9
BseDI	CCNNGG	3 cut(s)	40, 293, 909
BseGI	GGATG	6 cut(s)	85, 154, 481, 653, 904, 1093
BseLI	CCNNNNNNNGG	1 cut(s)	210
BseMI	GCAATG	1 cut(s)	618
BseMII	CTCAG	5 cut(s)	177, 426, 584, 621, 981
BseNI	ACTGG	2 cut(s)	311, 887
BseRI	GAGGAG	5 cut(s)	125, 128, 131, 209, 908
BseXI	GCAGC	6 cut(s)	157, 164, 194, 649, 943, 1017
BshFI	GGCC	2 cut(s)	334, 491
BshVI	ATCGAT	1 cut(s)	9
BsiSI	CCGG	1 cut(s)	921
BslFI	GGGAC	1 cut(s)	317
BslI	CCNNNNNNNGG	1 cut(s)	210
BsmAI	GTCTC	2 cut(s)	39, 453
BsmFI	GGGAC	1 cut(s)	317
BsmI	GAATGC	1 cut(s)	435
BsnI	GGCC	2 cut(s)	334, 491
Bsp1407I	TGTACA	1 cut(s)	510
Bsp143I	GATC	5 cut(s)	6, 10, 251, 288, 598
Bsp1720I	GCTNAGC	1 cut(s)	593
BspACI	CCGC	2 cut(s)	173, 733
BspANI	GGCC	2 cut(s)	334, 491
BspCNI	CTCAG	5 cut(s)	178, 427, 585, 622, 980
BspDI	ATCGAT	1 cut(s)	9
BspPI	GGATC	1 cut(s)	283
BsrBI	CCGCTC	1 cut(s)	733
BsrDI	GCAATG	1 cut(s)	618
BsrGI	TGTACA	1 cut(s)	510
BsrI	ACTGG	2 cut(s)	311, 887
BssECI	CCNNGG	3 cut(s)	40, 293, 909
BssMI	GATC	5 cut(s)	6, 10, 251, 288, 598
BssSI	CACGAG	1 cut(s)	777
BssT1I	CCWWGG	2 cut(s)	40, 293
Bst2BI	CACGAG	1 cut(s)	777
Bst4CI	ACNGT	4 cut(s)	54, 407, 842, 1103
Bst6I	CTCTTC	5 cut(s)	102, 222, 693, 1008, 1032
BstAUI	TGTACA	1 cut(s)	510
BstBAI	YACGTR	1 cut(s)	715
BstC8I	GCNNGC	2 cut(s)	326, 961
BstDEI	CTNAG	5 cut(s)	186, 435, 593, 630, 967
BstF5I	GGATG	6 cut(s)	85, 154, 481, 653, 904, 1093
BstH2I	RGCGCY	1 cut(s)	393
BstHHI	GCGC	1 cut(s)	392
BstKTI	GATC	5 cut(s)	9, 13, 254, 291, 601
BstMAI	GTCTC	2 cut(s)	39, 453
BstMBI	GATC	5 cut(s)	6, 10, 251, 288, 598
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 659, 980
BstPAI	GACNNNNGTC	1 cut(s)	24
BstV1I	GCAGC	6 cut(s)	157, 164, 194, 649, 943, 1017
BstV2I	GAAGAC	1 cut(s)	28
BstX2I	RGATCY	2 cut(s)	251, 288
BstYI	RGATCY	2 cut(s)	251, 288
Bsu15I	ATCGAT	1 cut(s)	9
BsuRI	GGCC	2 cut(s)	334, 491
BsuTUI	ATCGAT	1 cut(s)	9
BtsCI	GGATG	6 cut(s)	85, 154, 481, 653, 904, 1093
BtsI	GCAGTG	1 cut(s)	694
BtsIMutI	CAGTG	6 cut(s)	412, 573, 694, 756, 847, 1108
Cac8I	GCNNGC	2 cut(s)	326, 961
CaiI	CAGNNNCTG	1 cut(s)	68
CfoI	GCGC	1 cut(s)	392
Cfr13I	GGNCC	1 cut(s)	489
ClaI	ATCGAT	1 cut(s)	9
CseI	GACGC	1 cut(s)	513
Csp6I	GTAC	2 cut(s)	511, 712
CspCI	CAANNNNNGTGG	2 cut(s)	760, 795
CviAII	CATG	3 cut(s)	320, 641, 818
CviQI	GTAC	2 cut(s)	511, 712
DdeI	CTNAG	5 cut(s)	186, 435, 593, 630, 967
DpnI	GATC	5 cut(s)	8, 12, 253, 290, 600
DpnII	GATC	5 cut(s)	6, 10, 251, 288, 598
DriI	GACNNNNNGTC	1 cut(s)	52
Eam1104I	CTCTTC	5 cut(s)	102, 222, 693, 1008, 1032
Eam1105I	GACNNNNNGTC	1 cut(s)	52
EarI	CTCTTC	5 cut(s)	102, 222, 693, 1008, 1032
Eco130I	CCWWGG	2 cut(s)	40, 293
Eco32I	GATATC	2 cut(s)	450, 916
Eco57I	CTGAAG	1 cut(s)	276
EcoRV	GATATC	2 cut(s)	450, 916
EcoT14I	CCWWGG	2 cut(s)	40, 293
ErhI	CCWWGG	2 cut(s)	40, 293
FaeI	CATG	3 cut(s)	323, 644, 821
FaqI	GGGAC	1 cut(s)	317
FatI	CATG	3 cut(s)	319, 640, 817
FauI	CCCGC	1 cut(s)	726
Fnu4HI	GCNGC	6 cut(s)	153, 171, 183, 663, 957, 1006
FokI	GGATG	6 cut(s)	72, 161, 488, 640, 911, 1100
Fsp4HI	GCNGC	6 cut(s)	153, 171, 183, 663, 957, 1006
FspBI	CTAG	1 cut(s)	393
GlaI	GCGC	1 cut(s)	391
GluI	GCNGC	6 cut(s)	153, 171, 183, 663, 957, 1006
GsuI	CTGGAG	1 cut(s)	328
HaeII	RGCGCY	1 cut(s)	393
HaeIII	GGCC	2 cut(s)	334, 491
HapII	CCGG	1 cut(s)	921
HgaI	GACGC	1 cut(s)	513
HhaI	GCGC	1 cut(s)	392
Hin1II	CATG	3 cut(s)	323, 644, 821
Hin6I	GCGC	1 cut(s)	390
HinP1I	GCGC	1 cut(s)	390
HpaII	CCGG	1 cut(s)	921
HphI	GGTGA	3 cut(s)	193, 353, 935
Hpy166II	GTNNAC	2 cut(s)	201, 565
Hpy188III	TCNNGA	8 cut(s)	89, 98, 401, 445, 602, 657, 798, 969
Hpy8I	GTNNAC	2 cut(s)	201, 565
Hpy99I	CGWCG	1 cut(s)	1013
HpyAV	CCTTC	3 cut(s)	10, 480, 973
HpyCH4III	ACNGT	4 cut(s)	54, 407, 842, 1103
HpyCH4IV	ACGT	1 cut(s)	714
HpyCH4V	TGCA	3 cut(s)	152, 611, 806
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 659, 980
HpyF3I	CTNAG	5 cut(s)	186, 435, 593, 630, 967
HpySE526I	ACGT	1 cut(s)	714
Hsp92II	CATG	3 cut(s)	323, 644, 821
HspAI	GCGC	1 cut(s)	390
Kzo9I	GATC	5 cut(s)	6, 10, 251, 288, 598
LmnI	GCTCC	2 cut(s)	730, 971
Lsp1109I	GCAGC	6 cut(s)	157, 164, 194, 649, 943, 1017
LweI	GCATC	5 cut(s)	139, 400, 662, 803, 983
MaeI	CTAG	1 cut(s)	393
MaeII	ACGT	1 cut(s)	714
MaeIII	GTNAC	1 cut(s)	752
MalI	GATC	5 cut(s)	8, 12, 253, 290, 600
MbiI	CCGCTC	1 cut(s)	733
MboI	GATC	5 cut(s)	6, 10, 251, 288, 598
MflI	RGATCY	2 cut(s)	251, 288
MluCI	AATT	5 cut(s)	77, 128, 141, 517, 947
MlyI	GAGTC	2 cut(s)	638, 959
MmeI	TCCRAC	2 cut(s)	102, 792
MseI	TTAA	2 cut(s)	707, 950
MslI	CAYNNNNRTG	2 cut(s)	206, 318
MspA1I	CMGCKG	1 cut(s)	185
MspI	CCGG	1 cut(s)	921
Mva1269I	GAATGC	1 cut(s)	435
MwoI	GCNNNNNNNGC	3 cut(s)	179, 659, 980
NdeII	GATC	5 cut(s)	6, 10, 251, 288, 598
NlaIII	CATG	3 cut(s)	323, 644, 821
PcsI	WCGNNNNNNNCGW	1 cut(s)	960
PctI	GAATGC	1 cut(s)	435
PfeI	GAWTC	8 cut(s)	275, 344, 419, 578, 626, 743, 926, 990
PkrI	GCNGC	6 cut(s)	154, 172, 184, 664, 958, 1007
PleI	GAGTC	2 cut(s)	638, 959
PpsI	GAGTC	2 cut(s)	638, 959
Ppu21I	YACGTR	1 cut(s)	715
PshAI	GACNNNNGTC	1 cut(s)	24
PspPI	GGNCC	1 cut(s)	489
PstNI	CAGNNNCTG	1 cut(s)	68
PsuI	RGATCY	2 cut(s)	251, 288
PvuII	CAGCTG	1 cut(s)	185
RsaI	GTAC	2 cut(s)	512, 713
RsaNI	GTAC	2 cut(s)	511, 712
RseI	CAYNNNNRTG	2 cut(s)	206, 318
SaqAI	TTAA	2 cut(s)	707, 950
SatI	GCNGC	6 cut(s)	153, 171, 183, 663, 957, 1006
Sau3AI	GATC	5 cut(s)	6, 10, 251, 288, 598
Sau96I	GGNCC	1 cut(s)	489
SchI	GAGTC	2 cut(s)	638, 959
SetI	ASST	9 cut(s)	139, 187, 215, 265, 529, 544, 664, 717, 778
SfaNI	GCATC	5 cut(s)	139, 400, 662, 803, 983
SmiMI	CAYNNNNRTG	2 cut(s)	206, 318
Sse9I	AATT	5 cut(s)	77, 128, 141, 517, 947
SsiI	CCGC	2 cut(s)	173, 733
SspI	AATATT	1 cut(s)	848
SspMI	CTAG	1 cut(s)	393
StyI	CCWWGG	2 cut(s)	40, 293
TaaI	ACNGT	4 cut(s)	54, 407, 842, 1103
TaiI	ACGT	1 cut(s)	717
TaqI	TCGA	4 cut(s)	9, 603, 977, 993
TasI	AATT	5 cut(s)	77, 128, 141, 517, 947
TatI	WGTACW	1 cut(s)	510
TfiI	GAWTC	8 cut(s)	275, 344, 419, 578, 626, 743, 926, 990
Tru1I	TTAA	2 cut(s)	707, 950
Tru9I	TTAA	2 cut(s)	707, 950
TscAI	CASTG	6 cut(s)	412, 580, 694, 763, 847, 1108
TseI	GCWGC	6 cut(s)	152, 170, 182, 662, 956, 1005
TspDTI	ATGAA	2 cut(s)	121, 708
TspGWI	ACGGA	2 cut(s)	36, 1062
TspRI	CASTG	6 cut(s)	412, 580, 694, 763, 847, 1108
XapI	RAATTY	2 cut(s)	128, 517
XspI	CTAG	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.