Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0011191

Physical Location & Seq

Genomic Coordinates Forward (+)

89372939 .. 89377111

Gene Structure 4173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG670800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1437 bp

ATGCACATGCACTGGAAGTTTCACGAGACCGTACAAGTTTGTTGTGATAACTTCCCTAAGGAGAAAATCAAGGAAATGGCAACAATGCTTGCAAGGCTGAGTGGTGGTATTGTGATAAATATACATAATACAAAAACAATCATCATGTTTCGTGGAAGAAATTACCGTCAACCTAAAAATTTGATACCTTTCAATACCCTTACGAAAAGGAAGGCATTATTCAAGGCCAGATTTGAACAAGCTCTTGAGTCGCAGAAGCTAAACATTAAGAAGATAGAACAGGAGCTACGCAGAAGTGGTGTTAATCCTGAGGATCCAGTTGCTATGGCCAGTATCCAGAGAGTCGCCTCCTCATTCTTCAATGCAATTGATCAGAAGGAGGGGAGTCCTTATGTATTCCATGGGGATAAGCTATCACTAGCAGAGACTGATAACAAATTGAGACATTTAGAACCTCCTGATCAAAATGAGCAGGAGGAGTTAGACAAGTTCATCTCTGAGATTGAAAATGCAGCTGAACGCGAGTGGGCTGCTGAGGAAGCAGCAGAGAAAGAAGAGTTTACCCGATTAAGGTATTGGAACAAAGAAGAATTTGGGGGGAGATACAGAAGATCTGAACCACTTGAAAATGACAGCTCTGATGATGAGACAAAAAGGACAAGGGATCGGAGGGATACACGTGGCAAGCAGATGCCTGTTGATAGTGATTATGAAGATGACGAGGGGGAATATTCTAATAGTGTCGCGCATACTAGTGTTTTTGACAGTGATGCTGATGATTCTGATGGAATGCAAGAGAATTTCAAGGCATCTACAATTGACAGGGTAAAGCAATATCAGATTGGGAGGGGAAAAAATGATGGACACTTAAAGAATAGTGTTAAAGCTAATAATAGAAAGATCATGGCAGATGAACGTACTGAATCAGAAGACACATTCAGTGATCTTGAAAATGCAATGTGGCACTCCGATGATGAGGAAGAGCAGGCATCAACACCATCAAGAGCTGTAAAATATGATTACCGAAGCAGCAGTGATGATGAAGAGGACTTGAAGTTAAATTACGTGAAGTTAGAAAAGAAGCAGCAGGTAGATAATGCCGATGATTCCGATGAAGCTCATGACAAATTCAAGTTATCAAGTGGTGCAAAGGGGAAGCATGCCAGTGAATATTTAAAAGGAGATGCTGATTTTAACATAAGAAGAGAGTTGGTTGAAGAAGACTTGGAGTCGGACGATCTGTTCAGTGATGATGAAACTGCAATGTGGGAATCAGAGGTGGTGAAAGATTCACGGGCATCAACTGCGGGAAAATACAATTACAGGAGCAGTGAAAAAGAGGATTATCCAGTAAGAAGAGAAGAGAAGGGCAACGGGGATGATGTCAAGCGGACTAGGACGCCAAAAGAGTTGGATGAGATTTGGGACAGTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000077 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0006950 GO:0006974 GO:0008150 GO:0009314 GO:0009628 GO:0009889 GO:0009987 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010564 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031570 GO:0033043 GO:0033554 GO:0040020 GO:0043565 GO:0045786 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051252 GO:0051445 GO:0051716 GO:0051726 GO:0051783 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRS1_YhbY

Protein Analysis

478

Amino Acids

55.47

Weight (kDa)

4.92

Isoelectric Point (pI)

52.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27550 AT3G27550 AT3G27550
fragaria_vesca	FvH4_6g51690
malus_domestica	MD09G1023500.v1.1 MD17G1023000.v1.1
prunus_persica	Prupe.3G293300_v2.0.a1
pyrus_communis	pycom111g01960 pycom17g01970
rosa_chinensis	RchiOBHm_Chr2g0173221
rosa_laevigata	RLG00000022171
rosa_multiflora	Rmu_sc0000860.1_g000003 Rmu_sc0039142.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079110
rosa_rugosa	Rorug02G0566600
rosa_samantha	Rh2AG646500 Rh2BG657200 Rh2CG622400 Rh2DG670800
rosa_wichuraiana	Rw2G053100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1078
AccII	CGCG	2 cut(s)	522, 746
AciI	CCGC	2 cut(s)	1307, 1390
AclWI	GGATC	3 cut(s)	308, 321, 672
AcoI	YGGCCR	1 cut(s)	327
AcsI	RAATTY	4 cut(s)	178, 590, 799, 1127
AcvI	CACGTG	1 cut(s)	680
AcyI	GRCGYC	1 cut(s)	1400
AfaI	GTAC	2 cut(s)	33, 919
AfiI	CCNNNNNNNGG	1 cut(s)	570
AflIII	ACRYGT	1 cut(s)	677
AhdI	GACNNNNNGTC	1 cut(s)	1228
AhlI	ACTAGT	1 cut(s)	752
AloI	GAACNNNNNNTCC	2 cut(s)	1226, 1258
AluBI	AGCT	9 cut(s)	242, 259, 286, 412, 515, 636, 887, 1007, 1118
AluI	AGCT	9 cut(s)	242, 259, 286, 412, 515, 636, 887, 1007, 1118
Alw26I	GTCTC	4 cut(s)	20, 419, 436, 641
AlwI	GGATC	3 cut(s)	308, 321, 672
AlwNI	CAGNNNCTG	1 cut(s)	428
AoxI	GGCC	2 cut(s)	225, 327
ApeKI	GCWGC	5 cut(s)	512, 530, 542, 1029, 1084
ApoI	RAATTY	4 cut(s)	178, 590, 799, 1127
AspLEI	GCGC	1 cut(s)	748
AsuHPI	GGTGA	1 cut(s)	1294
AxyI	CCTNAGG	2 cut(s)	57, 309
BalI	TGGCCA	1 cut(s)	329
BamHI	GGATCC	1 cut(s)	313
BarI	GAAGNNNNNNTAC	2 cut(s)	1046, 1078
BauI	CACGAG	1 cut(s)	23
BbrPI	CACGTG	1 cut(s)	680
BbsI	GAAGAC	2 cut(s)	936, 1227
BbvCI	CCTCAGC	1 cut(s)	534
BbvI	GCAGC	5 cut(s)	517, 524, 554, 1041, 1096
BccI	CCATC	3 cut(s)	779, 854, 1006
BcgI	CGANNNNNNTGC	2 cut(s)	512, 546
BciVI	GTATCC	2 cut(s)	344, 667
BclI	TGATCA	2 cut(s)	370, 460
BcoDI	GTCTC	4 cut(s)	20, 419, 436, 641
BcuI	ACTAGT	1 cut(s)	752
BfaI	CTAG	3 cut(s)	419, 753, 1395
BfuAI	ACCTGC	1 cut(s)	1078
BfuI	GTATCC	2 cut(s)	344, 667
BglII	AGATCT	1 cut(s)	611
BisI	GCNGC	5 cut(s)	513, 531, 543, 1030, 1085
BlsI	GCNGC	5 cut(s)	514, 532, 544, 1031, 1086
BmeRI	GACNNNNNGTC	1 cut(s)	1228
BmiI	GGNNCC	1 cut(s)	315
BmsI	GCATC	6 cut(s)	681, 760, 818, 998, 1174, 1307
BpiI	GAAGAC	2 cut(s)	936, 1227
Bpu10I	CCTNAGC	1 cut(s)	534
BpuEI	CTTGAG	1 cut(s)	266
BsaAI	YACGTR	2 cut(s)	680, 1066
BsaHI	GRCGYC	1 cut(s)	1400
BsaI	GGTCTC	1 cut(s)	20
BsaJI	CCNNGG	1 cut(s)	400
Bsc4I	CCNNNNNNNGG	1 cut(s)	570
Bse1I	ACTGG	5 cut(s)	17, 317, 330, 1164, 1349
Bse21I	CCTNAGG	2 cut(s)	57, 309
Bse3DI	GCAATG	2 cut(s)	963, 1269
BseDI	CCNNGG	1 cut(s)	400
BseGI	GGATG	2 cut(s)	1384, 1420
BseLI	CCNNNNNNNGG	1 cut(s)	570
BseMI	GCAATG	2 cut(s)	963, 1269
BseMII	CTCAG	4 cut(s)	89, 300, 489, 525
BseNI	ACTGG	5 cut(s)	17, 317, 330, 1164, 1349
BseRI	GAGGAG	2 cut(s)	340, 491
BseXI	GCAGC	5 cut(s)	517, 524, 554, 1041, 1096
Bsh1236I	CGCG	2 cut(s)	522, 746
BshFI	GGCC	2 cut(s)	227, 329
BslI	CCNNNNNNNGG	1 cut(s)	570
BsmAI	GTCTC	4 cut(s)	20, 419, 436, 641
BsmI	GAATGC	1 cut(s)	795
BsnI	GGCC	2 cut(s)	227, 329
Bso31I	GGTCTC	1 cut(s)	20
Bsp143I	GATC	8 cut(s)	313, 370, 460, 611, 664, 900, 943, 1237
Bsp19I	CCATGG	1 cut(s)	400
BspACI	CCGC	2 cut(s)	1307, 1390
BspANI	GGCC	2 cut(s)	227, 329
BspCNI	CTCAG	4 cut(s)	90, 301, 490, 526
BspFNI	CGCG	2 cut(s)	522, 746
BspHI	TCATGA	1 cut(s)	1120
BspLI	GGNNCC	1 cut(s)	315
BspMI	ACCTGC	1 cut(s)	1078
BspPI	GGATC	3 cut(s)	308, 321, 672
BspQI	GCTCTTC	1 cut(s)	975
BspTNI	GGTCTC	1 cut(s)	20
BsrDI	GCAATG	2 cut(s)	963, 1269
BsrI	ACTGG	5 cut(s)	17, 317, 330, 1164, 1349
BssECI	CCNNGG	1 cut(s)	400
BssMI	GATC	8 cut(s)	313, 370, 460, 611, 664, 900, 943, 1237
BssNI	GRCGYC	1 cut(s)	1400
BssSI	CACGAG	1 cut(s)	23
BssT1I	CCWWGG	1 cut(s)	400
Bst2BI	CACGAG	1 cut(s)	23
Bst4CI	ACNGT	4 cut(s)	31, 167, 767, 1430
Bst6I	CTCTTC	6 cut(s)	549, 975, 1038, 1198, 1351, 1356
BstACI	GRCGYC	1 cut(s)	1400
BstAPI	GCANNNNNTGC	1 cut(s)	1304
BstBAI	YACGTR	2 cut(s)	680, 1066
BstC8I	GCNNGC	4 cut(s)	90, 686, 987, 1161
BstDEI	CTNAG	5 cut(s)	57, 98, 309, 498, 534
BstDSI	CCRYGG	1 cut(s)	400
BstF5I	GGATG	2 cut(s)	1384, 1420
BstFNI	CGCG	2 cut(s)	522, 746
BstHHI	GCGC	1 cut(s)	748
BstKTI	GATC	8 cut(s)	316, 373, 463, 614, 667, 903, 946, 1240
BstMAI	GTCTC	4 cut(s)	20, 419, 436, 641
BstMBI	GATC	8 cut(s)	313, 370, 460, 611, 664, 900, 943, 1237
BstMWI	GCNNNNNNNGC	3 cut(s)	94, 539, 1304
BstNSI	RCATGY	2 cut(s)	10, 1163
BstUI	CGCG	2 cut(s)	522, 746
BstV1I	GCAGC	5 cut(s)	517, 524, 554, 1041, 1096
BstV2I	GAAGAC	2 cut(s)	936, 1227
BstX2I	RGATCY	2 cut(s)	313, 611
BstYI	RGATCY	2 cut(s)	313, 611
Bsu36I	CCTNAGG	2 cut(s)	57, 309
BsuI	GTATCC	2 cut(s)	344, 667
BsuRI	GGCC	2 cut(s)	227, 329
BtgI	CCRYGG	1 cut(s)	400
BtsCI	GGATG	2 cut(s)	1384, 1420
BtsI	GCAGTG	2 cut(s)	1039, 1336
BtsIMutI	CAGTG	8 cut(s)	10, 772, 946, 1039, 1171, 1252, 1336, 1435
BveI	ACCTGC	1 cut(s)	1078
Cac8I	GCNNGC	4 cut(s)	90, 686, 987, 1161
CaiI	CAGNNNCTG	1 cut(s)	428
CciI	TCATGA	1 cut(s)	1120
CfoI	GCGC	1 cut(s)	748
CseI	GACGC	1 cut(s)	1408
Csp6I	GTAC	2 cut(s)	32, 918
CviAII	CATG	6 cut(s)	7, 145, 401, 904, 1121, 1160
CviQI	GTAC	2 cut(s)	32, 918
DdeI	CTNAG	5 cut(s)	57, 98, 309, 498, 534
DpnI	GATC	8 cut(s)	315, 372, 462, 613, 666, 902, 945, 1239
DpnII	GATC	8 cut(s)	313, 370, 460, 611, 664, 900, 943, 1237
DraI	TTTAAA	1 cut(s)	1176
DriI	GACNNNNNGTC	1 cut(s)	1228
EaeI	YGGCCR	1 cut(s)	327
Eam1104I	CTCTTC	6 cut(s)	549, 975, 1038, 1198, 1351, 1356
Eam1105I	GACNNNNNGTC	1 cut(s)	1228
EarI	CTCTTC	6 cut(s)	549, 975, 1038, 1198, 1351, 1356
Eco130I	CCWWGG	1 cut(s)	400
Eco31I	GGTCTC	1 cut(s)	20
Eco72I	CACGTG	1 cut(s)	680
Eco81I	CCTNAGG	2 cut(s)	57, 309
EcoT14I	CCWWGG	1 cut(s)	400
ErhI	CCWWGG	1 cut(s)	400
FaeI	CATG	6 cut(s)	10, 148, 404, 907, 1124, 1163
FatI	CATG	6 cut(s)	6, 144, 400, 903, 1120, 1159
FauI	CCCGC	1 cut(s)	1300
FbaI	TGATCA	2 cut(s)	370, 460
Fnu4HI	GCNGC	5 cut(s)	513, 531, 543, 1030, 1085
FokI	GGATG	2 cut(s)	1391, 1427
Fsp4HI	GCNGC	5 cut(s)	513, 531, 543, 1030, 1085
FspBI	CTAG	3 cut(s)	419, 753, 1395
GlaI	GCGC	1 cut(s)	747
GluI	GCNGC	5 cut(s)	513, 531, 543, 1030, 1085
HaeIII	GGCC	2 cut(s)	227, 329
HgaI	GACGC	1 cut(s)	1408
HhaI	GCGC	1 cut(s)	748
Hin1I	GRCGYC	1 cut(s)	1400
Hin1II	CATG	6 cut(s)	10, 148, 404, 907, 1124, 1163
Hin6I	GCGC	1 cut(s)	746
HinP1I	GCGC	1 cut(s)	746
HincII	GTYRAC	1 cut(s)	170
HindII	GTYRAC	1 cut(s)	170
HinfI	GANTC	9 cut(s)	248, 342, 385, 779, 923, 1106, 1229, 1271, 1289
HphI	GGTGA	1 cut(s)	1294
Hpy166II	GTNNAC	2 cut(s)	170, 561
Hpy188III	TCNNGA	8 cut(s)	23, 245, 308, 337, 458, 947, 1002, 1121
Hpy8I	GTNNAC	2 cut(s)	170, 561
HpyAV	CCTTC	3 cut(s)	205, 370, 1360
HpyCH4III	ACNGT	4 cut(s)	31, 167, 767, 1430
HpyCH4IV	ACGT	3 cut(s)	679, 916, 1065
HpyCH4V	TGCA	9 cut(s)	4, 10, 92, 365, 512, 793, 956, 1148, 1262
HpyF10VI	GCNNNNNNNGC	3 cut(s)	94, 539, 1304
HpyF3I	CTNAG	5 cut(s)	57, 98, 309, 498, 534
HpySE526I	ACGT	3 cut(s)	679, 916, 1065
Hsp92I	GRCGYC	1 cut(s)	1400
Hsp92II	CATG	6 cut(s)	10, 148, 404, 907, 1124, 1163
HspAI	GCGC	1 cut(s)	746
Ksp22I	TGATCA	2 cut(s)	370, 460
Kzo9I	GATC	8 cut(s)	313, 370, 460, 611, 664, 900, 943, 1237
LguI	GCTCTTC	1 cut(s)	975
LmnI	GCTCC	2 cut(s)	283, 1326
Lsp1109I	GCAGC	5 cut(s)	517, 524, 554, 1041, 1096
LweI	GCATC	6 cut(s)	681, 760, 818, 998, 1174, 1307
MaeI	CTAG	3 cut(s)	419, 753, 1395
MaeII	ACGT	3 cut(s)	679, 916, 1065
MalI	GATC	8 cut(s)	315, 372, 462, 613, 666, 902, 945, 1239
MboI	GATC	8 cut(s)	313, 370, 460, 611, 664, 900, 943, 1237
MfeI	CAATTG	2 cut(s)	366, 816
MflI	RGATCY	2 cut(s)	313, 611
MlsI	TGGCCA	1 cut(s)	329
MluNI	TGGCCA	1 cut(s)	329
MlyI	GAGTC	4 cut(s)	257, 351, 394, 1238
MmeI	TCCRAC	2 cut(s)	1212, 1392
Mox20I	TGGCCA	1 cut(s)	329
MscI	TGGCCA	1 cut(s)	329
MseI	TTAA	8 cut(s)	267, 303, 569, 869, 882, 1058, 1175, 1194
MslI	CAYNNNNRTG	3 cut(s)	753, 969, 1164
Msp20I	TGGCCA	1 cut(s)	329
MspA1I	CMGCKG	1 cut(s)	515
MunI	CAATTG	2 cut(s)	366, 816
Mva1269I	GAATGC	1 cut(s)	795
MvnI	CGCG	2 cut(s)	522, 746
MwoI	GCNNNNNNNGC	3 cut(s)	94, 539, 1304
NcoI	CCATGG	1 cut(s)	400
NdeII	GATC	8 cut(s)	313, 370, 460, 611, 664, 900, 943, 1237
NlaIII	CATG	6 cut(s)	10, 148, 404, 907, 1124, 1163
NlaIV	GGNNCC	1 cut(s)	315
NspI	RCATGY	2 cut(s)	10, 1163
PaeI	GCATGC	1 cut(s)	1163
PagI	TCATGA	1 cut(s)	1120
PciSI	GCTCTTC	1 cut(s)	975
PctI	GAATGC	1 cut(s)	795
PfeI	GAWTC	5 cut(s)	779, 923, 1106, 1271, 1289
PkrI	GCNGC	5 cut(s)	514, 532, 544, 1031, 1086
PleI	GAGTC	4 cut(s)	256, 350, 393, 1237
PmaCI	CACGTG	1 cut(s)	680
PmlI	CACGTG	1 cut(s)	680
PpsI	GAGTC	4 cut(s)	256, 350, 393, 1237
Ppu21I	YACGTR	2 cut(s)	680, 1066
PspCI	CACGTG	1 cut(s)	680
PspN4I	GGNNCC	1 cut(s)	315
PsrI	GAACNNNNNNTAC	2 cut(s)	270, 302
PstNI	CAGNNNCTG	1 cut(s)	428
PsuI	RGATCY	2 cut(s)	313, 611
PvuII	CAGCTG	1 cut(s)	515
RsaI	GTAC	2 cut(s)	33, 919
RsaNI	GTAC	2 cut(s)	32, 918
RseI	CAYNNNNRTG	3 cut(s)	753, 969, 1164
SapI	GCTCTTC	1 cut(s)	975
SaqAI	TTAA	8 cut(s)	267, 303, 569, 869, 882, 1058, 1175, 1194
SatI	GCNGC	5 cut(s)	513, 531, 543, 1030, 1085
Sau3AI	GATC	8 cut(s)	313, 370, 460, 611, 664, 900, 943, 1237
SchI	GAGTC	4 cut(s)	257, 351, 394, 1238
SfaNI	GCATC	6 cut(s)	681, 760, 818, 998, 1174, 1307
SmiMI	CAYNNNNRTG	3 cut(s)	753, 969, 1164
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
SpeI	ACTAGT	1 cut(s)	752
SphI	GCATGC	1 cut(s)	1163
SsiI	CCGC	2 cut(s)	1307, 1390
SspI	AATATT	2 cut(s)	731, 1172
SspMI	CTAG	3 cut(s)	419, 753, 1395
StyI	CCWWGG	1 cut(s)	400
TaaI	ACNGT	4 cut(s)	31, 167, 767, 1430
TaiI	ACGT	3 cut(s)	682, 919, 1068
TfiI	GAWTC	5 cut(s)	779, 923, 1106, 1271, 1289
Tru1I	TTAA	8 cut(s)	267, 303, 569, 869, 882, 1058, 1175, 1194
Tru9I	TTAA	8 cut(s)	267, 303, 569, 869, 882, 1058, 1175, 1194
TscAI	CASTG	8 cut(s)	17, 772, 946, 1039, 1171, 1252, 1336, 1435
TseI	GCWGC	5 cut(s)	512, 530, 542, 1029, 1084
TspDTI	ATGAA	6 cut(s)	481, 726, 927, 1056, 1128, 1269
TspRI	CASTG	8 cut(s)	17, 772, 946, 1039, 1171, 1252, 1336, 1435
XapI	RAATTY	4 cut(s)	178, 590, 799, 1127
XceI	RCATGY	2 cut(s)	10, 1163
XspI	CTAG	3 cut(s)	419, 753, 1395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.