Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0011585

Physical Location & Seq

Genomic Coordinates Reverse (-)

12302010 .. 12305765

Gene Structure 3756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00090590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGAGGCAGAGGGTCTCTTATGGTCCAGGCCTCCTTACTCTTACTCTACTTTTCACTCTCTGTGTATATGAGTCCCAATGTGGGTCAGTTGGCGATGTGGAGGCAATTGCTCCTGATATCTCATCCAGTGTGAACCCTCAACCTTTTCTGCCTTTATTAGCACCTTCACCATTGACACCATTCACAAATGACAGCATTCGGACATTATCAGGACTCTGTACATTGAATTTTACAGCTGCCAGTGATATGATGAGCAAAACAGCAACGGACTGCTGGGCCTTTTTTGCGCCTGTATTGGCTAATGTAGTGTGTTGTCCTCAGCTTGAGGCCACCTTGACCACTCTTATAGGGCACTCCAGTAAATACTCTAGGATGCTCTCTTTGAATATAACTCATGCAAAGCACTGCCTCTCAGATGTTGAGAAGATCCTAGAGAGTCAAGGAGCCAATAAGACTGTTCAAAAGATTTGCTCAATTCAACCAAAAAACCTCACAGAAGCTTCTTGCCCTGTTACGAAGGTTGATGCGTTTGAGAGCATTGTGGATTCCTCAAAACTACTTGCTGCTTGCCAAAAAGTTGATCCTGTCAATGAATGTTGTCAGGAAGTTTGCCAAAATGCCATATTAGATGCTGCTAGAAAACTTGCTGAGATTGGAATTGCTGCAAATTTGGAAGGGGTCCATTCTGTACTTGAACAGTCAACCGGGATAGATGATTGTAAGAATATTGTGCTGCGATGGCTAGCGAGTAACCTTGATCCTTCTTCTGCAAATAAGGTCCTTAGAGGACTTTCAAATTGCAAAGTAAATAAAGTGTGTCCTCTTGTTTTCCCCAACATGACACGTGTTGTGAAAGAATGTGCAAATATGATAACGAGCCAGGCTGCCTGTTGCAAAGCAATGGATAGTTATGTTTCCCAGTTGCAAGAGCAGAGCTTTATTACAAACTTGCAGGCCTTAAATTGTGCTGCATCACTTGGAGTGAAGTTACAGAAAGCTAATGTATCCAATAATGTTTATCAACTTTGTCACATAAACCTCAAGGACTTCTCTCTTCAAGTTGGATCACAAGAGTATGGCTGCCTTCTGCCAAGCCTGCCTTCAGATGCAACATTTGACAAAACTTCAGGAGTCGGCTTCATTTGTGATCTTAATGACAACATTGCTGCTCCATGGCCCTCTTCAATTTCTGAACCTCCATCGTCCTGCAACAGAACTACCAAAAACCCTGCAGTACCCAAAGCAACATCTGCACAAAGCGGTCTTTACAGGAACTTGATGCTCCCTTCCTTATTTTCCTCCTTGGTGATTCTCAAGCTGCTTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

442

Amino Acids

47.48

Weight (kDa)

6.51

Isoelectric Point (pI)

52.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPARK	PF19160	70 - 221	1.1e-22	SPARK
At1g61900	PF26584	271 - 344	8.9e-35	At1g61900-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011585)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g43210 FvH4_6g43210 FvH4_6g43210
malus_domestica	MD09G1108600.v1.1 MD17G1096500.v1.1
prunus_persica	Prupe.3G217500_v2.0.a1 Prupe.3G217500_v2.0.a1 Prupe.3G217500_v2.0.a1 Prupe.3G217500_v2.0.a1 Prupe.3G217500_v2.0.a1 Prupe.3G217500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0159431
rosa_laevigata	RLG00000021155
rosa_multiflora	Rmu_sc0007710.1_g000004
rosa_roxburghii	Rroxscaffold_2G00090590
rosa_rugosa	Rorug02G0475900
rosa_samantha	Rh2BG555600 Rh2CG525800 Rh2DG565000
rosa_wichuraiana	Rw2G044900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	1260
AclWI	GGATC	4 cut(s)	421, 575, 752, 1072
AcsI	RAATTY	2 cut(s)	226, 667
AcuI	CTGAAG	2 cut(s)	1086, 1110
AcvI	CACGTG	1 cut(s)	845
AfaI	GTAC	3 cut(s)	220, 690, 1236
AfiI	CCNNNNNNNGG	1 cut(s)	81
AflIII	ACRYGT	2 cut(s)	842, 844
AgsI	TTSAA	8 cut(s)	226, 385, 461, 479, 695, 795, 1058, 1185
AjnI	CCWGG	2 cut(s)	25, 879
AjuI	GAANNNNNNNTTGG	2 cut(s)	1084, 1116
AluBI	AGCT	6 cut(s)	236, 322, 500, 936, 998, 1318
AluI	AGCT	6 cut(s)	236, 322, 500, 936, 998, 1318
Alw26I	GTCTC	1 cut(s)	19
AlwI	GGATC	4 cut(s)	421, 575, 752, 1072
AoxI	GGCC	5 cut(s)	28, 276, 327, 954, 1175
ApoI	RAATTY	2 cut(s)	226, 667
AspLEI	GCGC	1 cut(s)	289
AspS9I	GGNCC	5 cut(s)	23, 276, 679, 778, 1176
AsuC2I	CCSGG	1 cut(s)	706
AsuHPI	GGTGA	2 cut(s)	159, 1318
AsuNHI	GCTAGC	1 cut(s)	742
AvaII	GGWCC	3 cut(s)	23, 679, 778
BaeGI	GKGCMC	1 cut(s)	354
BbrPI	CACGTG	1 cut(s)	845
BbvCI	CCTCAGC	1 cut(s)	318
BccI	CCATC	2 cut(s)	732, 1207
BciT130I	CCWGG	2 cut(s)	27, 881
BciVI	GTATCC	1 cut(s)	1015
BcnI	CCSGG	1 cut(s)	706
BcoDI	GTCTC	1 cut(s)	19
BfaI	CTAG	4 cut(s)	369, 431, 636, 743
BfmI	CTRYAG	1 cut(s)	1230
BfuI	GTATCC	1 cut(s)	1015
Bme1390I	CCNGG	3 cut(s)	27, 706, 881
Bme18I	GGWCC	3 cut(s)	23, 679, 778
BmgT120I	GGNCC	5 cut(s)	23, 276, 679, 778, 1176
BmiI	GGNNCC	2 cut(s)	445, 680
BmrFI	CCNGG	3 cut(s)	27, 706, 881
BmrI	ACTGGG	1 cut(s)	913
BmsI	GCATC	6 cut(s)	363, 514, 619, 980, 1096, 1269
BmtI	GCTAGC	1 cut(s)	746
BmuI	ACTGGG	1 cut(s)	913
BpmI	CTGGAG	1 cut(s)	340
Bpu10I	CCTNAGC	1 cut(s)	318
BpuEI	CTTGAG	3 cut(s)	344, 1025, 1298
BpuMI	CCSGG	1 cut(s)	706
BsaAI	YACGTR	1 cut(s)	845
BsaI	GGTCTC	1 cut(s)	19
BsaJI	CCNNGG	2 cut(s)	1172, 1302
Bsc4I	CCNNNNNNNGG	1 cut(s)	81
Bse1I	ACTGG	4 cut(s)	126, 240, 357, 919
Bse3DI	GCAATG	2 cut(s)	906, 1161
BseBI	CCWGG	2 cut(s)	27, 881
BseDI	CCNNGG	2 cut(s)	1172, 1302
BseGI	GGATG	2 cut(s)	122, 378
BseLI	CCNNNNNNNGG	1 cut(s)	81
BseMI	GCAATG	2 cut(s)	906, 1161
BseMII	CTCAG	3 cut(s)	332, 426, 639
BseNI	ACTGG	4 cut(s)	126, 240, 357, 919
BseSI	GKGCMC	1 cut(s)	354
BseYI	CCCAGC	1 cut(s)	273
BsgI	GTGCAG	1 cut(s)	1236
BshFI	GGCC	5 cut(s)	30, 278, 329, 956, 1177
BsiSI	CCGG	1 cut(s)	705
BslFI	GGGAC	1 cut(s)	58
BslI	CCNNNNNNNGG	1 cut(s)	81
BsmAI	GTCTC	1 cut(s)	19
BsmFI	GGGAC	1 cut(s)	58
BsmI	GAATGC	1 cut(s)	195
BsnI	GGCC	5 cut(s)	30, 278, 329, 956, 1177
Bso31I	GGTCTC	1 cut(s)	19
Bsp1286I	GDGCHC	1 cut(s)	354
Bsp1407I	TGTACA	1 cut(s)	218
Bsp143I	GATC	5 cut(s)	426, 580, 757, 1064, 1147
Bsp19I	CCATGG	1 cut(s)	1172
BspACI	CCGC	1 cut(s)	1260
BspANI	GGCC	5 cut(s)	30, 278, 329, 956, 1177
BspCNI	CTCAG	3 cut(s)	331, 425, 640
BspLI	GGNNCC	2 cut(s)	445, 680
BspMAI	CTGCAG	1 cut(s)	1234
BspOI	GCTAGC	1 cut(s)	746
BspPI	GGATC	4 cut(s)	421, 575, 752, 1072
BspTNI	GGTCTC	1 cut(s)	19
BsrDI	GCAATG	2 cut(s)	906, 1161
BsrGI	TGTACA	1 cut(s)	218
BsrI	ACTGG	4 cut(s)	126, 240, 357, 919
BssECI	CCNNGG	2 cut(s)	1172, 1302
BssMI	GATC	5 cut(s)	426, 580, 757, 1064, 1147
BssT1I	CCWWGG	2 cut(s)	1172, 1302
Bst2UI	CCWGG	2 cut(s)	27, 881
Bst4CI	ACNGT	2 cut(s)	457, 699
Bst6I	CTCTTC	2 cut(s)	1059, 1186
BstAPI	GCANNNNNTGC	1 cut(s)	1250
BstAUI	TGTACA	1 cut(s)	218
BstBAI	YACGTR	1 cut(s)	845
BstC8I	GCNNGC	4 cut(s)	568, 744, 954, 1097
BstDEI	CTNAG	4 cut(s)	318, 412, 648, 782
BstDSI	CCRYGG	1 cut(s)	1172
BstF5I	GGATG	2 cut(s)	122, 378
BstHHI	GCGC	1 cut(s)	289
BstKTI	GATC	5 cut(s)	429, 583, 760, 1067, 1150
BstMAI	GTCTC	1 cut(s)	19
BstMBI	GATC	5 cut(s)	426, 580, 757, 1064, 1147
BstMWI	GCNNNNNNNGC	4 cut(s)	284, 739, 1096, 1250
BstNI	CCWGG	2 cut(s)	27, 881
BstSCI	CCNGG	3 cut(s)	25, 704, 879
BstSFI	CTRYAG	1 cut(s)	1230
BstSLI	GKGCMC	1 cut(s)	354
BstX2I	RGATCY	1 cut(s)	426
BstYI	RGATCY	1 cut(s)	426
BsuI	GTATCC	1 cut(s)	1015
BsuRI	GGCC	5 cut(s)	30, 278, 329, 956, 1177
BtgI	CCRYGG	1 cut(s)	1172
BtgZI	GCGATG	2 cut(s)	108, 751
BtsCI	GGATG	2 cut(s)	122, 378
BtsI	GCAGTG	1 cut(s)	403
BtsIMutI	CAGTG	3 cut(s)	133, 247, 403
Cac8I	GCNNGC	4 cut(s)	568, 744, 954, 1097
CfoI	GCGC	1 cut(s)	289
Cfr13I	GGNCC	5 cut(s)	23, 276, 679, 778, 1176
Csp6I	GTAC	3 cut(s)	219, 689, 1235
CviAII	CATG	3 cut(s)	395, 838, 1173
CviQI	GTAC	3 cut(s)	219, 689, 1235
DdeI	CTNAG	4 cut(s)	318, 412, 648, 782
DpnI	GATC	5 cut(s)	428, 582, 759, 1066, 1149
DpnII	GATC	5 cut(s)	426, 580, 757, 1064, 1147
Eam1104I	CTCTTC	2 cut(s)	1059, 1186
EarI	CTCTTC	2 cut(s)	1059, 1186
Eco130I	CCWWGG	2 cut(s)	1172, 1302
Eco147I	AGGCCT	2 cut(s)	30, 956
Eco31I	GGTCTC	1 cut(s)	19
Eco32I	GATATC	1 cut(s)	118
Eco47I	GGWCC	3 cut(s)	23, 679, 778
Eco57I	CTGAAG	2 cut(s)	1086, 1110
Eco72I	CACGTG	1 cut(s)	845
EcoO109I	RGGNCCY	1 cut(s)	778
EcoRII	CCWGG	2 cut(s)	25, 879
EcoRV	GATATC	1 cut(s)	118
EcoT14I	CCWWGG	2 cut(s)	1172, 1302
ErhI	CCWWGG	2 cut(s)	1172, 1302
FaeI	CATG	3 cut(s)	398, 841, 1176
FalI	AAGNNNNNCTT	2 cut(s)	1084, 1116
FaqI	GGGAC	1 cut(s)	58
FatI	CATG	3 cut(s)	394, 837, 1172
FokI	GGATG	2 cut(s)	109, 385
FspBI	CTAG	4 cut(s)	369, 431, 636, 743
GlaI	GCGC	1 cut(s)	288
GsaI	CCCAGC	1 cut(s)	277
GsuI	CTGGAG	1 cut(s)	340
HaeIII	GGCC	5 cut(s)	30, 278, 329, 956, 1177
HapII	CCGG	1 cut(s)	705
HhaI	GCGC	1 cut(s)	289
Hin1II	CATG	3 cut(s)	398, 841, 1176
Hin6I	GCGC	1 cut(s)	287
HinP1I	GCGC	1 cut(s)	287
HincII	GTYRAC	1 cut(s)	702
HindII	GTYRAC	1 cut(s)	702
HindIII	AAGCTT	1 cut(s)	498
HinfI	GANTC	6 cut(s)	71, 213, 436, 545, 1131, 1309
HpaII	CCGG	1 cut(s)	705
HphI	GGTGA	2 cut(s)	159, 1318
Hpy166II	GTNNAC	2 cut(s)	133, 702
Hpy188I	TCNGA	5 cut(s)	201, 415, 1105, 1192, 1328
Hpy188III	TCNNGA	4 cut(s)	113, 210, 602, 1128
Hpy8I	GTNNAC	2 cut(s)	133, 702
HpyAV	CCTTC	7 cut(s)	174, 511, 668, 771, 1094, 1110, 1296
HpyCH4III	ACNGT	2 cut(s)	457, 699
HpyCH4IV	ACGT	1 cut(s)	844
HpyF10VI	GCNNNNNNNGC	4 cut(s)	284, 739, 1096, 1250
HpyF3I	CTNAG	4 cut(s)	318, 412, 648, 782
HpySE526I	ACGT	1 cut(s)	844
Hsp92II	CATG	3 cut(s)	398, 841, 1176
HspAI	GCGC	1 cut(s)	287
Kzo9I	GATC	5 cut(s)	426, 580, 757, 1064, 1147
LmnI	GCTCC	4 cut(s)	115, 443, 1174, 1287
LweI	GCATC	6 cut(s)	363, 514, 619, 980, 1096, 1269
MaeI	CTAG	4 cut(s)	369, 431, 636, 743
MaeII	ACGT	1 cut(s)	844
MaeIII	GTNAC	4 cut(s)	511, 749, 987, 1028
MalI	GATC	5 cut(s)	428, 582, 759, 1066, 1149
MboI	GATC	5 cut(s)	426, 580, 757, 1064, 1147
MboII	GAAGA	4 cut(s)	436, 756, 1046, 1173
MfeI	CAATTG	1 cut(s)	105
MflI	RGATCY	1 cut(s)	426
MhlI	GDGCHC	1 cut(s)	354
MluCI	AATT	8 cut(s)	105, 226, 474, 657, 667, 796, 961, 1185
MlyI	GAGTC	4 cut(s)	80, 207, 445, 1140
MmeI	TCCRAC	1 cut(s)	1042
MseI	TTAA	2 cut(s)	959, 1152
MspA1I	CMGCKG	1 cut(s)	236
MspI	CCGG	1 cut(s)	705
MspR9I	CCNGG	3 cut(s)	27, 706, 881
MunI	CAATTG	1 cut(s)	105
Mva1269I	GAATGC	1 cut(s)	195
MvaI	CCWGG	2 cut(s)	27, 881
MwoI	GCNNNNNNNGC	4 cut(s)	284, 739, 1096, 1250
NciI	CCSGG	1 cut(s)	706
NcoI	CCATGG	1 cut(s)	1172
NdeII	GATC	5 cut(s)	426, 580, 757, 1064, 1147
NheI	GCTAGC	1 cut(s)	742
NlaIII	CATG	3 cut(s)	398, 841, 1176
NlaIV	GGNNCC	2 cut(s)	445, 680
NmuCI	GTSAC	1 cut(s)	1028
PceI	AGGCCT	2 cut(s)	30, 956
PctI	GAATGC	1 cut(s)	195
PfeI	GAWTC	2 cut(s)	545, 1309
PleI	GAGTC	4 cut(s)	79, 207, 444, 1139
PmaCI	CACGTG	1 cut(s)	845
PmlI	CACGTG	1 cut(s)	845
PpsI	GAGTC	4 cut(s)	79, 207, 444, 1139
Ppu21I	YACGTR	1 cut(s)	845
PpuMI	RGGWCCY	1 cut(s)	778
Psp5II	RGGWCCY	1 cut(s)	778
Psp6I	CCWGG	2 cut(s)	25, 879
PspCI	CACGTG	1 cut(s)	845
PspFI	CCCAGC	1 cut(s)	273
PspGI	CCWGG	2 cut(s)	25, 879
PspN4I	GGNNCC	2 cut(s)	445, 680
PspPI	GGNCC	5 cut(s)	23, 276, 679, 778, 1176
PspPPI	RGGWCCY	1 cut(s)	778
PstI	CTGCAG	1 cut(s)	1234
PsuI	RGATCY	1 cut(s)	426
PvuII	CAGCTG	1 cut(s)	236
RsaI	GTAC	3 cut(s)	220, 690, 1236
RsaNI	GTAC	3 cut(s)	219, 689, 1235
SaqAI	TTAA	2 cut(s)	959, 1152
Sau3AI	GATC	5 cut(s)	426, 580, 757, 1064, 1147
Sau96I	GGNCC	5 cut(s)	23, 276, 679, 778, 1176
SchI	GAGTC	4 cut(s)	80, 207, 445, 1140
ScrFI	CCNGG	3 cut(s)	27, 706, 881
SduI	GDGCHC	1 cut(s)	354
SfaNI	GCATC	6 cut(s)	363, 514, 619, 980, 1096, 1269
SfcI	CTRYAG	1 cut(s)	1230
SinI	GGWCC	3 cut(s)	23, 679, 778
SmlI	CTYRAG	3 cut(s)	323, 1040, 1313
SmoI	CTYRAG	3 cut(s)	323, 1040, 1313
Sse9I	AATT	8 cut(s)	105, 226, 474, 657, 667, 796, 961, 1185
SseBI	AGGCCT	2 cut(s)	30, 956
SsiI	CCGC	1 cut(s)	1260
SspI	AATATT	1 cut(s)	727
SspMI	CTAG	4 cut(s)	369, 431, 636, 743
StuI	AGGCCT	2 cut(s)	30, 956
StyD4I	CCNGG	3 cut(s)	25, 704, 879
StyI	CCWWGG	2 cut(s)	1172, 1302
TaaI	ACNGT	2 cut(s)	457, 699
TaiI	ACGT	1 cut(s)	847
TasI	AATT	8 cut(s)	105, 226, 474, 657, 667, 796, 961, 1185
TatI	WGTACW	2 cut(s)	218, 688
TfiI	GAWTC	2 cut(s)	545, 1309
Tru1I	TTAA	2 cut(s)	959, 1152
Tru9I	TTAA	2 cut(s)	959, 1152
TscAI	CASTG	3 cut(s)	133, 247, 410
TseFI	GTSAC	1 cut(s)	1028
Tsp45I	GTSAC	1 cut(s)	1028
TspDTI	ATGAA	2 cut(s)	606, 1129
TspGWI	ACGGA	1 cut(s)	281
TspRI	CASTG	3 cut(s)	133, 247, 410
VpaK11BI	GGWCC	3 cut(s)	23, 679, 778
XapI	RAATTY	2 cut(s)	226, 667
XspI	CTAG	4 cut(s)	369, 431, 636, 743

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.