pycom17g01970

CRS1_YhbY

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Reverse (-)
1244854 .. 1247761
2908 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g01970.3

Sequence Viewer

Length: 2019 bp
ATGTTCGCTGCGAGGAAGCTCAACAGCCACAGCTTCAAGTCCGCCTCTTCTCTCCTCCAATTCAATCCCTCCAAAAATGCCTTGTTAAGAGATGTCTCGGCGAAGGTTTTATCAAGCAATGTACTTCAGCCAAGTAAGCCGAGTGACGATTGTTTCTCTTCTTCATCGAGACCAGCCAATCCCTTCGATGGGTGGTCTAGATCGATCCCGACATCTAGAGGGAGTAGTAGCATGAGGAGCAAAGTCGCTAAGCGGATGCAAAAGGAGTCTGGTAAGACTCTAAGAGAGGTTCGCAGGGCGAAAAAGCTTCAAAAGAAGCTGATGACCGAAAATGAGAGGCTCATTTACAACCTCAAAAGAGCCAAGAGGAAAGTAGCATTACTGCTACAAAAGCTGAAAAAGTACGAGCTTCCAGATCTGCCCTCACCCCGTCATGATCCTGAGCTAGTAACCCTCGAGCAGCTTCAGGCATTGAAGAAGATTGGCTTCAAAAATAAAAATTATGTTCCTGTCGGTGTTCGCGGGGTCTTTGGAGGAGTTGTCCAGAATATGCATCTACACTGGAAGTTTCACGAGACTGTACAAGTTTGCTGTGATAACTTCCCCAAAGAAAAGATCAAGGAAATGGCCTCTATGATTGCGAGACTGAGTGGTGGTATAGTGGTAAACATACACAATACTAAAACAATCATCATGTTTCGCGGAAGAAATTACCGGCAGCCCAAAAATTTAATACCTTTCAATACCCTTACAAAAAGGAAGGCATTATTCAAGGCAAGATTTGAACAAGCCCTCGAATCTCAGAAGCTAAACATAAAGAAGATAGAACAGCAGCTCCGCCAAAGTGGTATTAATCCTGAGGATCCAGTTGCCATTGCAAGCATCCAGAGAGTAGCTTCCTCGTTCTTTAATGCATTTGATCAGAAGGACGGAAGTCCTTATGTCTTCCATGGGGACAAACCGTCTGTAGCAGAGCCTGATAATAAATTTAAACATCCAGAGCCTCCTGATGAGGAAGAGGAGGAGGAGTTGGACAAATTCATAGCTGAAATTGAGGATGCAGCGGAACGAGAGTGGGCTGCGGAGGAAGCAGCTGAGAAAGAGGAGTTCACCAGAATGAGGTATTGGAACAGAGAGGAGTACGGTGGGAGATACAGAAGATCTGAAGAACCTGAACATGACAATTCTGATGATGAGATCCCGAGGGCAAGGGATTGGAGGCATACACATGGCAAGCAGAGGCCTAATGGTGATTACGAAGATGACGATGAGGAATGGCTTTCTAGTAATGTTGTGGGCTCTAGTGTTCTCGACAGTGATGCTGATGATTCTGATGGAACGCCTGAGAAGTTCAAGATATCTCCAAGAGACTGGGGGAGGCAGGATAAGATTGGCAGGGCGAAGAATGATGAATGCTTTTATAGAAATTCTGAAGCTAACAATAGAAAAGCTAATAATAGAAAGATTATGGTGGACGATGGCACTGAATCAGAAAATGTGCTGAGCGATCTTGATACTGCAATGTGGAAATTCAATTCTGAGGAAGAGCACGACTCAACAGCATCAAGAGCTGCGAACTATGATTTCCGAAGTAGCAGTGATGAAGAAGAGGACTTAACATACACAAAGGGAGGAAAGGAGTGGGTAAATGATTCCGAAAGCAACACTGTTTATTCCAACAAAGCTCGTGGCAAGTTTGAGGCATCAAGAGTTGCAGAGGGGAAACACGATAGGAGGATTGGCAGGGGCAACAGTGAGTATTTCAAAAGAAATGCTGATGTTAGCACAAGAAGAAAGCCGGTTGAGGAGGATGTCAAGTCCAAGGATATCTCCGGTGATTCTGAAAACGAAATATGGGAATTAAACGCTGCCAGCGACTCTGGAGCATCGACAGGGAGAATCAATTACAACAGCAGCGACGAAGAGGATTATCAAGTGAGGAGGGAAGAGAAGAAAGGAAATGGCAATAAAAGCACAAGAACAAGAAAAGACTTGGATGAGGATTGGGACAGTGATTAG

Protein Analysis

673

Amino Acids

77.13

Weight (kDa)

6.73

Isoelectric Point (pI)

53.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011191)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 522, 702
AciI CCGC 7 cut(s) 42, 253, 522, 702, 838, 1064, 1082
AclWI GGATC 5 cut(s) 199, 431, 857, 870, 1192
AcsI RAATTY 5 cut(s) 727, 986, 1037, 1426, 1529
AcuI CTGAAG 4 cut(s) 110, 449, 1185, 1452
AfaI GTAC 4 cut(s) 123, 404, 582, 1142
AfiI CCNNNNNNNGG 3 cut(s) 188, 189, 1119
AhdI GACNNNNNGTC 1 cut(s) 961
AjuI GAANNNNNNNTTGG 2 cut(s) 1108, 1140
AloI GAACNNNNNNTCC 2 cut(s) 819, 851
Alw21I GWGCWC 1 cut(s) 1551
Alw26I GTCTC 5 cut(s) 100, 163, 569, 637, 1362
AlwI GGATC 5 cut(s) 199, 431, 857, 870, 1192
AlwNI CAGNNNCTG 1 cut(s) 977
Ama87I CYCGRG 2 cut(s) 455, 1201
AoxI GGCC 2 cut(s) 627, 1241
ApoI RAATTY 5 cut(s) 727, 986, 1037, 1426, 1529
AseI ATTAAT 1 cut(s) 852
AsuHPI GGTGA 4 cut(s) 417, 1102, 1262, 1847
AvaI CYCGRG 2 cut(s) 455, 1201
AxyI CCTNAGG 1 cut(s) 858
BamHI GGATCC 1 cut(s) 862
BanII GRGCYC 1 cut(s) 1301
BauI CACGAG 2 cut(s) 572, 1686
BbsI GAAGAC 1 cut(s) 937
Bbv12I GWGCWC 1 cut(s) 1551
BbvI GCAGC 9 cut(s) 472, 730, 844, 1066, 1073, 1103, 1558, 1855, 1926
BccI CCATC 3 cut(s) 182, 1328, 1472
BcgI CGANNNNNNTGC 2 cut(s) 1301, 1335
BclI TGATCA 1 cut(s) 919
BcoDI GTCTC 5 cut(s) 100, 163, 569, 637, 1362
BfaI CTAG 5 cut(s) 198, 216, 446, 1284, 1302
BfmI CTRYAG 1 cut(s) 966
BglII AGATCT 2 cut(s) 415, 1160
BlpI GCTNAGC 2 cut(s) 249, 1502
BmeRI GACNNNNNGTC 1 cut(s) 961
BmeT110I CYCGRG 2 cut(s) 455, 1201
BmiI GGNNCC 1 cut(s) 864
BmrI ACTGGG 1 cut(s) 1381
BmsI GCATC 8 cut(s) 246, 562, 891, 1048, 1309, 1571, 1712, 1895
BmuI ACTGGG 1 cut(s) 1381
BoxI GACNNNNGTC 1 cut(s) 933
BpiI GAAGAC 1 cut(s) 937
BplI GAGNNNNNCTC 2 cut(s) 1538, 1570
BpmI CTGGAG 1 cut(s) 1902
Bpu10I CCTNAGC 1 cut(s) 441
Bpu1102I GCTNAGC 2 cut(s) 249, 1502
Bsa29I ATCGAT 1 cut(s) 203
BsaI GGTCTC 1 cut(s) 163
BsaJI CCNNGG 3 cut(s) 949, 1202, 1821
BsaWI WCCGGW 1 cut(s) 1832
BsaXI ACNNNNNCTCC 6 cut(s) 525, 555, 819, 849, 1013, 1043
Bsc4I CCNNNNNNNGG 3 cut(s) 188, 189, 1119
Bse118I RCCGGY 2 cut(s) 714, 1798
Bse1I ACTGG 3 cut(s) 566, 866, 1376
Bse21I CCTNAGG 1 cut(s) 858
Bse3DI GCAATG 3 cut(s) 124, 873, 1527
BseCI ATCGAT 1 cut(s) 203
BseDI CCNNGG 3 cut(s) 949, 1202, 1821
BseGI GGATG 6 cut(s) 261, 882, 994, 1063, 1816, 2002
BseLI CCNNNNNNNGG 3 cut(s) 188, 189, 1119
BseMI GCAATG 3 cut(s) 124, 873, 1527
BseMII CTCAG 8 cut(s) 432, 638, 815, 849, 1086, 1335, 1493, 1530
BseNI ACTGG 3 cut(s) 566, 866, 1376
BseXI GCAGC 9 cut(s) 472, 730, 844, 1066, 1073, 1103, 1558, 1855, 1926
Bsh1236I CGCG 2 cut(s) 522, 702
BshFI GGCC 2 cut(s) 629, 1243
BshVI ATCGAT 1 cut(s) 203
BsiHKAI GWGCWC 1 cut(s) 1551
BsiHKCI CYCGRG 2 cut(s) 455, 1201
BsiSI CCGG 3 cut(s) 715, 1799, 1833
BslFI GGGAC 1 cut(s) 968
BslI CCNNNNNNNGG 3 cut(s) 188, 189, 1119
BsmAI GTCTC 5 cut(s) 100, 163, 569, 637, 1362
BsmFI GGGAC 1 cut(s) 968
BsmI GAATGC 1 cut(s) 1418
BsnI GGCC 2 cut(s) 629, 1243
Bso31I GGTCTC 1 cut(s) 163
BsoBI CYCGRG 2 cut(s) 455, 1201
Bsp1286I GDGCHC 2 cut(s) 1301, 1551
Bsp1407I TGTACA 1 cut(s) 580
Bsp1720I GCTNAGC 2 cut(s) 249, 1502
Bsp19I CCATGG 1 cut(s) 949
BspACI CCGC 7 cut(s) 42, 253, 522, 702, 838, 1064, 1082
BspANI GGCC 2 cut(s) 629, 1243
BspCNI CTCAG 8 cut(s) 433, 639, 814, 850, 1087, 1336, 1494, 1531
BspDI ATCGAT 1 cut(s) 203
BspFNI CGCG 2 cut(s) 522, 702
BspHI TCATGA 1 cut(s) 433
BspLI GGNNCC 1 cut(s) 864
BspPI GGATC 5 cut(s) 199, 431, 857, 870, 1192
BspQI GCTCTTC 1 cut(s) 1539
BspTNI GGTCTC 1 cut(s) 163
BsrDI GCAATG 3 cut(s) 124, 873, 1527
BsrFI RCCGGY 2 cut(s) 714, 1798
BsrGI TGTACA 1 cut(s) 580
BsrI ACTGG 3 cut(s) 566, 866, 1376
BssAI RCCGGY 2 cut(s) 714, 1798
BssECI CCNNGG 3 cut(s) 949, 1202, 1821
BssSI CACGAG 2 cut(s) 572, 1686
BssT1I CCWWGG 2 cut(s) 949, 1821
Bst2BI CACGAG 2 cut(s) 572, 1686
Bst4CI ACNGT 7 cut(s) 580, 963, 1145, 1316, 1669, 1754, 2012
Bst6I CTCTTC 7 cut(s) 52, 163, 1011, 1539, 1602, 1917, 1941
BstAUI TGTACA 1 cut(s) 580
BstC8I GCNNGC 3 cut(s) 880, 1235, 1873
BstDSI CCRYGG 1 cut(s) 949
BstF5I GGATG 6 cut(s) 261, 882, 994, 1063, 1816, 2002
BstFNI CGCG 2 cut(s) 522, 702
BstMAI GTCTC 5 cut(s) 100, 163, 569, 637, 1362
BstMWI GCNNNNNNNGC 6 cut(s) 136, 237, 391, 1088, 1568, 1971
BstPAI GACNNNNGTC 1 cut(s) 933
BstSFI CTRYAG 1 cut(s) 966
BstUI CGCG 2 cut(s) 522, 702
BstV1I GCAGC 9 cut(s) 472, 730, 844, 1066, 1073, 1103, 1558, 1855, 1926
BstV2I GAAGAC 1 cut(s) 937
BstX2I RGATCY 4 cut(s) 415, 862, 1160, 1197
BstXI CCANNNNNNTGG 1 cut(s) 1371
BstYI RGATCY 4 cut(s) 415, 862, 1160, 1197
Bsu15I ATCGAT 1 cut(s) 203
Bsu36I CCTNAGG 1 cut(s) 858
BsuRI GGCC 2 cut(s) 629, 1243
BsuTUI ATCGAT 1 cut(s) 203
BtgI CCRYGG 1 cut(s) 949
BtsCI GGATG 6 cut(s) 261, 882, 994, 1063, 1816, 2002
BtsI GCAGTG 1 cut(s) 1603
BtsIMutI CAGTG 7 cut(s) 559, 1321, 1482, 1603, 1665, 1759, 2017
Cac8I GCNNGC 3 cut(s) 880, 1235, 1873
CaiI CAGNNNCTG 1 cut(s) 977
CciI TCATGA 1 cut(s) 433
Cfr10I RCCGGY 2 cut(s) 714, 1798
ClaI ATCGAT 1 cut(s) 203
Csp6I GTAC 4 cut(s) 122, 403, 581, 1141
CspCI CAANNNNNGTGG 2 cut(s) 1669, 1704
CviAII CATG 6 cut(s) 232, 434, 694, 950, 1178, 1229
CviQI GTAC 4 cut(s) 122, 403, 581, 1141
DraI TTTAAA 1 cut(s) 991
DriI GACNNNNNGTC 1 cut(s) 961
Eam1104I CTCTTC 7 cut(s) 52, 163, 1011, 1539, 1602, 1917, 1941
Eam1105I GACNNNNNGTC 1 cut(s) 961
EarI CTCTTC 7 cut(s) 52, 163, 1011, 1539, 1602, 1917, 1941
EciI GGCGGA 2 cut(s) 31, 827
Eco130I CCWWGG 2 cut(s) 949, 1821
Eco147I AGGCCT 1 cut(s) 1243
Eco24I GRGCYC 1 cut(s) 1301
Eco31I GGTCTC 1 cut(s) 163
Eco32I GATATC 2 cut(s) 1359, 1828
Eco57I CTGAAG 4 cut(s) 110, 449, 1185, 1452
Eco81I CCTNAGG 1 cut(s) 858
Eco88I CYCGRG 2 cut(s) 455, 1201
EcoRV GATATC 2 cut(s) 1359, 1828
EcoT14I CCWWGG 2 cut(s) 949, 1821
EcoT22I ATGCAT 2 cut(s) 555, 916
EcoT38I GRGCYC 1 cut(s) 1301
ErhI CCWWGG 2 cut(s) 949, 1821
FaeI CATG 6 cut(s) 235, 437, 697, 953, 1181, 1232
FalI AAGNNNNNCTT 2 cut(s) 470, 502
FaqI GGGAC 1 cut(s) 968
FatI CATG 6 cut(s) 231, 433, 693, 949, 1177, 1228
FauI CCCGC 1 cut(s) 515
FbaI TGATCA 1 cut(s) 919
FokI GGATG 6 cut(s) 268, 869, 981, 1070, 1823, 2009
FriOI GRGCYC 1 cut(s) 1301
FspBI CTAG 5 cut(s) 198, 216, 446, 1284, 1302
GsuI CTGGAG 1 cut(s) 1902
HaeIII GGCC 2 cut(s) 629, 1243
HapII CCGG 3 cut(s) 715, 1799, 1833
Hin1II CATG 6 cut(s) 235, 437, 697, 953, 1181, 1232
HindIII AAGCTT 1 cut(s) 305
HpaII CCGG 3 cut(s) 715, 1799, 1833
HphI GGTGA 4 cut(s) 417, 1102, 1262, 1847
Hpy166II GTNNAC 3 cut(s) 667, 1110, 1474
Hpy8I GTNNAC 3 cut(s) 667, 1110, 1474
Hpy99I CGWCG 1 cut(s) 1922
HpyAV CCTTC 4 cut(s) 97, 193, 754, 919
HpyCH4III ACNGT 7 cut(s) 580, 963, 1145, 1316, 1669, 1754, 2012
HpyCH4V TGCA 7 cut(s) 259, 553, 878, 914, 1061, 1520, 1715
HpyF10VI GCNNNNNNNGC 6 cut(s) 136, 237, 391, 1088, 1568, 1971
Hsp92II CATG 6 cut(s) 235, 437, 697, 953, 1181, 1232
Ksp22I TGATCA 1 cut(s) 919
LguI GCTCTTC 1 cut(s) 1539
LmnI GCTCC 3 cut(s) 237, 840, 1883
Lsp1109I GCAGC 9 cut(s) 472, 730, 844, 1066, 1073, 1103, 1558, 1855, 1926
LweI GCATC 8 cut(s) 246, 562, 891, 1048, 1309, 1571, 1712, 1895
MaeI CTAG 5 cut(s) 198, 216, 446, 1284, 1302
MaeIII GTNAC 2 cut(s) 143, 448
MflI RGATCY 4 cut(s) 415, 862, 1160, 1197
MhlI GDGCHC 2 cut(s) 1301, 1551
MlyI GAGTC 4 cut(s) 271, 275, 1547, 1871
MmeI TCCRAC 2 cut(s) 1011, 1701
Mph1103I ATGCAT 2 cut(s) 555, 916
MseI TTAA 7 cut(s) 86, 731, 852, 909, 990, 1616, 1862
MslI CAYNNNNRTG 2 cut(s) 1115, 1227
MspA1I CMGCKG 2 cut(s) 1064, 1094
MspI CCGG 3 cut(s) 715, 1799, 1833
Mva1269I GAATGC 1 cut(s) 1418
MvnI CGCG 2 cut(s) 522, 702
MwoI GCNNNNNNNGC 6 cut(s) 136, 237, 391, 1088, 1568, 1971
NcoI CCATGG 1 cut(s) 949
NlaIII CATG 6 cut(s) 235, 437, 697, 953, 1181, 1232
NlaIV GGNNCC 1 cut(s) 864
NmeAIII GCCGAG 2 cut(s) 77, 165
NmuCI GTSAC 1 cut(s) 143
NsiI ATGCAT 2 cut(s) 555, 916
PaeR7I CTCGAG 1 cut(s) 455
PagI TCATGA 1 cut(s) 433
PceI AGGCCT 1 cut(s) 1243
PciSI GCTCTTC 1 cut(s) 1539
PcsI WCGNNNNNNNCGW 2 cut(s) 1263, 1872
PctI GAATGC 1 cut(s) 1418
PfeI GAWTC 6 cut(s) 797, 1328, 1487, 1652, 1838, 1899
PleI GAGTC 4 cut(s) 271, 274, 1547, 1871
PpsI GAGTC 4 cut(s) 271, 274, 1547, 1871
PshAI GACNNNNGTC 1 cut(s) 933
PshBI ATTAAT 1 cut(s) 852
PspN4I GGNNCC 1 cut(s) 864
PspXI VCTCGAGB 1 cut(s) 455
PstNI CAGNNNCTG 1 cut(s) 977
PsuI RGATCY 4 cut(s) 415, 862, 1160, 1197
PvuII CAGCTG 1 cut(s) 1094
RsaI GTAC 4 cut(s) 123, 404, 582, 1142
RsaNI GTAC 4 cut(s) 122, 403, 581, 1141
RseI CAYNNNNRTG 2 cut(s) 1115, 1227
SapI GCTCTTC 1 cut(s) 1539
SaqAI TTAA 7 cut(s) 86, 731, 852, 909, 990, 1616, 1862
SchI GAGTC 4 cut(s) 271, 275, 1547, 1871
SduI GDGCHC 2 cut(s) 1301, 1551
SfaNI GCATC 8 cut(s) 246, 562, 891, 1048, 1309, 1571, 1712, 1895
SfcI CTRYAG 1 cut(s) 966
Sfr274I CTCGAG 1 cut(s) 455
SlaI CTCGAG 1 cut(s) 455
SmiMI CAYNNNNRTG 2 cut(s) 1115, 1227
SmlI CTYRAG 1 cut(s) 455
SmoI CTYRAG 1 cut(s) 455
SseBI AGGCCT 1 cut(s) 1243
SsiI CCGC 7 cut(s) 42, 253, 522, 702, 838, 1064, 1082
SspMI CTAG 5 cut(s) 198, 216, 446, 1284, 1302
StuI AGGCCT 1 cut(s) 1243
StyI CCWWGG 2 cut(s) 949, 1821
TaaI ACNGT 7 cut(s) 580, 963, 1145, 1316, 1669, 1754, 2012
TaqI TCGA 7 cut(s) 167, 186, 203, 456, 795, 1311, 1889
TaqII GACCGA 1 cut(s) 341
TatI WGTACW 2 cut(s) 121, 580
TfiI GAWTC 6 cut(s) 797, 1328, 1487, 1652, 1838, 1899
Tru1I TTAA 7 cut(s) 86, 731, 852, 909, 990, 1616, 1862
Tru9I TTAA 7 cut(s) 86, 731, 852, 909, 990, 1616, 1862
TscAI CASTG 7 cut(s) 566, 1321, 1489, 1603, 1672, 1759, 2017
TseFI GTSAC 1 cut(s) 143
Tsp45I GTSAC 1 cut(s) 143
TspDTI ATGAA 4 cut(s) 153, 1030, 1425, 1617
TspGWI ACGGA 1 cut(s) 945
TspRI CASTG 7 cut(s) 566, 1321, 1489, 1603, 1672, 1759, 2017
VspI ATTAAT 1 cut(s) 852
XapI RAATTY 5 cut(s) 727, 986, 1037, 1426, 1529
XbaI TCTAGA 2 cut(s) 197, 215
XhoI CTCGAG 1 cut(s) 455
XspI CTAG 5 cut(s) 198, 216, 446, 1284, 1302
Zsp2I ATGCAT 2 cut(s) 555, 916
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.