Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007710.1

Orthogroup ID

OG0011585

Physical Location & Seq

Genomic Coordinates Reverse (-)

17102 .. 19699

Gene Structure 2598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007710.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

atgaggcagagggtctcttatggtccaggcctccttactcttactctacttttcagtctctgtgtatatgagtcccaatgtgggtcagttggcgatgtggaggcaattgctcctgatatctcatccagtgtgaaccctcaaccttttctgcctttattagcaccttcaccattgacaccattcacaaatgacagcattccgacattatcaggactctgtacattgaattttacagctgccagtgatatgatgagcaaaacagcaaccgactgctgggccttttttgcgcccgtattggctaatgtagtgtgttgccctcagcttgaggccaccttgaccactcttatagggcactccagtaaatactctaggatgctctctttgaatataactcatgcaaagcactgcctctcagatgttgagaagatcctagagagtcaaggagccaataagactgttcaaaagatttgctcaattcaaccaaaaaacctcactcaagcttcttgccctgttacaaaggttgatgcgtttgagagcattgtggattcttcaaaactacttgctgcttgccaaaaagttgatcctgtcaatgagtgttgtcaggaagtttgccaaaatgccatattagatgctgctagaaaacttgctgagattggtattgctgcaaatttggaaggggtccattccgtacctgaacagtcaaccaggatagatgattgtaagaatattgtgctgcgatggctagcgagtaaccttgatccttcttctgcaaatatggtccttagaggactttcaaattgcaaagtaaataaagtgtgtcctcttattttccccaacatgacacgtgttgtgaaagaatgtgcaaatatggtaacaagccaggctgcctgttgcaaagcaatggatagttatgtttcccagttgcaagagcagagctttattacaaacttgcaggccttaaattgtgctgcatcacttggagtgaagttgcagaaagctaattgttttcgtttttctgacctgtcattcctgatggtggacttcactaattggaggcatcagttggatcacaagagtatggctgccttctgccaagcctgccttcagatgcaacatttgacaaaacttcaggagttagcttcatttgtgatcttaatgacaacattgcagctccgtggccctcttcaatttctgaacctccatcgtcctgcaacagaagtatgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

408

Amino Acids

44.54

Weight (kDa)

7.0

Isoelectric Point (pI)

48.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011585)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g43210 FvH4_6g43210 FvH4_6g43210
malus_domestica	MD09G1108600.v1.1 MD17G1096500.v1.1
prunus_persica	Prupe.3G217500_v2.0.a1 Prupe.3G217500_v2.0.a1 Prupe.3G217500_v2.0.a1 Prupe.3G217500_v2.0.a1 Prupe.3G217500_v2.0.a1 Prupe.3G217500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0159431
rosa_laevigata	RLG00000021155
rosa_multiflora	Rmu_sc0007710.1_g000004
rosa_roxburghii	Rroxscaffold_2G00090590
rosa_rugosa	Rorug02G0475900
rosa_samantha	Rh2BG555600 Rh2CG525800 Rh2DG565000
rosa_wichuraiana	Rw2G044900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	421, 575, 752, 1074
AcsI	RAATTY	2 cut(s)	226, 667
AcuI	CTGAAG	2 cut(s)	1088, 1112
AcvI	CACGTG	1 cut(s)	845
AfaI	GTAC	2 cut(s)	220, 690
AfiI	CCNNNNNNNGG	3 cut(s)	81, 273, 1036
AflIII	ACRYGT	2 cut(s)	842, 844
AgsI	TTSAA	7 cut(s)	226, 385, 461, 479, 552, 795, 1187
AjnI	CCWGG	3 cut(s)	25, 704, 879
AjuI	GAANNNNNNNTTGG	2 cut(s)	1086, 1118
AluBI	AGCT	7 cut(s)	236, 322, 500, 936, 998, 1139, 1171
AluI	AGCT	7 cut(s)	236, 322, 500, 936, 998, 1139, 1171
Alw26I	GTCTC	2 cut(s)	19, 62
AlwI	GGATC	4 cut(s)	421, 575, 752, 1074
AlwNI	CAGNNNCTG	1 cut(s)	60
AoxI	GGCC	5 cut(s)	28, 276, 327, 954, 1177
ApeKI	GCWGC	9 cut(s)	236, 563, 632, 662, 733, 884, 968, 1082, 1168
ApoI	RAATTY	2 cut(s)	226, 667
AspLEI	GCGC	1 cut(s)	289
AspS9I	GGNCC	5 cut(s)	23, 276, 679, 778, 1178
AsuHPI	GGTGA	1 cut(s)	159
AsuNHI	GCTAGC	1 cut(s)	742
AvaII	GGWCC	3 cut(s)	23, 679, 778
BaeGI	GKGCMC	1 cut(s)	354
BbrPI	CACGTG	1 cut(s)	845
BbvCI	CCTCAGC	1 cut(s)	318
BbvI	GCAGC	9 cut(s)	223, 550, 619, 649, 720, 871, 955, 1069, 1180
BccI	CCATC	3 cut(s)	732, 1027, 1209
BciT130I	CCWGG	3 cut(s)	27, 706, 881
BcoDI	GTCTC	2 cut(s)	19, 62
BfaI	CTAG	5 cut(s)	369, 431, 636, 743, 1225
BisI	GCNGC	9 cut(s)	237, 564, 633, 663, 734, 885, 969, 1083, 1169
BlsI	GCNGC	9 cut(s)	238, 565, 634, 664, 735, 886, 970, 1084, 1170
Bme1390I	CCNGG	3 cut(s)	27, 706, 881
Bme18I	GGWCC	3 cut(s)	23, 679, 778
BmgT120I	GGNCC	5 cut(s)	23, 276, 679, 778, 1178
BmiI	GGNNCC	2 cut(s)	445, 680
BmrFI	CCNGG	3 cut(s)	27, 706, 881
BmrI	ACTGGG	1 cut(s)	913
BmsI	GCATC	6 cut(s)	363, 514, 619, 980, 1066, 1098
BmtI	GCTAGC	1 cut(s)	746
BmuI	ACTGGG	1 cut(s)	913
BpmI	CTGGAG	1 cut(s)	340
Bpu10I	CCTNAGC	1 cut(s)	318
BpuEI	CTTGAG	2 cut(s)	344, 480
BsaAI	YACGTR	1 cut(s)	845
BsaI	GGTCTC	1 cut(s)	19
BsaJI	CCNNGG	1 cut(s)	1174
Bsc4I	CCNNNNNNNGG	3 cut(s)	81, 273, 1036
Bse1I	ACTGG	4 cut(s)	126, 240, 357, 919
Bse3DI	GCAATG	2 cut(s)	906, 1163
BseBI	CCWGG	3 cut(s)	27, 706, 881
BseDI	CCNNGG	1 cut(s)	1174
BseGI	GGATG	2 cut(s)	122, 378
BseLI	CCNNNNNNNGG	3 cut(s)	81, 273, 1036
BseMI	GCAATG	2 cut(s)	906, 1163
BseMII	CTCAG	3 cut(s)	332, 426, 639
BseNI	ACTGG	4 cut(s)	126, 240, 357, 919
BseSI	GKGCMC	1 cut(s)	354
BseXI	GCAGC	9 cut(s)	223, 550, 619, 649, 720, 871, 955, 1069, 1180
BseYI	CCCAGC	1 cut(s)	273
BshFI	GGCC	5 cut(s)	30, 278, 329, 956, 1179
BslFI	GGGAC	1 cut(s)	58
BslI	CCNNNNNNNGG	3 cut(s)	81, 273, 1036
BsmAI	GTCTC	2 cut(s)	19, 62
BsmFI	GGGAC	1 cut(s)	58
BsmI	GAATGC	1 cut(s)	195
BsnI	GGCC	5 cut(s)	30, 278, 329, 956, 1179
Bso31I	GGTCTC	1 cut(s)	19
Bsp1286I	GDGCHC	1 cut(s)	354
Bsp1407I	TGTACA	1 cut(s)	218
Bsp143I	GATC	5 cut(s)	426, 580, 757, 1066, 1149
BspANI	GGCC	5 cut(s)	30, 278, 329, 956, 1179
BspCNI	CTCAG	3 cut(s)	331, 425, 640
BspLI	GGNNCC	2 cut(s)	445, 680
BspOI	GCTAGC	1 cut(s)	746
BspPI	GGATC	4 cut(s)	421, 575, 752, 1074
BspTNI	GGTCTC	1 cut(s)	19
BsrDI	GCAATG	2 cut(s)	906, 1163
BsrGI	TGTACA	1 cut(s)	218
BsrI	ACTGG	4 cut(s)	126, 240, 357, 919
BssECI	CCNNGG	1 cut(s)	1174
BssMI	GATC	5 cut(s)	426, 580, 757, 1066, 1149
Bst2UI	CCWGG	3 cut(s)	27, 706, 881
Bst4CI	ACNGT	2 cut(s)	457, 699
Bst6I	CTCTTC	1 cut(s)	1188
BstAUI	TGTACA	1 cut(s)	218
BstBAI	YACGTR	1 cut(s)	845
BstC8I	GCNNGC	4 cut(s)	568, 744, 954, 1099
BstDEI	CTNAG	4 cut(s)	318, 412, 648, 782
BstDSI	CCRYGG	1 cut(s)	1174
BstF5I	GGATG	2 cut(s)	122, 378
BstHHI	GCGC	1 cut(s)	289
BstKTI	GATC	5 cut(s)	429, 583, 760, 1069, 1152
BstMAI	GTCTC	2 cut(s)	19, 62
BstMBI	GATC	5 cut(s)	426, 580, 757, 1066, 1149
BstMWI	GCNNNNNNNGC	3 cut(s)	284, 739, 1098
BstNI	CCWGG	3 cut(s)	27, 706, 881
BstSCI	CCNGG	3 cut(s)	25, 704, 879
BstSLI	GKGCMC	1 cut(s)	354
BstV1I	GCAGC	9 cut(s)	223, 550, 619, 649, 720, 871, 955, 1069, 1180
BstX2I	RGATCY	1 cut(s)	426
BstYI	RGATCY	1 cut(s)	426
BsuRI	GGCC	5 cut(s)	30, 278, 329, 956, 1179
BtgI	CCRYGG	1 cut(s)	1174
BtgZI	GCGATG	2 cut(s)	108, 751
BtsCI	GGATG	2 cut(s)	122, 378
BtsI	GCAGTG	1 cut(s)	403
BtsIMutI	CAGTG	3 cut(s)	133, 247, 403
Cac8I	GCNNGC	4 cut(s)	568, 744, 954, 1099
CaiI	CAGNNNCTG	1 cut(s)	60
CfoI	GCGC	1 cut(s)	289
Cfr13I	GGNCC	5 cut(s)	23, 276, 679, 778, 1178
Csp6I	GTAC	2 cut(s)	219, 689
CviAII	CATG	2 cut(s)	395, 838
CviQI	GTAC	2 cut(s)	219, 689
DdeI	CTNAG	4 cut(s)	318, 412, 648, 782
DpnI	GATC	5 cut(s)	428, 582, 759, 1068, 1151
DpnII	GATC	5 cut(s)	426, 580, 757, 1066, 1149
Eam1104I	CTCTTC	1 cut(s)	1188
EarI	CTCTTC	1 cut(s)	1188
Eco147I	AGGCCT	2 cut(s)	30, 956
Eco31I	GGTCTC	1 cut(s)	19
Eco32I	GATATC	1 cut(s)	118
Eco47I	GGWCC	3 cut(s)	23, 679, 778
Eco57I	CTGAAG	2 cut(s)	1088, 1112
Eco72I	CACGTG	1 cut(s)	845
EcoRII	CCWGG	3 cut(s)	25, 704, 879
EcoRV	GATATC	1 cut(s)	118
FaeI	CATG	2 cut(s)	398, 841
FalI	AAGNNNNNCTT	2 cut(s)	1086, 1118
FaqI	GGGAC	1 cut(s)	58
FatI	CATG	2 cut(s)	394, 837
Fnu4HI	GCNGC	9 cut(s)	237, 564, 633, 663, 734, 885, 969, 1083, 1169
FokI	GGATG	2 cut(s)	109, 385
Fsp4HI	GCNGC	9 cut(s)	237, 564, 633, 663, 734, 885, 969, 1083, 1169
FspBI	CTAG	5 cut(s)	369, 431, 636, 743, 1225
GlaI	GCGC	1 cut(s)	288
GluI	GCNGC	9 cut(s)	237, 564, 633, 663, 734, 885, 969, 1083, 1169
GsaI	CCCAGC	1 cut(s)	277
GsuI	CTGGAG	1 cut(s)	340
HaeIII	GGCC	5 cut(s)	30, 278, 329, 956, 1179
HhaI	GCGC	1 cut(s)	289
Hin1II	CATG	2 cut(s)	398, 841
Hin6I	GCGC	1 cut(s)	287
HinP1I	GCGC	1 cut(s)	287
HincII	GTYRAC	1 cut(s)	702
HindII	GTYRAC	1 cut(s)	702
HindIII	AAGCTT	1 cut(s)	498
HinfI	GANTC	4 cut(s)	71, 213, 436, 545
HphI	GGTGA	1 cut(s)	159
Hpy166II	GTNNAC	3 cut(s)	133, 702, 1039
Hpy188I	TCNGA	5 cut(s)	201, 415, 1018, 1107, 1194
Hpy188III	TCNNGA	5 cut(s)	113, 210, 602, 1030, 1130
Hpy8I	GTNNAC	3 cut(s)	133, 702, 1039
HpyAV	CCTTC	5 cut(s)	174, 668, 771, 1096, 1112
HpyCH4III	ACNGT	2 cut(s)	457, 699
HpyCH4IV	ACGT	1 cut(s)	844
HpyF10VI	GCNNNNNNNGC	3 cut(s)	284, 739, 1098
HpyF3I	CTNAG	4 cut(s)	318, 412, 648, 782
HpySE526I	ACGT	1 cut(s)	844
Hsp92II	CATG	2 cut(s)	398, 841
HspAI	GCGC	1 cut(s)	287
Kzo9I	GATC	5 cut(s)	426, 580, 757, 1066, 1149
LmnI	GCTCC	3 cut(s)	115, 443, 1176
Lsp1109I	GCAGC	9 cut(s)	223, 550, 619, 649, 720, 871, 955, 1069, 1180
LweI	GCATC	6 cut(s)	363, 514, 619, 980, 1066, 1098
MaeI	CTAG	5 cut(s)	369, 431, 636, 743, 1225
MaeII	ACGT	1 cut(s)	844
MaeIII	GTNAC	3 cut(s)	511, 749, 871
MalI	GATC	5 cut(s)	428, 582, 759, 1068, 1151
MboI	GATC	5 cut(s)	426, 580, 757, 1066, 1149
MboII	GAAGA	4 cut(s)	436, 540, 756, 1175
MfeI	CAATTG	1 cut(s)	105
MflI	RGATCY	1 cut(s)	426
MhlI	GDGCHC	1 cut(s)	354
MluCI	AATT	9 cut(s)	105, 226, 474, 667, 796, 961, 1000, 1048, 1187
MlyI	GAGTC	3 cut(s)	80, 207, 445
MmeI	TCCRAC	2 cut(s)	224, 1044
MseI	TTAA	2 cut(s)	959, 1154
MspA1I	CMGCKG	1 cut(s)	236
MspR9I	CCNGG	3 cut(s)	27, 706, 881
MunI	CAATTG	1 cut(s)	105
Mva1269I	GAATGC	1 cut(s)	195
MvaI	CCWGG	3 cut(s)	27, 706, 881
MwoI	GCNNNNNNNGC	3 cut(s)	284, 739, 1098
NdeII	GATC	5 cut(s)	426, 580, 757, 1066, 1149
NheI	GCTAGC	1 cut(s)	742
NlaIII	CATG	2 cut(s)	398, 841
NlaIV	GGNNCC	2 cut(s)	445, 680
PceI	AGGCCT	2 cut(s)	30, 956
PctI	GAATGC	1 cut(s)	195
PfeI	GAWTC	1 cut(s)	545
PkrI	GCNGC	9 cut(s)	238, 565, 634, 664, 735, 886, 970, 1084, 1170
PleI	GAGTC	3 cut(s)	79, 207, 444
PmaCI	CACGTG	1 cut(s)	845
PmlI	CACGTG	1 cut(s)	845
PpsI	GAGTC	3 cut(s)	79, 207, 444
Ppu21I	YACGTR	1 cut(s)	845
Psp6I	CCWGG	3 cut(s)	25, 704, 879
PspCI	CACGTG	1 cut(s)	845
PspFI	CCCAGC	1 cut(s)	273
PspGI	CCWGG	3 cut(s)	25, 704, 879
PspN4I	GGNNCC	2 cut(s)	445, 680
PspPI	GGNCC	5 cut(s)	23, 276, 679, 778, 1178
PstNI	CAGNNNCTG	1 cut(s)	60
PsuI	RGATCY	1 cut(s)	426
PvuII	CAGCTG	1 cut(s)	236
RsaI	GTAC	2 cut(s)	220, 690
RsaNI	GTAC	2 cut(s)	219, 689
SaqAI	TTAA	2 cut(s)	959, 1154
SatI	GCNGC	9 cut(s)	237, 564, 633, 663, 734, 885, 969, 1083, 1169
Sau3AI	GATC	5 cut(s)	426, 580, 757, 1066, 1149
Sau96I	GGNCC	5 cut(s)	23, 276, 679, 778, 1178
SchI	GAGTC	3 cut(s)	80, 207, 445
ScrFI	CCNGG	3 cut(s)	27, 706, 881
SduI	GDGCHC	1 cut(s)	354
SfaNI	GCATC	6 cut(s)	363, 514, 619, 980, 1066, 1098
SinI	GGWCC	3 cut(s)	23, 679, 778
SmlI	CTYRAG	2 cut(s)	323, 495
SmoI	CTYRAG	2 cut(s)	323, 495
Sse9I	AATT	9 cut(s)	105, 226, 474, 667, 796, 961, 1000, 1048, 1187
SseBI	AGGCCT	2 cut(s)	30, 956
SspI	AATATT	1 cut(s)	727
SspMI	CTAG	5 cut(s)	369, 431, 636, 743, 1225
StuI	AGGCCT	2 cut(s)	30, 956
StyD4I	CCNGG	3 cut(s)	25, 704, 879
TaaI	ACNGT	2 cut(s)	457, 699
TaiI	ACGT	1 cut(s)	847
TasI	AATT	9 cut(s)	105, 226, 474, 667, 796, 961, 1000, 1048, 1187
TatI	WGTACW	1 cut(s)	218
TfiI	GAWTC	1 cut(s)	545
Tru1I	TTAA	2 cut(s)	959, 1154
Tru9I	TTAA	2 cut(s)	959, 1154
TscAI	CASTG	3 cut(s)	133, 247, 410
TseI	GCWGC	9 cut(s)	236, 563, 632, 662, 733, 884, 968, 1082, 1168
TspDTI	ATGAA	1 cut(s)	1131
TspGWI	ACGGA	2 cut(s)	676, 1163
TspRI	CASTG	3 cut(s)	133, 247, 410
VpaK11BI	GGWCC	3 cut(s)	23, 679, 778
XapI	RAATTY	2 cut(s)	226, 667
XspI	CTAG	5 cut(s)	369, 431, 636, 743, 1225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.