MD17G1023000.v1.1

CRS1_YhbY

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Reverse (-)
1688540 .. 1691567
3028 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1023000.v1.1.491

Sequence Viewer

Length: 2019 bp
ATGTTCGCTGCGAGGAAGCTCAACAGTCACAGCTTCAAGTCCGCCTCTTCTCTCCTCCAATTCAATCCCTCCAAAAATGCCTTGTTAAGAGATGTCTCGGCGAAGGTTTTATCAAGCAATGTAGTTCAGCTAAGTAAACCGAGTGACGATTGTTTCTCTTCTTCATCGAGACCAGCCAATCCCTTCGATGGGTGGTCTAGGTCAATGTCGACATCTAGAGGGAGTAGTAGCATGAGGAGCAAAGTCGCTAAGCGGATGCAAAAGGAGTCTGGTAAGACTCTAAGAGAGGTTCGCAGAGCGAAAAAGCTTCAAAAGAAGCTGATGACCGAAAATGAGAGGCTCATTTACAACCTCAAAAGAGCCAAGAGGAAAGTAGCACTACTACTACAAAAGCTGAAAAAATACGAGCTTCCAGATCTGCCTGCACCCCGTCATGATCCTGAGATATTAACCCTCGAGCAGCTTCAGGCATTGAAGAAGATTGGCTTCAAAAATAAAAATTATGTTCCTGTTGGTGTTCGTGGGGTCTTTGGAGGAGTTGTCCAGAATATGCATCTACACTGGAAGTTTCACGAGACTGTACAAGTTTGCTGTGATAACTTCCCCAAAGAAAAGATCAAGGAAATGGCCTCTATGATTGCGAGACTGAGTGGTGGTATAGTGGTAAACATACACAATACTAAAACAATCATCATGTTTCGTGGAAGAAATTACCGGCAGCCAAAAAATTTAATACCTTTCAATACCCTTACAAAAAGGAAGGCATTATTCAAGGCAAGATTTGAACAAGCCCTCGAATCTCAGAAGCTAAACATAAAGAAGATAGAACAGCAGCTCCGCCGAAGTGGTATTAATCCTGAGGATCCAGTTGCCATTGCAAGCATCCAGAGAGTAGCTTCCTCATTCTTTAATGCAATTGATCAGAAGGACGGAAGTCCTTATGTCTTCCATAGGGACAAACCGTCTGTAGCAGAGCCTGATAATAAATTTAAACATCCAGAGCCTCCTGATGAGGAAGAGGAGGAGGAGTTGGACAAATTCATAGCTGAAATTGAGGATGCAGCGGAACGAGAGTGGGCTGCGGAGGAAGCAGCTGAGAAAGAGGAGTTCACAAGAATGAGGTATTGGAACAGAGAAGAGTATGGCGGGAGATATAGAAGATCTGAAGAACCTGAAAATGACGATTCTGATGATGAGACCCCAAGGGTAAGGGATTGGAGGCATACACATGGCAAGCAGAGGCCTAATGGTGATTACAAAGATGACGATGAGGAATGGCGTTCTAATAATGTTGTGGGCTCTAGTGTTCTCGACAGTGATGCTGATGATTCTGATGGAACGCCTGAGAAGTTCAAGATATCTCCAAGAGACATGGGGAGGCAGGATAAGTTTGTCAGGGCCAGGAATGATGAACGCTTTTATAGAAATCCTGAAGCTAACAACAGAAATGCTAATAACAGAAAGATTATGGCGGACGATGGCACTGAATCAGAAAATGTGCTCGGCGATCTTGATACTGCAATGTGGAAATTCAGTTCTGAGGAAGAGCACGACTCAACAGTATCAAGAGCTGCGAACTATGATTTCCGAAGTAGCAGTGATGAAGAAGAGGACTTAATGTACACGAAGGGAGGAAAGGAGCGGGTAAATGATTCCGAAAGCAACACTGGTTATTCCAACAAAGCTGGTGGCAAGTTTGAGGCATCAAGAGTTGCAGACGGGAAACTTGATAGGAGGATTGGCAGGGGCAACAGTGAATATTTCAAAAGAAATGCTGATGTTAGCACAAGAAAGCTGGTTGAGGAGGATATCAAGTCCAAGGATATCTCCGGCGATTCTGAAAACGAAATATGGGAATTAAACGCTGCCAGCGACTCTAGAGCATCAACGACAGGGAGAATCGATTACAACAGCAGCAACGAAGAGGGTTATCAAGTAAGGAGGGAAGAGAAGAAGGGAAATGGCAATAGAAGCACAAGAACAAGAAAAGACTTGGATGAGGATTGGGACAGTGATTAG

Protein Analysis

673

Amino Acids

77.2

Weight (kDa)

8.32

Isoelectric Point (pI)

54.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRS1_YhbY PF01985 150 - 234 7.9e-15 CRS1 / YhbY (CRM) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011191)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1642
AccI GTMKAC 1 cut(s) 209
AciI CCGC 8 cut(s) 42, 253, 838, 1064, 1082, 1146, 1472, 1642
AclWI GGATC 3 cut(s) 431, 857, 870
AcsI RAATTY 4 cut(s) 727, 986, 1037, 1529
AcuI CTGAAG 3 cut(s) 449, 1185, 1452
AfaI GTAC 2 cut(s) 582, 1622
AfiI CCNNNNNNNGG 2 cut(s) 188, 189
AhdI GACNNNNNGTC 1 cut(s) 961
AjnI CCWGG 1 cut(s) 1400
AjuI GAANNNNNNNTTGG 2 cut(s) 1108, 1140
AloI GAACNNNNNNTCC 4 cut(s) 819, 851, 1519, 1551
Alw21I GWGCWC 2 cut(s) 1503, 1551
Alw26I GTCTC 6 cut(s) 100, 163, 569, 637, 1190, 1362
AlwI GGATC 3 cut(s) 431, 857, 870
AlwNI CAGNNNCTG 1 cut(s) 977
Ama87I CYCGRG 1 cut(s) 455
AoxI GGCC 3 cut(s) 627, 1241, 1398
ApoI RAATTY 4 cut(s) 727, 986, 1037, 1529
AseI ATTAAT 1 cut(s) 852
AspS9I GGNCC 1 cut(s) 1398
AsuHPI GGTGA 1 cut(s) 1262
AvaI CYCGRG 1 cut(s) 455
AxyI CCTNAGG 1 cut(s) 858
BamHI GGATCC 1 cut(s) 862
BanII GRGCYC 1 cut(s) 1301
BauI CACGAG 1 cut(s) 572
BbsI GAAGAC 1 cut(s) 937
Bbv12I GWGCWC 2 cut(s) 1503, 1551
BbvI GCAGC 9 cut(s) 472, 730, 844, 1066, 1073, 1103, 1558, 1852, 1926
BccI CCATC 3 cut(s) 182, 1328, 1472
BcgI CGANNNNNNTGC 2 cut(s) 1301, 1335
BciT130I CCWGG 1 cut(s) 1402
BclI TGATCA 1 cut(s) 919
BcoDI GTCTC 6 cut(s) 100, 163, 569, 637, 1190, 1362
BfaI CTAG 4 cut(s) 198, 216, 1302, 1878
BfmI CTRYAG 1 cut(s) 966
BglII AGATCT 2 cut(s) 415, 1160
BlpI GCTNAGC 1 cut(s) 249
Bme1390I CCNGG 1 cut(s) 1402
BmeRI GACNNNNNGTC 1 cut(s) 961
BmeT110I CYCGRG 1 cut(s) 455
BmgT120I GGNCC 1 cut(s) 1398
BmiI GGNNCC 1 cut(s) 864
BmrFI CCNGG 1 cut(s) 1402
BmsI GCATC 7 cut(s) 246, 562, 891, 1048, 1309, 1712, 1892
BoxI GACNNNNGTC 1 cut(s) 933
BpiI GAAGAC 1 cut(s) 937
BplI GAGNNNNNCTC 2 cut(s) 1538, 1570
Bpu1102I GCTNAGC 1 cut(s) 249
Bsa29I ATCGAT 1 cut(s) 1902
BsaI GGTCTC 2 cut(s) 163, 1190
BsaJI CCNNGG 2 cut(s) 1202, 1818
BsaXI ACNNNNNCTCC 6 cut(s) 525, 555, 819, 849, 1013, 1043
Bsc4I CCNNNNNNNGG 2 cut(s) 188, 189
Bse118I RCCGGY 1 cut(s) 714
Bse1I ACTGG 3 cut(s) 566, 866, 1672
Bse21I CCTNAGG 1 cut(s) 858
Bse3DI GCAATG 3 cut(s) 124, 873, 1527
BseBI CCWGG 1 cut(s) 1402
BseCI ATCGAT 1 cut(s) 1902
BseDI CCNNGG 2 cut(s) 1202, 1818
BseGI GGATG 5 cut(s) 261, 882, 994, 1063, 2002
BseLI CCNNNNNNNGG 2 cut(s) 188, 189
BseMI GCAATG 3 cut(s) 124, 873, 1527
BseMII CTCAG 7 cut(s) 432, 638, 815, 849, 1086, 1335, 1530
BseNI ACTGG 3 cut(s) 566, 866, 1672
BseRI GAGGAG 8 cut(s) 44, 250, 549, 1034, 1037, 1040, 1118, 1817
BseXI GCAGC 9 cut(s) 472, 730, 844, 1066, 1073, 1103, 1558, 1852, 1926
BsgI GTGCAG 1 cut(s) 408
BshFI GGCC 3 cut(s) 629, 1243, 1400
BshVI ATCGAT 1 cut(s) 1902
BsiHKAI GWGCWC 2 cut(s) 1503, 1551
BsiHKCI CYCGRG 1 cut(s) 455
BsiSI CCGG 2 cut(s) 715, 1830
BslFI GGGAC 1 cut(s) 968
BslI CCNNNNNNNGG 2 cut(s) 188, 189
BsmAI GTCTC 6 cut(s) 100, 163, 569, 637, 1190, 1362
BsmFI GGGAC 1 cut(s) 968
BsnI GGCC 3 cut(s) 629, 1243, 1400
Bso31I GGTCTC 2 cut(s) 163, 1190
BsoBI CYCGRG 1 cut(s) 455
Bsp1286I GDGCHC 3 cut(s) 1301, 1503, 1551
Bsp1407I TGTACA 2 cut(s) 580, 1620
Bsp143I GATC 7 cut(s) 415, 436, 615, 862, 919, 1160, 1507
Bsp1720I GCTNAGC 1 cut(s) 249
BspACI CCGC 8 cut(s) 42, 253, 838, 1064, 1082, 1146, 1472, 1642
BspANI GGCC 3 cut(s) 629, 1243, 1400
BspCNI CTCAG 7 cut(s) 433, 639, 814, 850, 1087, 1336, 1531
BspDI ATCGAT 1 cut(s) 1902
BspHI TCATGA 1 cut(s) 433
BspLI GGNNCC 1 cut(s) 864
BspPI GGATC 3 cut(s) 431, 857, 870
BspQI GCTCTTC 1 cut(s) 1539
BspTNI GGTCTC 2 cut(s) 163, 1190
BsrBI CCGCTC 1 cut(s) 1642
BsrDI GCAATG 3 cut(s) 124, 873, 1527
BsrFI RCCGGY 1 cut(s) 714
BsrGI TGTACA 2 cut(s) 580, 1620
BsrI ACTGG 3 cut(s) 566, 866, 1672
BssAI RCCGGY 1 cut(s) 714
BssECI CCNNGG 2 cut(s) 1202, 1818
BssMI GATC 7 cut(s) 415, 436, 615, 862, 919, 1160, 1507
BssSI CACGAG 1 cut(s) 572
BssT1I CCWWGG 2 cut(s) 1202, 1818
Bst2BI CACGAG 1 cut(s) 572
Bst2UI CCWGG 1 cut(s) 1402
Bst4CI ACNGT 7 cut(s) 26, 580, 963, 1316, 1561, 1754, 2012
Bst6I CTCTTC 8 cut(s) 52, 163, 1011, 1131, 1539, 1602, 1917, 1941
BstAUI TGTACA 2 cut(s) 580, 1620
BstC8I GCNNGC 4 cut(s) 423, 880, 1235, 1870
BstF5I GGATG 5 cut(s) 261, 882, 994, 1063, 2002
BstKTI GATC 7 cut(s) 418, 439, 618, 865, 922, 1163, 1510
BstMAI GTCTC 6 cut(s) 100, 163, 569, 637, 1190, 1362
BstMBI GATC 7 cut(s) 415, 436, 615, 862, 919, 1160, 1507
BstMWI GCNNNNNNNGC 3 cut(s) 237, 1088, 1971
BstNI CCWGG 1 cut(s) 1402
BstPAI GACNNNNGTC 1 cut(s) 933
BstSCI CCNGG 1 cut(s) 1400
BstSFI CTRYAG 1 cut(s) 966
BstV1I GCAGC 9 cut(s) 472, 730, 844, 1066, 1073, 1103, 1558, 1852, 1926
BstV2I GAAGAC 1 cut(s) 937
BstX2I RGATCY 3 cut(s) 415, 862, 1160
BstYI RGATCY 3 cut(s) 415, 862, 1160
Bsu15I ATCGAT 1 cut(s) 1902
Bsu36I CCTNAGG 1 cut(s) 858
BsuRI GGCC 3 cut(s) 629, 1243, 1400
BsuTUI ATCGAT 1 cut(s) 1902
BtsCI GGATG 5 cut(s) 261, 882, 994, 1063, 2002
BtsI GCAGTG 1 cut(s) 1603
BtsIMutI CAGTG 7 cut(s) 559, 1321, 1482, 1603, 1665, 1759, 2017
Cac8I GCNNGC 4 cut(s) 423, 880, 1235, 1870
CaiI CAGNNNCTG 1 cut(s) 977
CciI TCATGA 1 cut(s) 433
Cfr10I RCCGGY 1 cut(s) 714
Cfr13I GGNCC 1 cut(s) 1398
ClaI ATCGAT 1 cut(s) 1902
Csp6I GTAC 2 cut(s) 581, 1621
CspCI CAANNNNNGTGG 2 cut(s) 1669, 1704
CviAII CATG 5 cut(s) 232, 434, 694, 1229, 1372
CviQI GTAC 2 cut(s) 581, 1621
DpnI GATC 7 cut(s) 417, 438, 617, 864, 921, 1162, 1509
DpnII GATC 7 cut(s) 415, 436, 615, 862, 919, 1160, 1507
DraI TTTAAA 1 cut(s) 991
DriI GACNNNNNGTC 1 cut(s) 961
Eam1104I CTCTTC 8 cut(s) 52, 163, 1011, 1131, 1539, 1602, 1917, 1941
Eam1105I GACNNNNNGTC 1 cut(s) 961
EarI CTCTTC 8 cut(s) 52, 163, 1011, 1131, 1539, 1602, 1917, 1941
EciI GGCGGA 3 cut(s) 31, 827, 1487
Eco130I CCWWGG 2 cut(s) 1202, 1818
Eco147I AGGCCT 1 cut(s) 1243
Eco24I GRGCYC 1 cut(s) 1301
Eco31I GGTCTC 2 cut(s) 163, 1190
Eco32I GATATC 3 cut(s) 1359, 1810, 1825
Eco57I CTGAAG 3 cut(s) 449, 1185, 1452
Eco81I CCTNAGG 1 cut(s) 858
Eco88I CYCGRG 1 cut(s) 455
EcoRII CCWGG 1 cut(s) 1400
EcoRV GATATC 3 cut(s) 1359, 1810, 1825
EcoT14I CCWWGG 2 cut(s) 1202, 1818
EcoT22I ATGCAT 1 cut(s) 555
EcoT38I GRGCYC 1 cut(s) 1301
ErhI CCWWGG 2 cut(s) 1202, 1818
FaeI CATG 5 cut(s) 235, 437, 697, 1232, 1375
FalI AAGNNNNNCTT 2 cut(s) 470, 502
FaqI GGGAC 1 cut(s) 968
FatI CATG 5 cut(s) 231, 433, 693, 1228, 1371
FauI CCCGC 2 cut(s) 1139, 1635
FbaI TGATCA 1 cut(s) 919
FblI GTMKAC 1 cut(s) 209
FokI GGATG 5 cut(s) 268, 869, 981, 1070, 2009
FriOI GRGCYC 1 cut(s) 1301
FspBI CTAG 4 cut(s) 198, 216, 1302, 1878
HaeIII GGCC 3 cut(s) 629, 1243, 1400
HapII CCGG 2 cut(s) 715, 1830
Hin1II CATG 5 cut(s) 235, 437, 697, 1232, 1375
HincII GTYRAC 1 cut(s) 210
HindII GTYRAC 1 cut(s) 210
HindIII AAGCTT 1 cut(s) 305
HpaII CCGG 2 cut(s) 715, 1830
HphI GGTGA 1 cut(s) 1262
Hpy166II GTNNAC 5 cut(s) 137, 210, 667, 1110, 1623
Hpy8I GTNNAC 5 cut(s) 137, 210, 667, 1110, 1623
HpyAV CCTTC 6 cut(s) 97, 193, 754, 919, 1621, 1948
HpyCH4III ACNGT 7 cut(s) 26, 580, 963, 1316, 1561, 1754, 2012
HpyCH4V TGCA 8 cut(s) 259, 425, 553, 878, 914, 1061, 1520, 1715
HpyF10VI GCNNNNNNNGC 3 cut(s) 237, 1088, 1971
Hsp92II CATG 5 cut(s) 235, 437, 697, 1232, 1375
Ksp22I TGATCA 1 cut(s) 919
Kzo9I GATC 7 cut(s) 415, 436, 615, 862, 919, 1160, 1507
LguI GCTCTTC 1 cut(s) 1539
LmnI GCTCC 3 cut(s) 237, 840, 1639
Lsp1109I GCAGC 9 cut(s) 472, 730, 844, 1066, 1073, 1103, 1558, 1852, 1926
LweI GCATC 7 cut(s) 246, 562, 891, 1048, 1309, 1712, 1892
MaeI CTAG 4 cut(s) 198, 216, 1302, 1878
MaeIII GTNAC 2 cut(s) 26, 143
MalI GATC 7 cut(s) 417, 438, 617, 864, 921, 1162, 1509
MbiI CCGCTC 1 cut(s) 1642
MboI GATC 7 cut(s) 415, 436, 615, 862, 919, 1160, 1507
MfeI CAATTG 1 cut(s) 915
MflI RGATCY 3 cut(s) 415, 862, 1160
MhlI GDGCHC 3 cut(s) 1301, 1503, 1551
MlyI GAGTC 4 cut(s) 271, 275, 1547, 1868
MmeI TCCRAC 2 cut(s) 1011, 1701
Mph1103I ATGCAT 1 cut(s) 555
MseI TTAA 8 cut(s) 86, 449, 731, 852, 909, 990, 1616, 1859
MslI CAYNNNNRTG 2 cut(s) 1115, 1227
MspA1I CMGCKG 2 cut(s) 1064, 1094
MspI CCGG 2 cut(s) 715, 1830
MspR9I CCNGG 1 cut(s) 1402
MunI CAATTG 1 cut(s) 915
MvaI CCWGG 1 cut(s) 1402
MwoI GCNNNNNNNGC 3 cut(s) 237, 1088, 1971
NdeII GATC 7 cut(s) 415, 436, 615, 862, 919, 1160, 1507
NlaIII CATG 5 cut(s) 235, 437, 697, 1232, 1375
NlaIV GGNNCC 1 cut(s) 864
NmeAIII GCCGAG 2 cut(s) 77, 1482
NmuCI GTSAC 2 cut(s) 26, 143
NsiI ATGCAT 1 cut(s) 555
PaeR7I CTCGAG 1 cut(s) 455
PagI TCATGA 1 cut(s) 433
PceI AGGCCT 1 cut(s) 1243
PciSI GCTCTTC 1 cut(s) 1539
PcsI WCGNNNNNNNCGW 1 cut(s) 1869
PfeI GAWTC 7 cut(s) 797, 1184, 1328, 1487, 1652, 1835, 1899
PleI GAGTC 4 cut(s) 271, 274, 1547, 1868
PpsI GAGTC 4 cut(s) 271, 274, 1547, 1868
PshAI GACNNNNGTC 1 cut(s) 933
PshBI ATTAAT 1 cut(s) 852
Psp6I CCWGG 1 cut(s) 1400
PspGI CCWGG 1 cut(s) 1400
PspN4I GGNNCC 1 cut(s) 864
PspPI GGNCC 1 cut(s) 1398
PspXI VCTCGAGB 1 cut(s) 455
PstNI CAGNNNCTG 1 cut(s) 977
PsuI RGATCY 3 cut(s) 415, 862, 1160
PvuII CAGCTG 1 cut(s) 1094
RsaI GTAC 2 cut(s) 582, 1622
RsaNI GTAC 2 cut(s) 581, 1621
RseI CAYNNNNRTG 2 cut(s) 1115, 1227
SalI GTCGAC 1 cut(s) 208
SapI GCTCTTC 1 cut(s) 1539
SaqAI TTAA 8 cut(s) 86, 449, 731, 852, 909, 990, 1616, 1859
Sau3AI GATC 7 cut(s) 415, 436, 615, 862, 919, 1160, 1507
Sau96I GGNCC 1 cut(s) 1398
SchI GAGTC 4 cut(s) 271, 275, 1547, 1868
ScrFI CCNGG 1 cut(s) 1402
SduI GDGCHC 3 cut(s) 1301, 1503, 1551
SfaNI GCATC 7 cut(s) 246, 562, 891, 1048, 1309, 1712, 1892
SfcI CTRYAG 1 cut(s) 966
Sfr274I CTCGAG 1 cut(s) 455
SlaI CTCGAG 1 cut(s) 455
SmiMI CAYNNNNRTG 2 cut(s) 1115, 1227
SmlI CTYRAG 1 cut(s) 455
SmoI CTYRAG 1 cut(s) 455
SseBI AGGCCT 1 cut(s) 1243
SsiI CCGC 8 cut(s) 42, 253, 838, 1064, 1082, 1146, 1472, 1642
SspI AATATT 1 cut(s) 1760
SspMI CTAG 4 cut(s) 198, 216, 1302, 1878
StuI AGGCCT 1 cut(s) 1243
StyD4I CCNGG 1 cut(s) 1400
StyI CCWWGG 2 cut(s) 1202, 1818
TaaI ACNGT 7 cut(s) 26, 580, 963, 1316, 1561, 1754, 2012
TaqI TCGA 7 cut(s) 167, 186, 209, 456, 795, 1311, 1902
TaqII GACCGA 1 cut(s) 341
TatI WGTACW 2 cut(s) 580, 1620
TfiI GAWTC 7 cut(s) 797, 1184, 1328, 1487, 1652, 1835, 1899
Tru1I TTAA 8 cut(s) 86, 449, 731, 852, 909, 990, 1616, 1859
Tru9I TTAA 8 cut(s) 86, 449, 731, 852, 909, 990, 1616, 1859
TscAI CASTG 7 cut(s) 566, 1321, 1489, 1603, 1672, 1759, 2017
TseFI GTSAC 2 cut(s) 26, 143
Tsp45I GTSAC 2 cut(s) 26, 143
TspDTI ATGAA 4 cut(s) 153, 1030, 1425, 1617
TspGWI ACGGA 1 cut(s) 945
TspRI CASTG 7 cut(s) 566, 1321, 1489, 1603, 1672, 1759, 2017
VspI ATTAAT 1 cut(s) 852
XapI RAATTY 4 cut(s) 727, 986, 1037, 1529
XbaI TCTAGA 2 cut(s) 215, 1877
XhoI CTCGAG 1 cut(s) 455
XmiI GTMKAC 1 cut(s) 209
XspI CTAG 4 cut(s) 198, 216, 1302, 1878
Zsp2I ATGCAT 1 cut(s) 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.