Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0011585

Physical Location & Seq

Genomic Coordinates Reverse (-)

8037234 .. 8040274

Gene Structure 3041 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1108600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGTTAAAGTTGGAAACTAGACACCGAACAAATGCAAGAATGAGAGAAAGGGTCTCTCACATTTTTCTTACTCTACTTCTCCTTCTCTGTGTATATGAGTCCCATTGTGACCCGGTTAGGGATGCGGAAGCGGTAGCTCCTGATGTTGCAACCGGTGTAAACCCTCAGCCTTTTCTTCCTTTATTAGCCCCTTCACCATTGACGCCATTCACGAATAACAGCGTCCCAGCATTATCAGGACTCTGTACATTAAATTTTTCAGCGGCTGTAAATATGATGACCATAACAGCAACTGACTGCTGGGCTTTCTTCGCACCCTTATTGGCCGATGTAGTTTGTTGTCCTCAATTTGATGCCACCTTAGCAACTCTTATAGGACACTCAAGTAAATCCTCTGGGATGCTCTCTTTGAATGCAACTCATGCAAAACACTGCCTCTCAGATGTTGAGAAGATCCTAGAGGGTCAAGGAGCAAACGAGAATATTCAAAAGATTTGCTCAATTCGACCAGAAAACCTTACTGCAGCCTCTTGCCCTGTTACAGAGGTTGATATGTTTGAGAGCACTGTGGATTCTTCAAAACTACTTGCTGCTTGTAAAAACGTTGATCCCGTCAATGAGTGTTGTGATCAAGTTTGCCAAAATGCCATATTAGATGCTTCTAGAACAATTGCCGCGATTGGTATGCCAACTTCGGAAGGGGTCCACGAGTTTCCTGAGCACTCAACTAGGATTGATGATTGTAAGAATATTGTCCTACGATGGCTGGCCGGTAACCTTGATCCTTCTTCTGTGAATAAGACTCTTAGAGGACTTTCAAGTTGCAAAGTAAATAAAGTGTGTCCTCTGGTTTTCCCCAACATGACAAGGGTTGTGAAAGAATGTGCAAATGTGATAAGAAATGAGACAGCATGCTGCAATGCAATGGATAGTTATGTTTCCCGGTTGCAAGAACAGAGCTTCATTACAAACTTGCAGGCCTTGAATTGTGCAGCATCACTTGGAGAAAAGTTGCTGAAAGCTAATGTGTCCAATGTTTATAATCTATGTCATATAAACCTCAAGGACTTCTCTCTTCAAGAGTATGGCTGCCTTCTGCCGAGCTTGCCTTTGGATGCGACTTATGATAAAACTTCGGGAATCAGCTTCATTTGTGATCTTAACGACAACGTTGCAGCTCCATGGCCGTCTTTGTCTTCTGAATCTCCATCATCTTGCAAGAAAAGTATGCGAGAAATGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

415

Amino Acids

44.97

Weight (kDa)

5.52

Isoelectric Point (pI)

51.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPARK	PF19160	79 - 226	3.4e-22	SPARK
At1g61900	PF26584	279 - 351	7.1e-33	At1g61900-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011585)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g43210 FvH4_6g43210 FvH4_6g43210
malus_domestica	MD09G1108600.v1.1 MD17G1096500.v1.1
prunus_persica	Prupe.3G217500_v2.0.a1 Prupe.3G217500_v2.0.a1 Prupe.3G217500_v2.0.a1 Prupe.3G217500_v2.0.a1 Prupe.3G217500_v2.0.a1 Prupe.3G217500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0159431
rosa_laevigata	RLG00000021155
rosa_multiflora	Rmu_sc0007710.1_g000004
rosa_roxburghii	Rroxscaffold_2G00090590
rosa_rugosa	Rorug02G0475900
rosa_samantha	Rh2BG555600 Rh2CG525800 Rh2DG565000
rosa_wichuraiana	Rw2G044900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1041
AccII	CGCG	1 cut(s)	677
AciI	CCGC	4 cut(s)	125, 131, 263, 675
AclI	AACGTT	2 cut(s)	603, 1170
AclWI	GGATC	3 cut(s)	448, 602, 776
AcoI	YGGCCR	3 cut(s)	324, 768, 1184
AcsI	RAATTY	1 cut(s)	253
AcyI	GRCGYC	1 cut(s)	203
AfaI	GTAC	1 cut(s)	247
AfiI	CCNNNNNNNGG	1 cut(s)	118
AgeI	ACCGGT	1 cut(s)	152
AgsI	TTSAA	6 cut(s)	412, 488, 579, 819, 985, 1079
AluBI	AGCT	6 cut(s)	137, 960, 1022, 1104, 1146, 1178
AluI	AGCT	6 cut(s)	137, 960, 1022, 1104, 1146, 1178
Alw21I	GWGCWC	2 cut(s)	566, 723
Alw26I	GTCTC	2 cut(s)	58, 899
AlwI	GGATC	3 cut(s)	448, 602, 776
AlwNI	CAGNNNCTG	2 cut(s)	266, 293
AoxI	GGCC	4 cut(s)	324, 768, 978, 1184
ApeKI	GCWGC	6 cut(s)	524, 590, 915, 992, 1089, 1175
ApoI	RAATTY	1 cut(s)	253
AsiGI	ACCGGT	1 cut(s)	152
AspS9I	GGNCC	1 cut(s)	703
AsuC2I	CCSGG	2 cut(s)	113, 943
AsuHPI	GGTGA	1 cut(s)	186
AvaII	GGWCC	1 cut(s)	703
BarI	GAAGNNNNNNTAC	2 cut(s)	676, 708
BauI	CACGAG	1 cut(s)	707
BbsI	GAAGAC	1 cut(s)	1188
Bbv12I	GWGCWC	2 cut(s)	566, 723
BbvCI	CCTCAGC	1 cut(s)	165
BbvI	GCAGC	6 cut(s)	536, 577, 902, 1004, 1076, 1187
BccI	CCATC	2 cut(s)	756, 1216
BceAI	ACGGC	1 cut(s)	1171
BcgI	CGANNNNNNTGC	4 cut(s)	667, 701, 1154, 1188
BclI	TGATCA	1 cut(s)	628
BcnI	CCSGG	2 cut(s)	113, 943
BcoDI	GTCTC	2 cut(s)	58, 899
BfaI	CTAG	4 cut(s)	18, 458, 663, 729
BfmI	CTRYAG	1 cut(s)	522
BisI	GCNGC	8 cut(s)	264, 525, 591, 675, 916, 993, 1090, 1176
BlsI	GCNGC	8 cut(s)	265, 526, 592, 676, 917, 994, 1091, 1177
Bme1390I	CCNGG	2 cut(s)	113, 943
Bme18I	GGWCC	1 cut(s)	703
BmgT120I	GGNCC	1 cut(s)	703
BmiI	GGNNCC	1 cut(s)	704
BmrFI	CCNGG	2 cut(s)	113, 943
BmsI	GCATC	6 cut(s)	112, 343, 390, 646, 1004, 1105
BpiI	GAAGAC	1 cut(s)	1188
Bpu10I	CCTNAGC	3 cut(s)	165, 361, 717
BpuEI	CTTGAG	2 cut(s)	367, 1046
BpuMI	CCSGG	2 cut(s)	113, 943
BsaHI	GRCGYC	1 cut(s)	203
BsaI	GGTCTC	1 cut(s)	58
BsaJI	CCNNGG	1 cut(s)	1181
BsaWI	WCCGGW	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	1 cut(s)	118
Bse118I	RCCGGY	2 cut(s)	152, 770
Bse3DI	GCAATG	2 cut(s)	925, 930
BseDI	CCNNGG	1 cut(s)	1181
BseGI	GGATG	3 cut(s)	127, 405, 1120
BseLI	CCNNNNNNNGG	1 cut(s)	118
BseMI	GCAATG	2 cut(s)	925, 930
BseMII	CTCAG	3 cut(s)	179, 453, 708
BseXI	GCAGC	6 cut(s)	536, 577, 902, 1004, 1076, 1187
BseYI	CCCAGC	2 cut(s)	226, 300
BsgI	GTGCAG	1 cut(s)	1011
Bsh1236I	CGCG	1 cut(s)	677
BshFI	GGCC	4 cut(s)	326, 770, 980, 1186
BshTI	ACCGGT	1 cut(s)	152
BsiHKAI	GWGCWC	2 cut(s)	566, 723
BsiSI	CCGG	4 cut(s)	113, 153, 771, 943
BslFI	GGGAC	2 cut(s)	85, 209
BslI	CCNNNNNNNGG	1 cut(s)	118
BsmAI	GTCTC	2 cut(s)	58, 899
BsmFI	GGGAC	2 cut(s)	85, 209
BsmI	GAATGC	1 cut(s)	418
BsnI	GGCC	4 cut(s)	326, 770, 980, 1186
Bso31I	GGTCTC	1 cut(s)	58
Bsp1286I	GDGCHC	2 cut(s)	566, 723
Bsp1407I	TGTACA	1 cut(s)	245
Bsp143I	GATC	5 cut(s)	453, 607, 628, 781, 1156
Bsp19I	CCATGG	1 cut(s)	1181
BspACI	CCGC	4 cut(s)	125, 131, 263, 675
BspANI	GGCC	4 cut(s)	326, 770, 980, 1186
BspCNI	CTCAG	3 cut(s)	178, 452, 709
BspFNI	CGCG	1 cut(s)	677
BspLI	GGNNCC	1 cut(s)	704
BspMAI	CTGCAG	1 cut(s)	526
BspPI	GGATC	3 cut(s)	448, 602, 776
BspTNI	GGTCTC	1 cut(s)	58
BsrDI	GCAATG	2 cut(s)	925, 930
BsrFI	RCCGGY	2 cut(s)	152, 770
BsrGI	TGTACA	1 cut(s)	245
BssAI	RCCGGY	2 cut(s)	152, 770
BssECI	CCNNGG	1 cut(s)	1181
BssMI	GATC	5 cut(s)	453, 607, 628, 781, 1156
BssNI	GRCGYC	1 cut(s)	203
BssSI	CACGAG	1 cut(s)	707
BssT1I	CCWWGG	1 cut(s)	1181
Bst2BI	CACGAG	1 cut(s)	707
Bst4CI	ACNGT	1 cut(s)	568
Bst6I	CTCTTC	1 cut(s)	1080
BstACI	GRCGYC	1 cut(s)	203
BstAPI	GCANNNNNTGC	1 cut(s)	422
BstAUI	TGTACA	1 cut(s)	245
BstC8I	GCNNGC	4 cut(s)	768, 913, 978, 1106
BstDEI	CTNAG	5 cut(s)	165, 361, 439, 717, 806
BstDSI	CCRYGG	1 cut(s)	1181
BstEII	GGTNACC	1 cut(s)	773
BstF5I	GGATG	3 cut(s)	127, 405, 1120
BstFNI	CGCG	1 cut(s)	677
BstKTI	GATC	5 cut(s)	456, 610, 631, 784, 1159
BstMAI	GTCTC	2 cut(s)	58, 899
BstMBI	GATC	5 cut(s)	453, 607, 628, 781, 1156
BstMWI	GCNNNNNNNGC	4 cut(s)	311, 362, 422, 1105
BstNSI	RCATGY	1 cut(s)	915
BstPI	GGTNACC	1 cut(s)	773
BstSCI	CCNGG	2 cut(s)	111, 941
BstSFI	CTRYAG	1 cut(s)	522
BstUI	CGCG	1 cut(s)	677
BstV1I	GCAGC	6 cut(s)	536, 577, 902, 1004, 1076, 1187
BstV2I	GAAGAC	1 cut(s)	1188
BstX2I	RGATCY	1 cut(s)	453
BstYI	RGATCY	1 cut(s)	453
BsuRI	GGCC	4 cut(s)	326, 770, 980, 1186
BtgI	CCRYGG	1 cut(s)	1181
BtsCI	GGATG	3 cut(s)	127, 405, 1120
BtsI	GCAGTG	1 cut(s)	430
BtsIMutI	CAGTG	2 cut(s)	430, 564
Cac8I	GCNNGC	4 cut(s)	768, 913, 978, 1106
CaiI	CAGNNNCTG	2 cut(s)	266, 293
Cfr10I	RCCGGY	2 cut(s)	152, 770
Cfr13I	GGNCC	1 cut(s)	703
CseI	GACGC	2 cut(s)	211, 211
Csp6I	GTAC	1 cut(s)	246
CspAI	ACCGGT	1 cut(s)	152
CviAII	CATG	4 cut(s)	422, 862, 912, 1182
CviQI	GTAC	1 cut(s)	246
DdeI	CTNAG	5 cut(s)	165, 361, 439, 717, 806
DpnI	GATC	5 cut(s)	455, 609, 630, 783, 1158
DpnII	GATC	5 cut(s)	453, 607, 628, 781, 1156
EaeI	YGGCCR	3 cut(s)	324, 768, 1184
Eam1104I	CTCTTC	1 cut(s)	1080
EarI	CTCTTC	1 cut(s)	1080
Eco130I	CCWWGG	1 cut(s)	1181
Eco147I	AGGCCT	1 cut(s)	980
Eco31I	GGTCTC	1 cut(s)	58
Eco47I	GGWCC	1 cut(s)	703
Eco91I	GGTNACC	1 cut(s)	773
EcoO65I	GGTNACC	1 cut(s)	773
EcoT14I	CCWWGG	1 cut(s)	1181
ErhI	CCWWGG	1 cut(s)	1181
FaeI	CATG	4 cut(s)	425, 865, 915, 1185
FaqI	GGGAC	2 cut(s)	85, 209
FatI	CATG	4 cut(s)	421, 861, 911, 1181
FbaI	TGATCA	1 cut(s)	628
Fnu4HI	GCNGC	8 cut(s)	264, 525, 591, 675, 916, 993, 1090, 1176
FokI	GGATG	3 cut(s)	134, 412, 1127
Fsp4HI	GCNGC	8 cut(s)	264, 525, 591, 675, 916, 993, 1090, 1176
FspBI	CTAG	4 cut(s)	18, 458, 663, 729
GluI	GCNGC	8 cut(s)	264, 525, 591, 675, 916, 993, 1090, 1176
GsaI	CCCAGC	2 cut(s)	230, 304
HaeIII	GGCC	4 cut(s)	326, 770, 980, 1186
HapII	CCGG	4 cut(s)	113, 153, 771, 943
HgaI	GACGC	2 cut(s)	211, 211
Hin1I	GRCGYC	1 cut(s)	203
Hin1II	CATG	4 cut(s)	425, 865, 915, 1185
HinfI	GANTC	6 cut(s)	98, 240, 572, 802, 1140, 1202
HpaII	CCGG	4 cut(s)	113, 153, 771, 943
HphI	GGTGA	1 cut(s)	186
Hpy166II	GTNNAC	2 cut(s)	160, 706
Hpy188I	TCNGA	3 cut(s)	442, 697, 1201
Hpy188III	TCNNGA	7 cut(s)	140, 211, 237, 663, 716, 1079, 1137
Hpy8I	GTNNAC	2 cut(s)	160, 706
HpyAV	CCTTC	5 cut(s)	92, 201, 692, 795, 1103
HpyCH4III	ACNGT	1 cut(s)	568
HpyCH4IV	ACGT	2 cut(s)	603, 1170
HpyF10VI	GCNNNNNNNGC	4 cut(s)	311, 362, 422, 1105
HpyF3I	CTNAG	5 cut(s)	165, 361, 439, 717, 806
HpySE526I	ACGT	2 cut(s)	603, 1170
Hsp92I	GRCGYC	1 cut(s)	203
Hsp92II	CATG	4 cut(s)	425, 865, 915, 1185
Ksp22I	TGATCA	1 cut(s)	628
Kzo9I	GATC	5 cut(s)	453, 607, 628, 781, 1156
LmnI	GCTCC	3 cut(s)	142, 470, 1183
Lsp1109I	GCAGC	6 cut(s)	536, 577, 902, 1004, 1076, 1187
LweI	GCATC	6 cut(s)	112, 343, 390, 646, 1004, 1105
MaeI	CTAG	4 cut(s)	18, 458, 663, 729
MaeII	ACGT	2 cut(s)	603, 1170
MaeIII	GTNAC	3 cut(s)	107, 538, 773
MalI	GATC	5 cut(s)	455, 609, 630, 783, 1158
MboI	GATC	5 cut(s)	453, 607, 628, 781, 1156
MboII	GAAGA	7 cut(s)	167, 301, 463, 567, 780, 1067, 1188
MfeI	CAATTG	1 cut(s)	669
MflI	RGATCY	1 cut(s)	453
MhlI	GDGCHC	2 cut(s)	566, 723
MluCI	AATT	5 cut(s)	253, 347, 501, 669, 985
MlyI	GAGTC	3 cut(s)	107, 234, 796
MseI	TTAA	4 cut(s)	5, 251, 1161, 1243
MspA1I	CMGCKG	1 cut(s)	263
MspI	CCGG	4 cut(s)	113, 153, 771, 943
MspR9I	CCNGG	2 cut(s)	113, 943
MunI	CAATTG	1 cut(s)	669
Mva1269I	GAATGC	1 cut(s)	418
MvnI	CGCG	1 cut(s)	677
MwoI	GCNNNNNNNGC	4 cut(s)	311, 362, 422, 1105
NciI	CCSGG	2 cut(s)	113, 943
NcoI	CCATGG	1 cut(s)	1181
NdeII	GATC	5 cut(s)	453, 607, 628, 781, 1156
NlaIII	CATG	4 cut(s)	425, 865, 915, 1185
NlaIV	GGNNCC	1 cut(s)	704
NmeAIII	GCCGAG	1 cut(s)	1125
NmuCI	GTSAC	1 cut(s)	107
NspI	RCATGY	1 cut(s)	915
PaeI	GCATGC	1 cut(s)	915
PceI	AGGCCT	1 cut(s)	980
PcsI	WCGNNNNNNNCGW	2 cut(s)	209, 609
PctI	GAATGC	1 cut(s)	418
PfeI	GAWTC	3 cut(s)	572, 1140, 1202
PinAI	ACCGGT	1 cut(s)	152
PkrI	GCNGC	8 cut(s)	265, 526, 592, 676, 917, 994, 1091, 1177
PleI	GAGTC	3 cut(s)	106, 234, 796
PpsI	GAGTC	3 cut(s)	106, 234, 796
PsiI	TTATAA	1 cut(s)	1041
Psp1406I	AACGTT	2 cut(s)	603, 1170
PspEI	GGTNACC	1 cut(s)	773
PspFI	CCCAGC	2 cut(s)	226, 300
PspN4I	GGNNCC	1 cut(s)	704
PspPI	GGNCC	1 cut(s)	703
PstI	CTGCAG	1 cut(s)	526
PstNI	CAGNNNCTG	2 cut(s)	266, 293
PsuI	RGATCY	1 cut(s)	453
RsaI	GTAC	1 cut(s)	247
RsaNI	GTAC	1 cut(s)	246
SaqAI	TTAA	4 cut(s)	5, 251, 1161, 1243
SatI	GCNGC	8 cut(s)	264, 525, 591, 675, 916, 993, 1090, 1176
Sau3AI	GATC	5 cut(s)	453, 607, 628, 781, 1156
Sau96I	GGNCC	1 cut(s)	703
SchI	GAGTC	3 cut(s)	107, 234, 796
ScrFI	CCNGG	2 cut(s)	113, 943
SduI	GDGCHC	2 cut(s)	566, 723
SfaNI	GCATC	6 cut(s)	112, 343, 390, 646, 1004, 1105
SfcI	CTRYAG	1 cut(s)	522
SinI	GGWCC	1 cut(s)	703
SmlI	CTYRAG	2 cut(s)	382, 1061
SmoI	CTYRAG	2 cut(s)	382, 1061
SphI	GCATGC	1 cut(s)	915
Sse9I	AATT	5 cut(s)	253, 347, 501, 669, 985
SseBI	AGGCCT	1 cut(s)	980
SsiI	CCGC	4 cut(s)	125, 131, 263, 675
SspI	AATATT	2 cut(s)	484, 751
SspMI	CTAG	4 cut(s)	18, 458, 663, 729
StuI	AGGCCT	1 cut(s)	980
StyD4I	CCNGG	2 cut(s)	111, 941
StyI	CCWWGG	1 cut(s)	1181
TaaI	ACNGT	1 cut(s)	568
TaiI	ACGT	2 cut(s)	606, 1173
TaqI	TCGA	1 cut(s)	505
TasI	AATT	5 cut(s)	253, 347, 501, 669, 985
TatI	WGTACW	1 cut(s)	245
TauI	GCSGC	2 cut(s)	266, 677
TfiI	GAWTC	3 cut(s)	572, 1140, 1202
Tru1I	TTAA	4 cut(s)	5, 251, 1161, 1243
Tru9I	TTAA	4 cut(s)	5, 251, 1161, 1243
TscAI	CASTG	2 cut(s)	437, 571
TseFI	GTSAC	1 cut(s)	107
TseI	GCWGC	6 cut(s)	524, 590, 915, 992, 1089, 1175
Tsp45I	GTSAC	1 cut(s)	107
TspDTI	ATGAA	2 cut(s)	952, 1138
TspRI	CASTG	2 cut(s)	437, 571
VpaK11BI	GGWCC	1 cut(s)	703
XapI	RAATTY	1 cut(s)	253
XbaI	TCTAGA	1 cut(s)	662
XceI	RCATGY	1 cut(s)	915
XspI	CTAG	4 cut(s)	18, 458, 663, 729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.