Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0011191

Physical Location & Seq

Genomic Coordinates Forward (+)

79651864 .. 79656036

Gene Structure 4173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG622400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1437 bp

ATGCACATGCACTGGAAGTTTCACGAGACCGTACAAGTTTGTTGTGATAACTTCCCTAAGGAGAAAATCAAGGAAATGGCAACAATGCTTGCAAGGCTGAGTGGTGGTATTGTGATAAATATACATAATACAAAAACAATCATCATGTTTCGTGGAAGAAATTACCGTCAACCTAAAAATTTGATACCTTTCAATACCCTTACGAAAAGGAAGGCATTATTCAAGGCCAGATTTGAACAAGCTCTTGAGTCGCAGAAGCTAAACATTAAGAAGATAGAACAGGAGCTACGCAGAAGTGGTGTTAATCCTGAGGATCCAGTTGCTATGGCCAGTATCCAGAGAGTCGCCTCCTCATTCTTCAATGCAATTGATCAGAAGGAGGGGAGTCCTTATGTATTCCATGGGGATAAGCTATCACTAGCAGAGACTGATAACAAATTGAGACATTTAGAACCTCCTGATCAAAATGAGCAGGAGGAGTTAGACAAGTTCATCTCTGAGATTGAAAATGCAGCTGAACGCGAGTGGGCTGCTGAGGAAGCAGCAGAGAAAGAAGAGTTTACCCGATTAAGGTATTGGAACAAAGAAGAATTTGGGGGGAGATACAGAAGATCTGAACCACTTGAAAATGACAGCTCTGATGATGAGACAAAAAGGACAAGGGATCGGAGGGATACACGTGGCAAGCAGATGCCTGTTGATAGTGATTATGAAGATGACGAGGGGGAATATTCTAATAGTGTCGCGCATACTAGTGTTTTTGACAGTGATGCTGATGATTCTGATGGAATGCAAGAGAATTTCAAGGCATCTACAATTGACAGGGTAAAGCAATATCAGATTGGGAGGGGAAAAAATGATGGACACTTAAAGAATAGTGTTAAAGCTAATAATAGAAAGATCATGGCAGATGAACGTACTGAATCAGAAGACACATTCAGTGATCTTGAAAATGCAATGTGGCACTCCGATGATGAGGAAGAGCAGGCATCAACACCATCAAGAGCTGTAAAATATGATTACCGAAGCAGCAGTGATGATGAAGAGGACTTGAAGTTAAATTACGTGAAGTTAGAAAAGAAGCAGCAGGTAGATAATGCCGATGATTCCGATGAAGCTCATGACAAATTCAAGTTATCAAGTGGTGCAAAGGGGAAGCATGCCAGTGAATATTTAAAAGGAGATGCTGATTTTAACATAAGAAGAGAGTTGGTTGAAGAAGACTTGGAGTCGGACGATCTGTTCAGTGATGATGAAACTGCAATGTGGGAATCAGAGGTGGTGAAAGATTCACGGGCATCAACTGCGGGAAAATACAATTACAGGAGCAGTGAAAAAGAGGATTATCCAGTAAGAAGAGAAGAGAAGGGCAACGGGGATGATGTCAAGCGGACTAGGACGCCAAAAGAGTTGGATGAGATTTGGGACAGTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006974 GO:0008150 GO:0009314 GO:0009628 GO:0009889 GO:0009987 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010564 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031570 GO:0033043 GO:0033554 GO:0040020 GO:0043565 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051445 GO:0051716 GO:0051726 GO:0051783 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRS1_YhbY

Protein Analysis

478

Amino Acids

55.47

Weight (kDa)

4.92

Isoelectric Point (pI)

52.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27550 AT3G27550 AT3G27550
fragaria_vesca	FvH4_6g51690
malus_domestica	MD09G1023500.v1.1 MD17G1023000.v1.1
prunus_persica	Prupe.3G293300_v2.0.a1
pyrus_communis	pycom111g01960 pycom17g01970
rosa_chinensis	RchiOBHm_Chr2g0173221
rosa_laevigata	RLG00000022171
rosa_multiflora	Rmu_sc0000860.1_g000003 Rmu_sc0039142.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079110
rosa_rugosa	Rorug02G0566600
rosa_samantha	Rh2AG646500 Rh2BG657200 Rh2CG622400 Rh2DG670800
rosa_wichuraiana	Rw2G053100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1078
AccII	CGCG	2 cut(s)	522, 746
AciI	CCGC	2 cut(s)	1307, 1390
AclWI	GGATC	3 cut(s)	308, 321, 672
AcoI	YGGCCR	1 cut(s)	327
AcsI	RAATTY	4 cut(s)	178, 590, 799, 1127
AcvI	CACGTG	1 cut(s)	680
AcyI	GRCGYC	1 cut(s)	1400
AfaI	GTAC	2 cut(s)	33, 919
AfiI	CCNNNNNNNGG	1 cut(s)	570
AflIII	ACRYGT	1 cut(s)	677
AhdI	GACNNNNNGTC	1 cut(s)	1228
AhlI	ACTAGT	1 cut(s)	752
AloI	GAACNNNNNNTCC	2 cut(s)	1226, 1258
AluBI	AGCT	9 cut(s)	242, 259, 286, 412, 515, 636, 887, 1007, 1118
AluI	AGCT	9 cut(s)	242, 259, 286, 412, 515, 636, 887, 1007, 1118
Alw26I	GTCTC	4 cut(s)	20, 419, 436, 641
AlwI	GGATC	3 cut(s)	308, 321, 672
AlwNI	CAGNNNCTG	1 cut(s)	428
AoxI	GGCC	2 cut(s)	225, 327
ApeKI	GCWGC	5 cut(s)	512, 530, 542, 1029, 1084
ApoI	RAATTY	4 cut(s)	178, 590, 799, 1127
AspLEI	GCGC	1 cut(s)	748
AsuHPI	GGTGA	1 cut(s)	1294
AxyI	CCTNAGG	2 cut(s)	57, 309
BalI	TGGCCA	1 cut(s)	329
BamHI	GGATCC	1 cut(s)	313
BarI	GAAGNNNNNNTAC	2 cut(s)	1046, 1078
BauI	CACGAG	1 cut(s)	23
BbrPI	CACGTG	1 cut(s)	680
BbsI	GAAGAC	2 cut(s)	936, 1227
BbvCI	CCTCAGC	1 cut(s)	534
BbvI	GCAGC	5 cut(s)	517, 524, 554, 1041, 1096
BccI	CCATC	3 cut(s)	779, 854, 1006
BcgI	CGANNNNNNTGC	2 cut(s)	512, 546
BciVI	GTATCC	2 cut(s)	344, 667
BclI	TGATCA	2 cut(s)	370, 460
BcoDI	GTCTC	4 cut(s)	20, 419, 436, 641
BcuI	ACTAGT	1 cut(s)	752
BfaI	CTAG	3 cut(s)	419, 753, 1395
BfuAI	ACCTGC	1 cut(s)	1078
BfuI	GTATCC	2 cut(s)	344, 667
BglII	AGATCT	1 cut(s)	611
BisI	GCNGC	5 cut(s)	513, 531, 543, 1030, 1085
BlsI	GCNGC	5 cut(s)	514, 532, 544, 1031, 1086
BmeRI	GACNNNNNGTC	1 cut(s)	1228
BmiI	GGNNCC	1 cut(s)	315
BmsI	GCATC	6 cut(s)	681, 760, 818, 998, 1174, 1307
BpiI	GAAGAC	2 cut(s)	936, 1227
Bpu10I	CCTNAGC	1 cut(s)	534
BpuEI	CTTGAG	1 cut(s)	266
BsaAI	YACGTR	2 cut(s)	680, 1066
BsaHI	GRCGYC	1 cut(s)	1400
BsaI	GGTCTC	1 cut(s)	20
BsaJI	CCNNGG	1 cut(s)	400
Bsc4I	CCNNNNNNNGG	1 cut(s)	570
Bse1I	ACTGG	5 cut(s)	17, 317, 330, 1164, 1349
Bse21I	CCTNAGG	2 cut(s)	57, 309
Bse3DI	GCAATG	2 cut(s)	963, 1269
BseDI	CCNNGG	1 cut(s)	400
BseGI	GGATG	2 cut(s)	1384, 1420
BseLI	CCNNNNNNNGG	1 cut(s)	570
BseMI	GCAATG	2 cut(s)	963, 1269
BseMII	CTCAG	4 cut(s)	89, 300, 489, 525
BseNI	ACTGG	5 cut(s)	17, 317, 330, 1164, 1349
BseRI	GAGGAG	2 cut(s)	340, 491
BseXI	GCAGC	5 cut(s)	517, 524, 554, 1041, 1096
Bsh1236I	CGCG	2 cut(s)	522, 746
BshFI	GGCC	2 cut(s)	227, 329
BslI	CCNNNNNNNGG	1 cut(s)	570
BsmAI	GTCTC	4 cut(s)	20, 419, 436, 641
BsmI	GAATGC	1 cut(s)	795
BsnI	GGCC	2 cut(s)	227, 329
Bso31I	GGTCTC	1 cut(s)	20
Bsp143I	GATC	8 cut(s)	313, 370, 460, 611, 664, 900, 943, 1237
Bsp19I	CCATGG	1 cut(s)	400
BspACI	CCGC	2 cut(s)	1307, 1390
BspANI	GGCC	2 cut(s)	227, 329
BspCNI	CTCAG	4 cut(s)	90, 301, 490, 526
BspFNI	CGCG	2 cut(s)	522, 746
BspHI	TCATGA	1 cut(s)	1120
BspLI	GGNNCC	1 cut(s)	315
BspMI	ACCTGC	1 cut(s)	1078
BspPI	GGATC	3 cut(s)	308, 321, 672
BspQI	GCTCTTC	1 cut(s)	975
BspTNI	GGTCTC	1 cut(s)	20
BsrDI	GCAATG	2 cut(s)	963, 1269
BsrI	ACTGG	5 cut(s)	17, 317, 330, 1164, 1349
BssECI	CCNNGG	1 cut(s)	400
BssMI	GATC	8 cut(s)	313, 370, 460, 611, 664, 900, 943, 1237
BssNI	GRCGYC	1 cut(s)	1400
BssSI	CACGAG	1 cut(s)	23
BssT1I	CCWWGG	1 cut(s)	400
Bst2BI	CACGAG	1 cut(s)	23
Bst4CI	ACNGT	4 cut(s)	31, 167, 767, 1430
Bst6I	CTCTTC	6 cut(s)	549, 975, 1038, 1198, 1351, 1356
BstACI	GRCGYC	1 cut(s)	1400
BstAPI	GCANNNNNTGC	1 cut(s)	1304
BstBAI	YACGTR	2 cut(s)	680, 1066
BstC8I	GCNNGC	4 cut(s)	90, 686, 987, 1161
BstDEI	CTNAG	5 cut(s)	57, 98, 309, 498, 534
BstDSI	CCRYGG	1 cut(s)	400
BstF5I	GGATG	2 cut(s)	1384, 1420
BstFNI	CGCG	2 cut(s)	522, 746
BstHHI	GCGC	1 cut(s)	748
BstKTI	GATC	8 cut(s)	316, 373, 463, 614, 667, 903, 946, 1240
BstMAI	GTCTC	4 cut(s)	20, 419, 436, 641
BstMBI	GATC	8 cut(s)	313, 370, 460, 611, 664, 900, 943, 1237
BstMWI	GCNNNNNNNGC	3 cut(s)	94, 539, 1304
BstNSI	RCATGY	2 cut(s)	10, 1163
BstUI	CGCG	2 cut(s)	522, 746
BstV1I	GCAGC	5 cut(s)	517, 524, 554, 1041, 1096
BstV2I	GAAGAC	2 cut(s)	936, 1227
BstX2I	RGATCY	2 cut(s)	313, 611
BstYI	RGATCY	2 cut(s)	313, 611
Bsu36I	CCTNAGG	2 cut(s)	57, 309
BsuI	GTATCC	2 cut(s)	344, 667
BsuRI	GGCC	2 cut(s)	227, 329
BtgI	CCRYGG	1 cut(s)	400
BtsCI	GGATG	2 cut(s)	1384, 1420
BtsI	GCAGTG	2 cut(s)	1039, 1336
BtsIMutI	CAGTG	8 cut(s)	10, 772, 946, 1039, 1171, 1252, 1336, 1435
BveI	ACCTGC	1 cut(s)	1078
Cac8I	GCNNGC	4 cut(s)	90, 686, 987, 1161
CaiI	CAGNNNCTG	1 cut(s)	428
CciI	TCATGA	1 cut(s)	1120
CfoI	GCGC	1 cut(s)	748
CseI	GACGC	1 cut(s)	1408
Csp6I	GTAC	2 cut(s)	32, 918
CviAII	CATG	6 cut(s)	7, 145, 401, 904, 1121, 1160
CviQI	GTAC	2 cut(s)	32, 918
DdeI	CTNAG	5 cut(s)	57, 98, 309, 498, 534
DpnI	GATC	8 cut(s)	315, 372, 462, 613, 666, 902, 945, 1239
DpnII	GATC	8 cut(s)	313, 370, 460, 611, 664, 900, 943, 1237
DraI	TTTAAA	1 cut(s)	1176
DriI	GACNNNNNGTC	1 cut(s)	1228
EaeI	YGGCCR	1 cut(s)	327
Eam1104I	CTCTTC	6 cut(s)	549, 975, 1038, 1198, 1351, 1356
Eam1105I	GACNNNNNGTC	1 cut(s)	1228
EarI	CTCTTC	6 cut(s)	549, 975, 1038, 1198, 1351, 1356
Eco130I	CCWWGG	1 cut(s)	400
Eco31I	GGTCTC	1 cut(s)	20
Eco72I	CACGTG	1 cut(s)	680
Eco81I	CCTNAGG	2 cut(s)	57, 309
EcoT14I	CCWWGG	1 cut(s)	400
ErhI	CCWWGG	1 cut(s)	400
FaeI	CATG	6 cut(s)	10, 148, 404, 907, 1124, 1163
FatI	CATG	6 cut(s)	6, 144, 400, 903, 1120, 1159
FauI	CCCGC	1 cut(s)	1300
FbaI	TGATCA	2 cut(s)	370, 460
Fnu4HI	GCNGC	5 cut(s)	513, 531, 543, 1030, 1085
FokI	GGATG	2 cut(s)	1391, 1427
Fsp4HI	GCNGC	5 cut(s)	513, 531, 543, 1030, 1085
FspBI	CTAG	3 cut(s)	419, 753, 1395
GlaI	GCGC	1 cut(s)	747
GluI	GCNGC	5 cut(s)	513, 531, 543, 1030, 1085
HaeIII	GGCC	2 cut(s)	227, 329
HgaI	GACGC	1 cut(s)	1408
HhaI	GCGC	1 cut(s)	748
Hin1I	GRCGYC	1 cut(s)	1400
Hin1II	CATG	6 cut(s)	10, 148, 404, 907, 1124, 1163
Hin6I	GCGC	1 cut(s)	746
HinP1I	GCGC	1 cut(s)	746
HincII	GTYRAC	1 cut(s)	170
HindII	GTYRAC	1 cut(s)	170
HinfI	GANTC	9 cut(s)	248, 342, 385, 779, 923, 1106, 1229, 1271, 1289
HphI	GGTGA	1 cut(s)	1294
Hpy166II	GTNNAC	2 cut(s)	170, 561
Hpy188III	TCNNGA	8 cut(s)	23, 245, 308, 337, 458, 947, 1002, 1121
Hpy8I	GTNNAC	2 cut(s)	170, 561
HpyAV	CCTTC	3 cut(s)	205, 370, 1360
HpyCH4III	ACNGT	4 cut(s)	31, 167, 767, 1430
HpyCH4IV	ACGT	3 cut(s)	679, 916, 1065
HpyCH4V	TGCA	9 cut(s)	4, 10, 92, 365, 512, 793, 956, 1148, 1262
HpyF10VI	GCNNNNNNNGC	3 cut(s)	94, 539, 1304
HpyF3I	CTNAG	5 cut(s)	57, 98, 309, 498, 534
HpySE526I	ACGT	3 cut(s)	679, 916, 1065
Hsp92I	GRCGYC	1 cut(s)	1400
Hsp92II	CATG	6 cut(s)	10, 148, 404, 907, 1124, 1163
HspAI	GCGC	1 cut(s)	746
Ksp22I	TGATCA	2 cut(s)	370, 460
Kzo9I	GATC	8 cut(s)	313, 370, 460, 611, 664, 900, 943, 1237
LguI	GCTCTTC	1 cut(s)	975
LmnI	GCTCC	2 cut(s)	283, 1326
Lsp1109I	GCAGC	5 cut(s)	517, 524, 554, 1041, 1096
LweI	GCATC	6 cut(s)	681, 760, 818, 998, 1174, 1307
MaeI	CTAG	3 cut(s)	419, 753, 1395
MaeII	ACGT	3 cut(s)	679, 916, 1065
MalI	GATC	8 cut(s)	315, 372, 462, 613, 666, 902, 945, 1239
MboI	GATC	8 cut(s)	313, 370, 460, 611, 664, 900, 943, 1237
MfeI	CAATTG	2 cut(s)	366, 816
MflI	RGATCY	2 cut(s)	313, 611
MlsI	TGGCCA	1 cut(s)	329
MluNI	TGGCCA	1 cut(s)	329
MlyI	GAGTC	4 cut(s)	257, 351, 394, 1238
MmeI	TCCRAC	2 cut(s)	1212, 1392
Mox20I	TGGCCA	1 cut(s)	329
MscI	TGGCCA	1 cut(s)	329
MseI	TTAA	8 cut(s)	267, 303, 569, 869, 882, 1058, 1175, 1194
MslI	CAYNNNNRTG	3 cut(s)	753, 969, 1164
Msp20I	TGGCCA	1 cut(s)	329
MspA1I	CMGCKG	1 cut(s)	515
MunI	CAATTG	2 cut(s)	366, 816
Mva1269I	GAATGC	1 cut(s)	795
MvnI	CGCG	2 cut(s)	522, 746
MwoI	GCNNNNNNNGC	3 cut(s)	94, 539, 1304
NcoI	CCATGG	1 cut(s)	400
NdeII	GATC	8 cut(s)	313, 370, 460, 611, 664, 900, 943, 1237
NlaIII	CATG	6 cut(s)	10, 148, 404, 907, 1124, 1163
NlaIV	GGNNCC	1 cut(s)	315
NspI	RCATGY	2 cut(s)	10, 1163
PaeI	GCATGC	1 cut(s)	1163
PagI	TCATGA	1 cut(s)	1120
PciSI	GCTCTTC	1 cut(s)	975
PctI	GAATGC	1 cut(s)	795
PfeI	GAWTC	5 cut(s)	779, 923, 1106, 1271, 1289
PkrI	GCNGC	5 cut(s)	514, 532, 544, 1031, 1086
PleI	GAGTC	4 cut(s)	256, 350, 393, 1237
PmaCI	CACGTG	1 cut(s)	680
PmlI	CACGTG	1 cut(s)	680
PpsI	GAGTC	4 cut(s)	256, 350, 393, 1237
Ppu21I	YACGTR	2 cut(s)	680, 1066
PspCI	CACGTG	1 cut(s)	680
PspN4I	GGNNCC	1 cut(s)	315
PsrI	GAACNNNNNNTAC	2 cut(s)	270, 302
PstNI	CAGNNNCTG	1 cut(s)	428
PsuI	RGATCY	2 cut(s)	313, 611
PvuII	CAGCTG	1 cut(s)	515
RsaI	GTAC	2 cut(s)	33, 919
RsaNI	GTAC	2 cut(s)	32, 918
RseI	CAYNNNNRTG	3 cut(s)	753, 969, 1164
SapI	GCTCTTC	1 cut(s)	975
SaqAI	TTAA	8 cut(s)	267, 303, 569, 869, 882, 1058, 1175, 1194
SatI	GCNGC	5 cut(s)	513, 531, 543, 1030, 1085
Sau3AI	GATC	8 cut(s)	313, 370, 460, 611, 664, 900, 943, 1237
SchI	GAGTC	4 cut(s)	257, 351, 394, 1238
SfaNI	GCATC	6 cut(s)	681, 760, 818, 998, 1174, 1307
SmiMI	CAYNNNNRTG	3 cut(s)	753, 969, 1164
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
SpeI	ACTAGT	1 cut(s)	752
SphI	GCATGC	1 cut(s)	1163
SsiI	CCGC	2 cut(s)	1307, 1390
SspI	AATATT	2 cut(s)	731, 1172
SspMI	CTAG	3 cut(s)	419, 753, 1395
StyI	CCWWGG	1 cut(s)	400
TaaI	ACNGT	4 cut(s)	31, 167, 767, 1430
TaiI	ACGT	3 cut(s)	682, 919, 1068
TfiI	GAWTC	5 cut(s)	779, 923, 1106, 1271, 1289
Tru1I	TTAA	8 cut(s)	267, 303, 569, 869, 882, 1058, 1175, 1194
Tru9I	TTAA	8 cut(s)	267, 303, 569, 869, 882, 1058, 1175, 1194
TscAI	CASTG	8 cut(s)	17, 772, 946, 1039, 1171, 1252, 1336, 1435
TseI	GCWGC	5 cut(s)	512, 530, 542, 1029, 1084
TspDTI	ATGAA	6 cut(s)	481, 726, 927, 1056, 1128, 1269
TspRI	CASTG	8 cut(s)	17, 772, 946, 1039, 1171, 1252, 1336, 1435
XapI	RAATTY	4 cut(s)	178, 590, 799, 1127
XceI	RCATGY	2 cut(s)	10, 1163
XspI	CTAG	3 cut(s)	419, 753, 1395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.