Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0011585

Physical Location & Seq

Genomic Coordinates Forward (+)

21955492 .. 21960126

Gene Structure 4635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G217500.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ATGAGACAAAGGGTTTCTTTCAGTCTAACCCTTCCACTTACTCTACTTTTGCTTCTCTGTGTATATGAGTCCTGTGGCGGTTCAGTTAGGAATACGGAAGCAATAGCTCCTGATATCTCATCCAGTGTAAACCCTCAGCCTTTTCTTCCTTTACTAGCCCCTTCACCATTGACGGCATTCACAAATTACAGCATCCCGAAATTATCAGGACTTTGTACATTAAATTTTTCAGCAGCTGGAAATATGATGAGCGTAACGGCAACTGACTGCTGGGCTTCCTTTGCACCCTTGTTGGCGGATGTGGTTTGTTGTCCTCAATTTGATGCCACCTTAGCGACTCTTATAGGGCAATCCAGTAAATACTCTAGGATGCTCGCTTTGAATGTGACCCATGCAAAGCACTGCCTCTCAGATGTTCAGAAGATCCTAGAGGGTCAAGGAGCAAACGATAATATTCAAAAGATATGCTCAATTGAACCAGAAACCCTCACTGCAGCTTCTTGTCCTGTTATAGAGGTTGATACATTTGAGAGCACTGTGGATTCTTCAAAACTACTTTGCGCTTGCAGAAAAATTGATCTTGTCAATGAGTGTTGTGACCAAGTTTGCCAGAATGCCATATTAGATGCTGCTAGAACAATTGCGGCGATTGGTATGCCAAATTCGAAAGGGGTCAATCTATTGCCTGCACACTCAACTAGGATTGATGATTGTAAGAATATTGTCCTGCGATGGCTGGCCAGTAACCTTGATCCTTCTTCTGCGAATAAGGTTCTTAGAGGACTTTCAAATTGCAAAGTAAATAAAGTTTGTCCTCTGGTTTTCCCCAACATGACAAATGTTGTGAAAGAATGTGCCAATGGGATAAGTAATCAGACAGCATGCTGCAAAGCAATGGATAGTTATGTTTCTCAGTTGCAACAACAGAGTTTTATTACAAACTTGCAGGCCTTGAATTGTGCAGCATCACTTGGAGTGAAGTTGCAGAAAGCTAATGTATCCGACGATGTTTATAATCTTTGTCATATAAATCTCAAAGACTTCTCTCTTCAAGTTGGATCACAAGAGTATGGCTGCCTTCTGCCAAGCTTGCCTTCAGATGCAACTTATGATATAACTTCGGGAATCAGCTTCATTTGTGATCTTAATGACAACATTGCGGCTCCGTGGCCCTCTTCCTCTTCTGAACATCCATCATCTTGCAAGAAAACTACCAAACTTCCAGCAGTACCCAAAGCAACATCTGCACAAAGTGGTCTTATCAATGAGGATTTGATTTTCCTTTCGTTCTTTTCCTCCTTACTGGTTCTGAAGATGCTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

442

Amino Acids

47.28

Weight (kDa)

5.77

Isoelectric Point (pI)

54.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011585)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g43210 FvH4_6g43210 FvH4_6g43210
malus_domestica	MD09G1108600.v1.1 MD17G1096500.v1.1
prunus_persica	Prupe.3G217500_v2.0.a1 Prupe.3G217500_v2.0.a1 Prupe.3G217500_v2.0.a1 Prupe.3G217500_v2.0.a1 Prupe.3G217500_v2.0.a1 Prupe.3G217500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0159431
rosa_laevigata	RLG00000021155
rosa_multiflora	Rmu_sc0007710.1_g000004
rosa_roxburghii	Rroxscaffold_2G00090590
rosa_rugosa	Rorug02G0475900
rosa_samantha	Rh2BG555600 Rh2CG525800 Rh2DG565000
rosa_wichuraiana	Rw2G044900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1014
AciI	CCGC	4 cut(s)	78, 296, 644, 1160
AclWI	GGATC	3 cut(s)	418, 746, 1066
AcoI	YGGCCR	1 cut(s)	738
AcsI	RAATTY	2 cut(s)	223, 661
AcuI	CTGAAG	1 cut(s)	1080
AdeI	CACNNNGTG	1 cut(s)	1253
AfaI	GTAC	2 cut(s)	217, 1230
AgsI	TTSAA	7 cut(s)	382, 458, 476, 549, 789, 955, 1052
AjuI	GAANNNNNNNTTGG	2 cut(s)	1078, 1110
AluBI	AGCT	6 cut(s)	107, 236, 497, 992, 1089, 1131
AluI	AGCT	6 cut(s)	107, 236, 497, 992, 1089, 1131
Alw21I	GWGCWC	1 cut(s)	536
AlwI	GGATC	3 cut(s)	418, 746, 1066
AlwNI	CAGNNNCTG	1 cut(s)	236
AoxI	GGCC	3 cut(s)	738, 948, 1169
ApeKI	GCWGC	6 cut(s)	233, 494, 629, 885, 962, 1074
ApoI	RAATTY	2 cut(s)	223, 661
AspLEI	GCGC	1 cut(s)	563
AspS9I	GGNCC	1 cut(s)	1170
AsuHPI	GGTGA	1 cut(s)	156
AsuII	TTCGAA	1 cut(s)	665
BalI	TGGCCA	1 cut(s)	740
Bbv12I	GWGCWC	1 cut(s)	536
BbvCI	CCTCAGC	1 cut(s)	135
BbvI	GCAGC	6 cut(s)	245, 506, 616, 872, 974, 1061
BccI	CCATC	2 cut(s)	726, 1201
BceAI	ACGGC	2 cut(s)	189, 273
BcgI	CGANNNNNNTGC	2 cut(s)	637, 671
BciVI	GTATCC	1 cut(s)	1009
BfaI	CTAG	5 cut(s)	155, 366, 428, 633, 699
BfmI	CTRYAG	1 cut(s)	492
BfuI	GTATCC	1 cut(s)	1009
BisI	GCNGC	8 cut(s)	234, 495, 630, 645, 886, 963, 1075, 1161
BlsI	GCNGC	8 cut(s)	235, 496, 631, 646, 887, 964, 1076, 1162
BmgT120I	GGNCC	1 cut(s)	1170
BmiI	GGNNCC	1 cut(s)	1164
BmsI	GCATC	7 cut(s)	201, 313, 360, 616, 974, 1090, 1305
Bpu10I	CCTNAGC	2 cut(s)	135, 331
Bpu14I	TTCGAA	1 cut(s)	665
BsaJI	CCNNGG	1 cut(s)	1166
Bse1I	ACTGG	4 cut(s)	123, 354, 741, 1308
Bse3DI	GCAATG	2 cut(s)	900, 1155
BseDI	CCNNGG	1 cut(s)	1166
BseGI	GGATG	5 cut(s)	119, 192, 304, 375, 1189
BseMI	GCAATG	2 cut(s)	900, 1155
BseMII	CTCAG	3 cut(s)	149, 423, 926
BseNI	ACTGG	4 cut(s)	123, 354, 741, 1308
BseXI	GCAGC	6 cut(s)	245, 506, 616, 872, 974, 1061
BseYI	CCCAGC	1 cut(s)	270
BsgI	GTGCAG	3 cut(s)	672, 981, 1230
BshFI	GGCC	3 cut(s)	740, 950, 1171
BsiHKAI	GWGCWC	1 cut(s)	536
BsmI	GAATGC	2 cut(s)	176, 619
BsnI	GGCC	3 cut(s)	740, 950, 1171
Bsp119I	TTCGAA	1 cut(s)	665
Bsp1286I	GDGCHC	1 cut(s)	536
Bsp1407I	TGTACA	1 cut(s)	215
Bsp143I	GATC	5 cut(s)	423, 577, 751, 1058, 1141
BspACI	CCGC	4 cut(s)	78, 296, 644, 1160
BspANI	GGCC	3 cut(s)	740, 950, 1171
BspCNI	CTCAG	3 cut(s)	148, 422, 925
BspLI	GGNNCC	1 cut(s)	1164
BspMAI	CTGCAG	1 cut(s)	496
BspPI	GGATC	3 cut(s)	418, 746, 1066
BspT104I	TTCGAA	1 cut(s)	665
BsrDI	GCAATG	2 cut(s)	900, 1155
BsrGI	TGTACA	1 cut(s)	215
BsrI	ACTGG	4 cut(s)	123, 354, 741, 1308
BssECI	CCNNGG	1 cut(s)	1166
BssMI	GATC	5 cut(s)	423, 577, 751, 1058, 1141
Bst4CI	ACNGT	1 cut(s)	538
Bst6I	CTCTTC	3 cut(s)	1053, 1180, 1186
BstAPI	GCANNNNNTGC	1 cut(s)	1244
BstAUI	TGTACA	1 cut(s)	215
BstBI	TTCGAA	1 cut(s)	665
BstC8I	GCNNGC	7 cut(s)	375, 565, 687, 738, 883, 948, 1091
BstDEI	CTNAG	5 cut(s)	135, 331, 409, 776, 912
BstDSI	CCRYGG	1 cut(s)	1166
BstF5I	GGATG	5 cut(s)	119, 192, 304, 375, 1189
BstHHI	GCGC	1 cut(s)	563
BstKTI	GATC	5 cut(s)	426, 580, 754, 1061, 1144
BstMBI	GATC	5 cut(s)	423, 577, 751, 1058, 1141
BstMWI	GCNNNNNNNGC	4 cut(s)	281, 332, 1090, 1244
BstNSI	RCATGY	1 cut(s)	885
BstSFI	CTRYAG	1 cut(s)	492
BstV1I	GCAGC	6 cut(s)	245, 506, 616, 872, 974, 1061
BstX2I	RGATCY	1 cut(s)	423
BstYI	RGATCY	1 cut(s)	423
BsuI	GTATCC	1 cut(s)	1009
BsuRI	GGCC	3 cut(s)	740, 950, 1171
BtgI	CCRYGG	1 cut(s)	1166
BtgZI	GCGATG	1 cut(s)	745
BtsCI	GGATG	5 cut(s)	119, 192, 304, 375, 1189
BtsI	GCAGTG	2 cut(s)	400, 489
BtsIMutI	CAGTG	4 cut(s)	130, 400, 489, 534
Cac8I	GCNNGC	7 cut(s)	375, 565, 687, 738, 883, 948, 1091
CaiI	CAGNNNCTG	1 cut(s)	236
CfoI	GCGC	1 cut(s)	563
Cfr13I	GGNCC	1 cut(s)	1170
Csp6I	GTAC	2 cut(s)	216, 1229
CviAII	CATG	3 cut(s)	392, 832, 882
CviQI	GTAC	2 cut(s)	216, 1229
DdeI	CTNAG	5 cut(s)	135, 331, 409, 776, 912
DpnI	GATC	5 cut(s)	425, 579, 753, 1060, 1143
DpnII	GATC	5 cut(s)	423, 577, 751, 1058, 1141
DraIII	CACNNNGTG	1 cut(s)	1253
EaeI	YGGCCR	1 cut(s)	738
Eam1104I	CTCTTC	3 cut(s)	1053, 1180, 1186
EarI	CTCTTC	3 cut(s)	1053, 1180, 1186
EciI	GGCGGA	1 cut(s)	311
Eco147I	AGGCCT	1 cut(s)	950
Eco32I	GATATC	1 cut(s)	115
Eco57I	CTGAAG	1 cut(s)	1080
EcoRV	GATATC	1 cut(s)	115
FaeI	CATG	3 cut(s)	395, 835, 885
FalI	AAGNNNNNCTT	3 cut(s)	33, 1078, 1110
FatI	CATG	3 cut(s)	391, 831, 881
Fnu4HI	GCNGC	8 cut(s)	234, 495, 630, 645, 886, 963, 1075, 1161
FokI	GGATG	5 cut(s)	106, 179, 311, 382, 1176
Fsp4HI	GCNGC	8 cut(s)	234, 495, 630, 645, 886, 963, 1075, 1161
FspBI	CTAG	5 cut(s)	155, 366, 428, 633, 699
GlaI	GCGC	1 cut(s)	562
GluI	GCNGC	8 cut(s)	234, 495, 630, 645, 886, 963, 1075, 1161
GsaI	CCCAGC	1 cut(s)	274
HaeIII	GGCC	3 cut(s)	740, 950, 1171
HhaI	GCGC	1 cut(s)	563
Hin1II	CATG	3 cut(s)	395, 835, 885
Hin6I	GCGC	1 cut(s)	561
HinP1I	GCGC	1 cut(s)	561
HindIII	AAGCTT	1 cut(s)	1087
HinfI	GANTC	4 cut(s)	68, 337, 542, 1125
HphI	GGTGA	1 cut(s)	156
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	7 cut(s)	412, 420, 876, 1003, 1099, 1186, 1311
Hpy188III	TCNNGA	4 cut(s)	110, 196, 207, 1122
Hpy8I	GTNNAC	1 cut(s)	130
Hpy99I	CGWCG	1 cut(s)	1007
HpyAV	CCTTC	5 cut(s)	41, 171, 765, 1088, 1104
HpyCH4III	ACNGT	1 cut(s)	538
HpyF10VI	GCNNNNNNNGC	4 cut(s)	281, 332, 1090, 1244
HpyF3I	CTNAG	5 cut(s)	135, 331, 409, 776, 912
Hsp92II	CATG	3 cut(s)	395, 835, 885
HspAI	GCGC	1 cut(s)	561
Kzo9I	GATC	5 cut(s)	423, 577, 751, 1058, 1141
LmnI	GCTCC	3 cut(s)	112, 440, 1168
Lsp1109I	GCAGC	6 cut(s)	245, 506, 616, 872, 974, 1061
LweI	GCATC	7 cut(s)	201, 313, 360, 616, 974, 1090, 1305
MaeI	CTAG	5 cut(s)	155, 366, 428, 633, 699
MaeIII	GTNAC	4 cut(s)	253, 385, 596, 743
MalI	GATC	5 cut(s)	425, 579, 753, 1060, 1143
MboI	GATC	5 cut(s)	423, 577, 751, 1058, 1141
MboII	GAAGA	8 cut(s)	137, 433, 537, 750, 1040, 1167, 1173, 1324
MfeI	CAATTG	2 cut(s)	471, 639
MflI	RGATCY	1 cut(s)	423
MhlI	GDGCHC	1 cut(s)	536
MlsI	TGGCCA	1 cut(s)	740
MluNI	TGGCCA	1 cut(s)	740
MlyI	GAGTC	2 cut(s)	77, 331
MmeI	TCCRAC	2 cut(s)	1026, 1036
Mox20I	TGGCCA	1 cut(s)	740
MscI	TGGCCA	1 cut(s)	740
MseI	TTAA	2 cut(s)	221, 1146
Msp20I	TGGCCA	1 cut(s)	740
MspA1I	CMGCKG	1 cut(s)	236
MunI	CAATTG	2 cut(s)	471, 639
Mva1269I	GAATGC	2 cut(s)	176, 619
MwoI	GCNNNNNNNGC	4 cut(s)	281, 332, 1090, 1244
NdeII	GATC	5 cut(s)	423, 577, 751, 1058, 1141
NlaIII	CATG	3 cut(s)	395, 835, 885
NlaIV	GGNNCC	1 cut(s)	1164
NmuCI	GTSAC	2 cut(s)	385, 596
NspI	RCATGY	1 cut(s)	885
NspV	TTCGAA	1 cut(s)	665
PaeI	GCATGC	1 cut(s)	885
PceI	AGGCCT	1 cut(s)	950
PctI	GAATGC	2 cut(s)	176, 619
PfeI	GAWTC	2 cut(s)	542, 1125
PkrI	GCNGC	8 cut(s)	235, 496, 631, 646, 887, 964, 1076, 1162
PleI	GAGTC	2 cut(s)	76, 331
PpsI	GAGTC	2 cut(s)	76, 331
PsiI	TTATAA	1 cut(s)	1014
PspFI	CCCAGC	1 cut(s)	270
PspN4I	GGNNCC	1 cut(s)	1164
PspPI	GGNCC	1 cut(s)	1170
PstI	CTGCAG	1 cut(s)	496
PstNI	CAGNNNCTG	1 cut(s)	236
PsuI	RGATCY	1 cut(s)	423
PvuII	CAGCTG	1 cut(s)	236
RsaI	GTAC	2 cut(s)	217, 1230
RsaNI	GTAC	2 cut(s)	216, 1229
SaqAI	TTAA	2 cut(s)	221, 1146
SatI	GCNGC	8 cut(s)	234, 495, 630, 645, 886, 963, 1075, 1161
Sau3AI	GATC	5 cut(s)	423, 577, 751, 1058, 1141
Sau96I	GGNCC	1 cut(s)	1170
SchI	GAGTC	2 cut(s)	77, 331
SduI	GDGCHC	1 cut(s)	536
SfaNI	GCATC	7 cut(s)	201, 313, 360, 616, 974, 1090, 1305
SfcI	CTRYAG	1 cut(s)	492
SfuI	TTCGAA	1 cut(s)	665
SphI	GCATGC	1 cut(s)	885
SseBI	AGGCCT	1 cut(s)	950
SsiI	CCGC	4 cut(s)	78, 296, 644, 1160
SspI	AATATT	2 cut(s)	454, 721
SspMI	CTAG	5 cut(s)	155, 366, 428, 633, 699
StuI	AGGCCT	1 cut(s)	950
TaaI	ACNGT	1 cut(s)	538
TaqI	TCGA	1 cut(s)	665
TatI	WGTACW	1 cut(s)	215
TauI	GCSGC	2 cut(s)	647, 1163
TfiI	GAWTC	2 cut(s)	542, 1125
Tru1I	TTAA	2 cut(s)	221, 1146
Tru9I	TTAA	2 cut(s)	221, 1146
TscAI	CASTG	4 cut(s)	130, 407, 496, 541
TseFI	GTSAC	2 cut(s)	385, 596
TseI	GCWGC	6 cut(s)	233, 494, 629, 885, 962, 1074
Tsp45I	GTSAC	2 cut(s)	385, 596
TspDTI	ATGAA	1 cut(s)	1123
TspGWI	ACGGA	2 cut(s)	110, 1155
TspRI	CASTG	4 cut(s)	130, 407, 496, 541
XapI	RAATTY	2 cut(s)	223, 661
XceI	RCATGY	1 cut(s)	885
XspI	CTAG	5 cut(s)	155, 366, 428, 633, 699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.