Rmu_sc0000860.1_g000003

CRS1_YhbY

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000860.1
Physical Location & Seq
Forward (+)
19742 .. 23315
3574 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000860.1_g000003.1.cds

Sequence Viewer

Length: 1692 bp
atgttcgctacgaggagcctccgcagacattgcttcaagtccctatcttctctcctccaattcaatccctccaagaatgtctcgtctttaggagatgtcggtcctaaactgatctcgagcaatgtggttcggcatagtagtgctagtggagactgtgttttttcttcatcttcaccattccatcccttggatgggtggtcccggccaatgtccacatatagggggtcgccgtcatctagaggttcagcatctaaagggaggggcatgagaagcaaagtagcgaggcgggtggaaaaggagactggtaaaactcaaaaagaggttcagagggcaaataagattcgaaagaagctgatgactgaaaacgagaggcgcatttacaacctgaaaagggccaagagaaaagtggcattgctactacagaagctcaaaaaatatgagcttccagatctgccagctccccgacatgatccggagctgtttaccctagagcagcttcaagcatttaagaagattggcttcagaaacaaaaactatgttcctgttggtgttcgtggggtctttggaggagttgtccagaatatgcacatgcactggaagtttcacgagaccgtacaagtttgttgtgataacttccctaaggagaaaatcaaggaaatggcaacaatgcttgcaaggctgagtggtggtattgtgatcaatatacataatacaaaaacaatcatcatgtttcgtggaagaaattaccgtcagcctaaaaatttgatacctttcaatacccttacgaaaaggaaggcattattcaaggccagatttgaacaagctcttgagtcgcagaagctaaacattaagaagatagaacaggagctacgcagaagtggtgttaatcctgaggatccagttgctatggctagtatccagagagtcgcctcctcattcttcaatgcaattgatcagaaggaggggagtccttatgtattccatggggataagctgtcactagcagagactgataacaaattgagacatttagaacctcctgatcaaaatgagcaggaggagttagacaagttcatctctgagattgaaaatgcagctgaacgcgagtgggctgctgaggaagcagcagagaaagaagagtttacccgattaaggtattggaacaaagaagaatttggggggagatacagaagatctgaaccacttgaaaatgacagctctgatgatgagacaaaaaggacaagggatcggagggatacacgtggcaagcagatgcctgttgatagtgattatgaagatgacgagggggaatattctaatagtgtcgcgcatactagtgtttttgacagtgatgctgatgattctgatggaatgcaagagaatttcaaggcatctacaattgacagggggaagcatgccagtgaatatttaaaaggagatgctgattttaacataagaagagagttggttgaagaagacttggagtcggacgatctgttcagtgatgatgaaactgcaatgtgggaatcagaggcggtgaaagattcacgggcatcaactgcgggaaaatacaattacaggagcagtgaaaaagaggattatccagtaagaagagaagagaagggcaacggggatgatgtcaagcggacaaggacgccaaaagagttggatgagatttgggacagtgattag

Protein Analysis

563

Amino Acids

64.8

Weight (kDa)

8.53

Isoelectric Point (pI)

56.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011191)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 187
AccII CGCG 2 cut(s) 1104, 1328
AccIII TCCGGA 1 cut(s) 472
AciI CCGC 5 cut(s) 22, 286, 1535, 1562, 1645
AclWI GGATC 4 cut(s) 464, 890, 903, 1254
AcoI YGGCCR 1 cut(s) 203
AcsI RAATTY 3 cut(s) 760, 1172, 1381
AcuI CTGAAG 1 cut(s) 505
AcvI CACGTG 1 cut(s) 1262
AcyI GRCGYC 1 cut(s) 1655
AfaI GTAC 1 cut(s) 615
AfiI CCNNNNNNNGG 6 cut(s) 187, 191, 192, 219, 391, 1152
AflIII ACRYGT 1 cut(s) 1259
AhdI GACNNNNNGTC 1 cut(s) 1483
AhlI ACTAGT 1 cut(s) 1334
AloI GAACNNNNNNTCC 2 cut(s) 1481, 1513
Alw26I GTCTC 7 cut(s) 85, 144, 293, 602, 1001, 1018, 1223
AlwI GGATC 4 cut(s) 464, 890, 903, 1254
AlwNI CAGNNNCTG 1 cut(s) 1010
Ama87I CYCGRG 1 cut(s) 115
Aor13HI TCCGGA 1 cut(s) 472
AoxI GGCC 3 cut(s) 203, 393, 807
ApeKI GCWGC 4 cut(s) 493, 1094, 1112, 1124
ApoI RAATTY 3 cut(s) 760, 1172, 1381
AspLEI GCGC 2 cut(s) 375, 1330
AspS9I GGNCC 3 cut(s) 101, 198, 393
AsuC2I CCSGG 1 cut(s) 202
AsuHPI GGTGA 2 cut(s) 165, 1549
AsuII TTCGAA 1 cut(s) 343
AvaI CYCGRG 1 cut(s) 115
AvaII GGWCC 2 cut(s) 101, 198
AxyI CCTNAGG 2 cut(s) 639, 891
BamHI GGATCC 1 cut(s) 895
BauI CACGAG 1 cut(s) 605
BbrPI CACGTG 1 cut(s) 1262
BbsI GAAGAC 1 cut(s) 1482
BbvCI CCTCAGC 1 cut(s) 1116
BbvI GCAGC 4 cut(s) 505, 1099, 1106, 1136
BccI CCATC 3 cut(s) 185, 189, 1361
BceAI ACGGC 1 cut(s) 214
BcgI CGANNNNNNTGC 2 cut(s) 1094, 1128
BciVI GTATCC 2 cut(s) 926, 1249
BclI TGATCA 3 cut(s) 696, 952, 1042
BcnI CCSGG 1 cut(s) 202
BcoDI GTCTC 7 cut(s) 85, 144, 293, 602, 1001, 1018, 1223
BcuI ACTAGT 1 cut(s) 1334
BfaI CTAG 6 cut(s) 144, 237, 488, 912, 1001, 1335
BfmI CTRYAG 1 cut(s) 419
BfuI GTATCC 2 cut(s) 926, 1249
BglII AGATCT 2 cut(s) 448, 1193
BisI GCNGC 4 cut(s) 494, 1095, 1113, 1125
BlsI GCNGC 4 cut(s) 495, 1096, 1114, 1126
Bme1390I CCNGG 1 cut(s) 202
Bme18I GGWCC 2 cut(s) 101, 198
BmeRI GACNNNNNGTC 1 cut(s) 1483
BmeT110I CYCGRG 1 cut(s) 115
BmgT120I GGNCC 3 cut(s) 101, 198, 393
BmiI GGNNCC 3 cut(s) 17, 200, 897
BmrFI CCNGG 1 cut(s) 202
BmsI GCATC 6 cut(s) 257, 1263, 1342, 1400, 1429, 1562
BpiI GAAGAC 1 cut(s) 1482
Bpu10I CCTNAGC 1 cut(s) 1116
Bpu14I TTCGAA 1 cut(s) 343
BpuEI CTTGAG 1 cut(s) 848
BpuMI CCSGG 1 cut(s) 202
BsaAI YACGTR 1 cut(s) 1262
BsaHI GRCGYC 1 cut(s) 1655
BsaI GGTCTC 1 cut(s) 602
BsaJI CCNNGG 2 cut(s) 186, 982
BsaWI WCCGGW 1 cut(s) 472
BsaXI ACNNNNNCTCC 4 cut(s) 141, 171, 558, 588
Bsc4I CCNNNNNNNGG 6 cut(s) 187, 191, 192, 219, 391, 1152
Bse1I ACTGG 5 cut(s) 307, 599, 899, 1419, 1604
Bse21I CCTNAGG 2 cut(s) 639, 891
Bse3DI GCAATG 4 cut(s) 28, 127, 410, 1524
BseAI TCCGGA 1 cut(s) 472
BseDI CCNNGG 2 cut(s) 186, 982
BseGI GGATG 4 cut(s) 181, 196, 1639, 1675
BseLI CCNNNNNNNGG 6 cut(s) 187, 191, 192, 219, 391, 1152
BseMI GCAATG 4 cut(s) 28, 127, 410, 1524
BseMII CTCAG 4 cut(s) 671, 882, 1071, 1107
BseNI ACTGG 5 cut(s) 307, 599, 899, 1419, 1604
BseRI GAGGAG 5 cut(s) 28, 44, 582, 922, 1073
BseXI GCAGC 4 cut(s) 505, 1099, 1106, 1136
Bsh1236I CGCG 2 cut(s) 1104, 1328
BshFI GGCC 3 cut(s) 205, 395, 809
BsiHKCI CYCGRG 1 cut(s) 115
BsiSI CCGG 2 cut(s) 202, 473
BslFI GGGAC 2 cut(s) 25, 184
BslI CCNNNNNNNGG 6 cut(s) 187, 191, 192, 219, 391, 1152
BsmAI GTCTC 7 cut(s) 85, 144, 293, 602, 1001, 1018, 1223
BsmFI GGGAC 2 cut(s) 25, 184
BsmI GAATGC 1 cut(s) 1377
BsnI GGCC 3 cut(s) 205, 395, 809
Bso31I GGTCTC 1 cut(s) 602
BsoBI CYCGRG 1 cut(s) 115
Bsp119I TTCGAA 1 cut(s) 343
Bsp13I TCCGGA 1 cut(s) 472
Bsp19I CCATGG 1 cut(s) 982
BspACI CCGC 5 cut(s) 22, 286, 1535, 1562, 1645
BspANI GGCC 3 cut(s) 205, 395, 809
BspCNI CTCAG 4 cut(s) 672, 883, 1072, 1108
BspEI TCCGGA 1 cut(s) 472
BspFNI CGCG 2 cut(s) 1104, 1328
BspLI GGNNCC 3 cut(s) 17, 200, 897
BspPI GGATC 4 cut(s) 464, 890, 903, 1254
BspT104I TTCGAA 1 cut(s) 343
BspTNI GGTCTC 1 cut(s) 602
BsrDI GCAATG 4 cut(s) 28, 127, 410, 1524
BsrI ACTGG 5 cut(s) 307, 599, 899, 1419, 1604
BssECI CCNNGG 2 cut(s) 186, 982
BssNI GRCGYC 1 cut(s) 1655
BssSI CACGAG 1 cut(s) 605
BssT1I CCWWGG 2 cut(s) 186, 982
Bst2BI CACGAG 1 cut(s) 605
Bst4CI ACNGT 5 cut(s) 155, 613, 749, 1349, 1685
Bst6I CTCTTC 4 cut(s) 1131, 1453, 1606, 1611
BstACI GRCGYC 1 cut(s) 1655
BstAPI GCANNNNNTGC 2 cut(s) 30, 1559
BstBAI YACGTR 1 cut(s) 1262
BstBI TTCGAA 1 cut(s) 343
BstC8I GCNNGC 4 cut(s) 456, 672, 1268, 1416
BstDEI CTNAG 5 cut(s) 639, 680, 891, 1080, 1116
BstDSI CCRYGG 1 cut(s) 982
BstF5I GGATG 4 cut(s) 181, 196, 1639, 1675
BstFNI CGCG 2 cut(s) 1104, 1328
BstHHI GCGC 2 cut(s) 375, 1330
BstMAI GTCTC 7 cut(s) 85, 144, 293, 602, 1001, 1018, 1223
BstMWI GCNNNNNNNGC 5 cut(s) 30, 270, 676, 1121, 1559
BstNSI RCATGY 2 cut(s) 592, 1418
BstSCI CCNGG 1 cut(s) 200
BstSFI CTRYAG 1 cut(s) 419
BstUI CGCG 2 cut(s) 1104, 1328
BstV1I GCAGC 4 cut(s) 505, 1099, 1106, 1136
BstV2I GAAGAC 1 cut(s) 1482
BstX2I RGATCY 3 cut(s) 448, 895, 1193
BstYI RGATCY 3 cut(s) 448, 895, 1193
Bsu36I CCTNAGG 2 cut(s) 639, 891
BsuI GTATCC 2 cut(s) 926, 1249
BsuRI GGCC 3 cut(s) 205, 395, 809
BtgI CCRYGG 1 cut(s) 982
BtsCI GGATG 4 cut(s) 181, 196, 1639, 1675
BtsI GCAGTG 1 cut(s) 1591
BtsIMutI CAGTG 6 cut(s) 592, 1354, 1426, 1507, 1591, 1690
Cac8I GCNNGC 4 cut(s) 456, 672, 1268, 1416
CaiI CAGNNNCTG 1 cut(s) 1010
CfoI GCGC 2 cut(s) 375, 1330
Cfr13I GGNCC 3 cut(s) 101, 198, 393
CseI GACGC 1 cut(s) 1663
Csp6I GTAC 1 cut(s) 614
CviAII CATG 6 cut(s) 265, 467, 589, 727, 983, 1415
CviQI GTAC 1 cut(s) 614
DdeI CTNAG 5 cut(s) 639, 680, 891, 1080, 1116
DraI TTTAAA 1 cut(s) 1431
DriI GACNNNNNGTC 1 cut(s) 1483
EaeI YGGCCR 1 cut(s) 203
Eam1104I CTCTTC 4 cut(s) 1131, 1453, 1606, 1611
Eam1105I GACNNNNNGTC 1 cut(s) 1483
EarI CTCTTC 4 cut(s) 1131, 1453, 1606, 1611
Eco130I CCWWGG 2 cut(s) 186, 982
Eco31I GGTCTC 1 cut(s) 602
Eco47I GGWCC 2 cut(s) 101, 198
Eco57I CTGAAG 1 cut(s) 505
Eco72I CACGTG 1 cut(s) 1262
Eco81I CCTNAGG 2 cut(s) 639, 891
Eco88I CYCGRG 1 cut(s) 115
EcoT14I CCWWGG 2 cut(s) 186, 982
ErhI CCWWGG 2 cut(s) 186, 982
FaeI CATG 6 cut(s) 268, 470, 592, 730, 986, 1418
FalI AAGNNNNNCTT 2 cut(s) 503, 535
FaqI GGGAC 2 cut(s) 25, 184
FatI CATG 6 cut(s) 264, 466, 588, 726, 982, 1414
FauI CCCGC 2 cut(s) 279, 1555
FbaI TGATCA 3 cut(s) 696, 952, 1042
Fnu4HI GCNGC 4 cut(s) 494, 1095, 1113, 1125
FokI GGATG 4 cut(s) 168, 203, 1646, 1682
Fsp4HI GCNGC 4 cut(s) 494, 1095, 1113, 1125
FspBI CTAG 6 cut(s) 144, 237, 488, 912, 1001, 1335
GlaI GCGC 2 cut(s) 374, 1329
GluI GCNGC 4 cut(s) 494, 1095, 1113, 1125
HaeIII GGCC 3 cut(s) 205, 395, 809
HapII CCGG 2 cut(s) 202, 473
HgaI GACGC 1 cut(s) 1663
HhaI GCGC 2 cut(s) 375, 1330
Hin1I GRCGYC 1 cut(s) 1655
Hin1II CATG 6 cut(s) 268, 470, 592, 730, 986, 1418
Hin6I GCGC 2 cut(s) 373, 1328
HinP1I GCGC 2 cut(s) 373, 1328
HinfI GANTC 8 cut(s) 340, 830, 924, 967, 1361, 1484, 1526, 1544
HpaII CCGG 2 cut(s) 202, 473
HphI GGTGA 2 cut(s) 165, 1549
Hpy166II GTNNAC 3 cut(s) 213, 483, 1143
Hpy8I GTNNAC 3 cut(s) 213, 483, 1143
HpyAV CCTTC 3 cut(s) 787, 952, 1615
HpyCH4III ACNGT 5 cut(s) 155, 613, 749, 1349, 1685
HpyCH4IV ACGT 1 cut(s) 1261
HpyCH4V TGCA 7 cut(s) 586, 592, 674, 947, 1094, 1375, 1517
HpyF10VI GCNNNNNNNGC 5 cut(s) 30, 270, 676, 1121, 1559
HpyF3I CTNAG 5 cut(s) 639, 680, 891, 1080, 1116
HpySE526I ACGT 1 cut(s) 1261
Hsp92I GRCGYC 1 cut(s) 1655
Hsp92II CATG 6 cut(s) 268, 470, 592, 730, 986, 1418
HspAI GCGC 2 cut(s) 373, 1328
Kpn2I TCCGGA 1 cut(s) 472
Ksp22I TGATCA 3 cut(s) 696, 952, 1042
LmnI GCTCC 5 cut(s) 15, 463, 475, 865, 1581
Lsp1109I GCAGC 4 cut(s) 505, 1099, 1106, 1136
LweI GCATC 6 cut(s) 257, 1263, 1342, 1400, 1429, 1562
MaeI CTAG 6 cut(s) 144, 237, 488, 912, 1001, 1335
MaeII ACGT 1 cut(s) 1261
MaeIII GTNAC 1 cut(s) 996
MfeI CAATTG 2 cut(s) 948, 1398
MflI RGATCY 3 cut(s) 448, 895, 1193
MluCI AATT 9 cut(s) 59, 742, 760, 948, 1019, 1172, 1381, 1398, 1573
MlyI GAGTC 4 cut(s) 839, 933, 976, 1493
MmeI TCCRAC 2 cut(s) 1467, 1647
MroI TCCGGA 1 cut(s) 472
MseI TTAA 6 cut(s) 507, 849, 885, 1151, 1430, 1449
MslI CAYNNNNRTG 3 cut(s) 138, 1335, 1419
MspA1I CMGCKG 1 cut(s) 1097
MspI CCGG 2 cut(s) 202, 473
MspR9I CCNGG 1 cut(s) 202
MunI CAATTG 2 cut(s) 948, 1398
Mva1269I GAATGC 1 cut(s) 1377
MvnI CGCG 2 cut(s) 1104, 1328
MwoI GCNNNNNNNGC 5 cut(s) 30, 270, 676, 1121, 1559
NciI CCSGG 1 cut(s) 202
NcoI CCATGG 1 cut(s) 982
NlaIII CATG 6 cut(s) 268, 470, 592, 730, 986, 1418
NlaIV GGNNCC 3 cut(s) 17, 200, 897
NmuCI GTSAC 1 cut(s) 996
NspI RCATGY 2 cut(s) 592, 1418
NspV TTCGAA 1 cut(s) 343
PaeI GCATGC 1 cut(s) 1418
PaeR7I CTCGAG 1 cut(s) 115
PctI GAATGC 1 cut(s) 1377
PfeI GAWTC 4 cut(s) 340, 1361, 1526, 1544
PflMI CCANNNNNTGG 1 cut(s) 187
PkrI GCNGC 4 cut(s) 495, 1096, 1114, 1126
PleI GAGTC 4 cut(s) 838, 932, 975, 1492
PmaCI CACGTG 1 cut(s) 1262
PmlI CACGTG 1 cut(s) 1262
PpsI GAGTC 4 cut(s) 838, 932, 975, 1492
Ppu21I YACGTR 1 cut(s) 1262
PspCI CACGTG 1 cut(s) 1262
PspN4I GGNNCC 3 cut(s) 17, 200, 897
PspPI GGNCC 3 cut(s) 101, 198, 393
PsrI GAACNNNNNNTAC 2 cut(s) 852, 884
PstNI CAGNNNCTG 1 cut(s) 1010
PsuI RGATCY 3 cut(s) 448, 895, 1193
PvuII CAGCTG 1 cut(s) 1097
RsaI GTAC 1 cut(s) 615
RsaNI GTAC 1 cut(s) 614
RseI CAYNNNNRTG 3 cut(s) 138, 1335, 1419
SaqAI TTAA 6 cut(s) 507, 849, 885, 1151, 1430, 1449
SatI GCNGC 4 cut(s) 494, 1095, 1113, 1125
Sau96I GGNCC 3 cut(s) 101, 198, 393
SchI GAGTC 4 cut(s) 839, 933, 976, 1493
ScrFI CCNGG 1 cut(s) 202
SfaNI GCATC 6 cut(s) 257, 1263, 1342, 1400, 1429, 1562
SfcI CTRYAG 1 cut(s) 419
Sfr274I CTCGAG 1 cut(s) 115
SfuI TTCGAA 1 cut(s) 343
SinI GGWCC 2 cut(s) 101, 198
SlaI CTCGAG 1 cut(s) 115
SmiMI CAYNNNNRTG 3 cut(s) 138, 1335, 1419
SmlI CTYRAG 2 cut(s) 115, 827
SmoI CTYRAG 2 cut(s) 115, 827
SpeI ACTAGT 1 cut(s) 1334
SphI GCATGC 1 cut(s) 1418
Sse9I AATT 9 cut(s) 59, 742, 760, 948, 1019, 1172, 1381, 1398, 1573
SsiI CCGC 5 cut(s) 22, 286, 1535, 1562, 1645
SspI AATATT 2 cut(s) 1313, 1427
SspMI CTAG 6 cut(s) 144, 237, 488, 912, 1001, 1335
StyD4I CCNGG 1 cut(s) 200
StyI CCWWGG 2 cut(s) 186, 982
TaaI ACNGT 5 cut(s) 155, 613, 749, 1349, 1685
TaiI ACGT 1 cut(s) 1264
TaqI TCGA 2 cut(s) 116, 343
TaqII GACCGA 1 cut(s) 89
TasI AATT 9 cut(s) 59, 742, 760, 948, 1019, 1172, 1381, 1398, 1573
TfiI GAWTC 4 cut(s) 340, 1361, 1526, 1544
Tru1I TTAA 6 cut(s) 507, 849, 885, 1151, 1430, 1449
Tru9I TTAA 6 cut(s) 507, 849, 885, 1151, 1430, 1449
TscAI CASTG 6 cut(s) 599, 1354, 1426, 1507, 1591, 1690
TseFI GTSAC 1 cut(s) 996
TseI GCWGC 4 cut(s) 493, 1094, 1112, 1124
Tsp45I GTSAC 1 cut(s) 996
TspDTI ATGAA 4 cut(s) 156, 1063, 1308, 1524
TspRI CASTG 6 cut(s) 599, 1354, 1426, 1507, 1591, 1690
Van91I CCANNNNNTGG 1 cut(s) 187
VpaK11BI GGWCC 2 cut(s) 101, 198
XapI RAATTY 3 cut(s) 760, 1172, 1381
XbaI TCTAGA 1 cut(s) 236
XceI RCATGY 2 cut(s) 592, 1418
XcmI CCANNNNNNNNNTGG 2 cut(s) 188, 403
XhoI CTCGAG 1 cut(s) 115
XspI CTAG 6 cut(s) 144, 237, 488, 912, 1001, 1335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.