Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039142.1

Orthogroup ID

OG0011191

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 768

Gene Structure 768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039142.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

gccaagagaaaagtggcattgctactacagaagctcaaaaaatatgagcttccagatctgccagctccccgacatgatccggagctgtttaccctagagcagcttcaagcatttaagaagattggcttcagaaacaaaaactatgttcctgttggtgttcgtggggtctttggaggagttgtccagaatatgcacatgcactggaagtttcacgagaccgtacaagtttgttgtgataacttccctaaggagaaaatcaaggaaatggcaacaatgcttgcaaggctgagtggtggtattgtgataaatatacataatacaaaaacaatcatcatgtttcgtggaagaaattaccgtcaacctaaaaatttgatacctttcaatacccttacgaaaaggaaggtgcgtaaacataagtttcccttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006974 GO:0008150 GO:0009314 GO:0009628 GO:0009889 GO:0009987 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010564 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031570 GO:0033043 GO:0033554 GO:0040020 GO:0043565 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051445 GO:0051716 GO:0051726 GO:0051783 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRS1_YhbY

Protein Analysis

142

Amino Acids

16.65

Weight (kDa)

10.48

Isoelectric Point (pI)

47.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27550 AT3G27550 AT3G27550
fragaria_vesca	FvH4_6g51690
malus_domestica	MD09G1023500.v1.1 MD17G1023000.v1.1
prunus_persica	Prupe.3G293300_v2.0.a1
pyrus_communis	pycom111g01960 pycom17g01970
rosa_chinensis	RchiOBHm_Chr2g0173221
rosa_laevigata	RLG00000022171
rosa_multiflora	Rmu_sc0000860.1_g000003 Rmu_sc0039142.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079110
rosa_rugosa	Rorug02G0566600
rosa_samantha	Rh2AG646500 Rh2BG657200 Rh2CG622400 Rh2DG670800
rosa_wichuraiana	Rw2G053100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	79
AclWI	GGATC	1 cut(s)	71
AcsI	RAATTY	1 cut(s)	367
AcuI	CTGAAG	1 cut(s)	112
AfaI	GTAC	1 cut(s)	222
AgsI	TTSAA	2 cut(s)	107, 382
AluBI	AGCT	5 cut(s)	34, 49, 65, 85, 103
AluI	AGCT	5 cut(s)	34, 49, 65, 85, 103
Alw26I	GTCTC	1 cut(s)	209
AlwI	GGATC	1 cut(s)	71
Aor13HI	TCCGGA	1 cut(s)	79
ApeKI	GCWGC	1 cut(s)	100
ApoI	RAATTY	1 cut(s)	367
AxyI	CCTNAGG	1 cut(s)	246
BauI	CACGAG	1 cut(s)	212
BbvI	GCAGC	1 cut(s)	112
BcoDI	GTCTC	1 cut(s)	209
BfaI	CTAG	1 cut(s)	95
BfmI	CTRYAG	1 cut(s)	26
BglII	AGATCT	1 cut(s)	55
BisI	GCNGC	1 cut(s)	101
BlsI	GCNGC	1 cut(s)	102
BsaI	GGTCTC	1 cut(s)	209
BsaWI	WCCGGW	1 cut(s)	79
BsaXI	ACNNNNNCTCC	2 cut(s)	165, 195
Bse1I	ACTGG	1 cut(s)	206
Bse21I	CCTNAGG	1 cut(s)	246
Bse3DI	GCAATG	1 cut(s)	17
BseAI	TCCGGA	1 cut(s)	79
BseMI	GCAATG	1 cut(s)	17
BseMII	CTCAG	1 cut(s)	278
BseNI	ACTGG	1 cut(s)	206
BseRI	GAGGAG	1 cut(s)	189
BseXI	GCAGC	1 cut(s)	112
BsiSI	CCGG	1 cut(s)	80
BsmAI	GTCTC	1 cut(s)	209
Bso31I	GGTCTC	1 cut(s)	209
Bsp13I	TCCGGA	1 cut(s)	79
Bsp143I	GATC	2 cut(s)	55, 76
BspCNI	CTCAG	1 cut(s)	279
BspEI	TCCGGA	1 cut(s)	79
BspPI	GGATC	1 cut(s)	71
BspTNI	GGTCTC	1 cut(s)	209
BsrDI	GCAATG	1 cut(s)	17
BsrI	ACTGG	1 cut(s)	206
BssMI	GATC	2 cut(s)	55, 76
BssSI	CACGAG	1 cut(s)	212
Bst2BI	CACGAG	1 cut(s)	212
Bst4CI	ACNGT	2 cut(s)	220, 356
BstC8I	GCNNGC	2 cut(s)	63, 279
BstDEI	CTNAG	2 cut(s)	246, 287
BstKTI	GATC	2 cut(s)	58, 79
BstMAI	GTCTC	1 cut(s)	209
BstMBI	GATC	2 cut(s)	55, 76
BstMWI	GCNNNNNNNGC	1 cut(s)	283
BstNSI	RCATGY	1 cut(s)	199
BstSFI	CTRYAG	1 cut(s)	26
BstV1I	GCAGC	1 cut(s)	112
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
Bsu36I	CCTNAGG	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	199
Cac8I	GCNNGC	2 cut(s)	63, 279
Csp6I	GTAC	1 cut(s)	221
CviAII	CATG	3 cut(s)	74, 196, 334
CviJI	RGCY	7 cut(s)	34, 49, 65, 85, 103, 126, 286
CviKI_1	RGCY	7 cut(s)	34, 49, 65, 85, 103, 126, 286
CviQI	GTAC	1 cut(s)	221
DdeI	CTNAG	2 cut(s)	246, 287
DpnI	GATC	2 cut(s)	57, 78
DpnII	GATC	2 cut(s)	55, 76
Eco31I	GGTCTC	1 cut(s)	209
Eco57I	CTGAAG	1 cut(s)	112
Eco81I	CCTNAGG	1 cut(s)	246
FaeI	CATG	3 cut(s)	77, 199, 337
FaiI	YATR	9 cut(s)	45, 75, 144, 191, 197, 311, 315, 335, 414
FalI	AAGNNNNNCTT	3 cut(s)	110, 142, 407
FatI	CATG	3 cut(s)	73, 195, 333
Fnu4HI	GCNGC	1 cut(s)	101
Fsp4HI	GCNGC	1 cut(s)	101
FspBI	CTAG	1 cut(s)	95
GluI	GCNGC	1 cut(s)	101
HapII	CCGG	1 cut(s)	80
Hin1II	CATG	3 cut(s)	77, 199, 337
HincII	GTYRAC	1 cut(s)	359
HindII	GTYRAC	1 cut(s)	359
HpaII	CCGG	1 cut(s)	80
Hpy166II	GTNNAC	3 cut(s)	90, 359, 410
Hpy188I	TCNGA	1 cut(s)	131
Hpy188III	TCNNGA	4 cut(s)	53, 80, 184, 212
Hpy8I	GTNNAC	3 cut(s)	90, 359, 410
HpyAV	CCTTC	1 cut(s)	394
HpyCH4III	ACNGT	2 cut(s)	220, 356
HpyCH4V	TGCA	3 cut(s)	193, 199, 281
HpyF10VI	GCNNNNNNNGC	1 cut(s)	283
HpyF3I	CTNAG	2 cut(s)	246, 287
Hsp92II	CATG	3 cut(s)	77, 199, 337
Kpn2I	TCCGGA	1 cut(s)	79
Kzo9I	GATC	2 cut(s)	55, 76
LmnI	GCTCC	2 cut(s)	70, 82
LpnPI	CCDG	6 cut(s)	66, 75, 93, 162, 187, 197
Lsp1109I	GCAGC	1 cut(s)	112
MaeI	CTAG	1 cut(s)	95
MalI	GATC	2 cut(s)	57, 78
MboI	GATC	2 cut(s)	55, 76
MboII	GAAGA	2 cut(s)	130, 357
MflI	RGATCY	1 cut(s)	55
MluCI	AATT	2 cut(s)	349, 367
MnlI	CCTC	1 cut(s)	167
MroI	TCCGGA	1 cut(s)	79
MseI	TTAA	1 cut(s)	114
MspI	CCGG	1 cut(s)	80
MwoI	GCNNNNNNNGC	1 cut(s)	283
NdeII	GATC	2 cut(s)	55, 76
NlaIII	CATG	3 cut(s)	77, 199, 337
NspI	RCATGY	1 cut(s)	199
PkrI	GCNGC	1 cut(s)	102
PsuI	RGATCY	1 cut(s)	55
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	1 cut(s)	101
Sau3AI	GATC	2 cut(s)	55, 76
SetI	ASST	8 cut(s)	36, 51, 67, 87, 105, 364, 379, 405
SfcI	CTRYAG	1 cut(s)	26
Sse9I	AATT	2 cut(s)	349, 367
SspMI	CTAG	1 cut(s)	95
TaaI	ACNGT	2 cut(s)	220, 356
TasI	AATT	2 cut(s)	349, 367
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TscAI	CASTG	1 cut(s)	206
TseI	GCWGC	1 cut(s)	100
TspRI	CASTG	1 cut(s)	206
XapI	RAATTY	1 cut(s)	367
XceI	RCATGY	1 cut(s)	199
XcmI	CCANNNNNNNNNTGG	1 cut(s)	10
XspI	CTAG	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.