MD09G1112300.v1.1

The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Reverse (-)
8536247 .. 8539580
3334 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1112300.v1.1.491

Sequence Viewer

Length: 1620 bp
ATGATAAAAAATATATGGGGTAAAATACCCCGGAAACCCTCGAAATCATCGCAAAGCGATGCGTATAGTGACGGAGGGGCAAATGGGAATGGCCCAAATTCATCCCACAGCTCAAAATCGAGCTCTTCTTCGTCAAAATTTTCGAATTTGGGTTCGGGCAATTCTCGTTCGAGCAATGGGGTTCTTACCTCGCACTCCTCGGGCGGGGTTAAATCGAATCACTCAAAGAAATCAGCTCCCCTTGCAACTCAAGCAGGTCCTTTGTTGTCATCGGGTGCATACGAGGCTCTGCCGAGTTTCAAGGATGTTCCAAGTTCAGAAAGGCAGAATTATTTTTTTAAGAAGTTGAATATGTGTTGTGTGGTTTTTGATTTTAATGATCCCTCGAAGAATCTCAAGGAGAAGGACGTCAAGAGGCTAACTTTACTTGAACTTGTAGATTACATTTCATCAGTAACATCGAAGTTCAATGAGGTGGCAATGCAAGAGATTACAAAGATGGTGGCGACCAATCTGTTTCGTACATTTTCGTCTTCCAATCTTGATAACAAGGGTCCTGAAATTTATGACCAAGACGAGGAGGACCAAATGTTGGAACCAGCTTGGCCTCATCTGCAGATTGTGTATGAATGTCTATTAAGATTTGTGGCTTCTCCAGAGATCGATGCCAAGCTAGCTAAAAGATATATTGATCATTCATTTGTGTTGAAGTTGCTTGATTTGTTTAACTCTGAGGACCAAAGAGAGAGGGAATACCTAAAGACGATTCTCCATCGCATTTATGGGAAGTTCATGGTGCATCGACCGTTCATTAGGAAATCCATTAACAACATCTTCTTTTGGTTCATTTTTGAGACTGAGAAGCACAATGGGATTGCGGAATTGCTTGAAATCTTAGGCAGCATAATCAACGGTTTTGCTTTGCCTTTGAAGGAAGAGCACAAGCTGTTCCTTGTTCGTGCCTTGATTCCTCTTCACAAGCCCAAGTGTGTATCTATGTACCATCAGCAACTCTCATATTGCATTAGTCAGTTTGTGGAGAAAGATGCCAAGCTGGCGGATACAGTGATTCGAGGACTTTTGAAGTATTGGCCCATAACGAATAGTTCAAAGGAAGTTATGTTCCTTGGTGAATTGGAAGAGGTTCTGGAAGCTACCCAGCCATCAGAATTTCAGCGCTGCATGGTCCCCTTATTCCGTCAAATTGGTAACTGCCTAAACAGCTCACATTTTCAGGTAGCTGAACGTGCATTGTTTTTGTGGAATAACGATCACATAAGAAATTTGGTCACACAGAATCGCCAAGTGATTCTGCCAATAATCTTCCCAGCCCTGGAGAAAAACACACGGAGTCATTGGAATCAAGCTGTTCAGAGTTTGACACTGAATGTGAAAAAGATATTCTCAGATGTTGATCAAGAACTCTTTGATGAGTGCTTGGTCGGCTTCCAAGAAGATGAATCCAAAGAGAAAGAAACACAGGAGAAACGTGAATCAACGTGGAAACGCTTAGAAGATGTGGCTGCCTCCAAGGCTTTGGGCAATGAGGCTGTGCTTGTCTCAGGATTTACTTCCTCCATTGATACTAACCCACAACCACGGGCTTCTTCAGGTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Pfam Domains
Protein Families

Protein Analysis

540

Amino Acids

61.07

Weight (kDa)

7.62

Isoelectric Point (pI)

42.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B56 PF01603 97 - 507 3.1e-189 Protein phosphatase 2A regulatory B subunit (B56 family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 411
Acc36I ACCTGC 1 cut(s) 245
AccB7I CCANNNNNTGG 1 cut(s) 592
AciI CCGC 3 cut(s) 204, 878, 1058
AclWI GGATC 1 cut(s) 374
AcsI RAATTY 6 cut(s) 97, 137, 145, 561, 1169, 1282
AcuI CTGAAG 1 cut(s) 1593
AcyI GRCGYC 1 cut(s) 408
AfaI GTAC 2 cut(s) 523, 1001
AfeI AGCGCT 1 cut(s) 1178
AfiI CCNNNNNNNGG 4 cut(s) 204, 577, 592, 1333
AgsI TTSAA 9 cut(s) 301, 349, 431, 469, 709, 890, 931, 1084, 1110
AjnI CCWGG 1 cut(s) 1332
AloI GAACNNNNNNTCC 2 cut(s) 1106, 1138
Alw21I GWGCWC 2 cut(s) 125, 942
Alw26I GTCTC 2 cut(s) 848, 1564
AlwI GGATC 1 cut(s) 374
Ama87I CYCGRG 1 cut(s) 199
Aor51HI AGCGCT 1 cut(s) 1178
AoxI GGCC 3 cut(s) 91, 605, 1091
ApeKI GCWGC 3 cut(s) 900, 1179, 1523
ApoI RAATTY 6 cut(s) 97, 137, 145, 561, 1169, 1282
Asp700I GAANNNNTTC 1 cut(s) 1143
AspLEI GCGC 1 cut(s) 1179
AspS9I GGNCC 7 cut(s) 92, 257, 554, 583, 736, 1092, 1186
AsuC2I CCSGG 1 cut(s) 31
AsuHPI GGTGA 1 cut(s) 1142
AsuII TTCGAA 1 cut(s) 143
AsuNHI GCTAGC 1 cut(s) 673
AvaI CYCGRG 1 cut(s) 199
AvaII GGWCC 5 cut(s) 257, 554, 583, 736, 1186
BanII GRGCYC 1 cut(s) 125
BbsI GAAGAC 1 cut(s) 525
Bbv12I GWGCWC 2 cut(s) 125, 942
BbvI GCAGC 3 cut(s) 912, 1166, 1510
BccI CCATC 4 cut(s) 493, 780, 1011, 1171
BciT130I CCWGG 1 cut(s) 1334
BciVI GTATCC 1 cut(s) 1054
BclI TGATCA 2 cut(s) 691, 1414
BcnI CCSGG 1 cut(s) 31
BcoDI GTCTC 2 cut(s) 848, 1564
BfaI CTAG 1 cut(s) 674
BfmI CTRYAG 1 cut(s) 614
BfoI RGCGCY 1 cut(s) 1180
BfuAI ACCTGC 1 cut(s) 245
BfuI GTATCC 1 cut(s) 1054
BglI GCCNNNNNGGC 2 cut(s) 1055, 1532
BisI GCNGC 3 cut(s) 901, 1180, 1524
BlsI GCNGC 3 cut(s) 902, 1181, 1525
Bme1390I CCNGG 2 cut(s) 31, 1334
Bme18I GGWCC 5 cut(s) 257, 554, 583, 736, 1186
BmeT110I CYCGRG 1 cut(s) 199
BmgT120I GGNCC 7 cut(s) 92, 257, 554, 583, 736, 1092, 1186
BmiI GGNNCC 3 cut(s) 555, 597, 1188
BmrFI CCNGG 2 cut(s) 31, 1334
BmsI GCATC 4 cut(s) 49, 655, 808, 1036
BmtI GCTAGC 1 cut(s) 677
BpiI GAAGAC 1 cut(s) 525
BpmI CTGGAG 2 cut(s) 639, 1355
Bpu14I TTCGAA 1 cut(s) 143
BpuEI CTTGAG 2 cut(s) 234, 380
BpuMI CCSGG 1 cut(s) 31
Bsa29I ATCGAT 1 cut(s) 663
BsaBI GATNNNNATC 1 cut(s) 1413
BsaHI GRCGYC 1 cut(s) 408
BsaJI CCNNGG 6 cut(s) 29, 198, 1126, 1332, 1530, 1598
Bsc4I CCNNNNNNNGG 4 cut(s) 204, 577, 592, 1333
Bse3DI GCAATG 3 cut(s) 181, 486, 1549
Bse8I GATNNNNATC 1 cut(s) 1413
BseBI CCWGG 1 cut(s) 1334
BseCI ATCGAT 1 cut(s) 663
BseDI CCNNGG 6 cut(s) 29, 198, 1126, 1332, 1530, 1598
BseGI GGATG 2 cut(s) 101, 310
BseJI GATNNNNATC 1 cut(s) 1413
BseLI CCNNNNNNNGG 4 cut(s) 204, 577, 592, 1333
BseMI GCAATG 3 cut(s) 181, 486, 1549
BseMII CTCAG 4 cut(s) 723, 849, 1419, 1575
BseRI GAGGAG 2 cut(s) 187, 593
BseXI GCAGC 3 cut(s) 912, 1166, 1510
BseYI CCCAGC 2 cut(s) 1158, 1327
Bsh1285I CGRYCG 1 cut(s) 806
BshFI GGCC 3 cut(s) 93, 607, 1093
BshVI ATCGAT 1 cut(s) 663
BsiEI CGRYCG 1 cut(s) 806
BsiHKAI GWGCWC 2 cut(s) 125, 942
BsiHKCI CYCGRG 1 cut(s) 199
BsiSI CCGG 1 cut(s) 31
BslFI GGGAC 1 cut(s) 1172
BslI CCNNNNNNNGG 4 cut(s) 204, 577, 592, 1333
BsmAI GTCTC 2 cut(s) 848, 1564
BsmFI GGGAC 1 cut(s) 1172
BsnI GGCC 3 cut(s) 93, 607, 1093
BsoBI CYCGRG 1 cut(s) 199
Bsp119I TTCGAA 1 cut(s) 143
Bsp1286I GDGCHC 2 cut(s) 125, 942
Bsp143I GATC 5 cut(s) 379, 660, 691, 1270, 1414
BspACI CCGC 3 cut(s) 204, 878, 1058
BspANI GGCC 3 cut(s) 93, 607, 1093
BspCNI CTCAG 4 cut(s) 724, 850, 1418, 1574
BspDI ATCGAT 1 cut(s) 663
BspLI GGNNCC 3 cut(s) 555, 597, 1188
BspMAI CTGCAG 1 cut(s) 618
BspMI ACCTGC 1 cut(s) 245
BspOI GCTAGC 1 cut(s) 677
BspPI GGATC 1 cut(s) 374
BspQI GCTCTTC 2 cut(s) 130, 930
BspT104I TTCGAA 1 cut(s) 143
BsrDI GCAATG 3 cut(s) 181, 486, 1549
BssECI CCNNGG 6 cut(s) 29, 198, 1126, 1332, 1530, 1598
BssMI GATC 5 cut(s) 379, 660, 691, 1270, 1414
BssNI GRCGYC 1 cut(s) 408
BssT1I CCWWGG 2 cut(s) 1126, 1530
Bst2UI CCWGG 1 cut(s) 1334
Bst4CI ACNGT 3 cut(s) 807, 914, 1066
Bst6I CTCTTC 4 cut(s) 130, 930, 978, 1134
BstACI GRCGYC 1 cut(s) 408
BstBI TTCGAA 1 cut(s) 143
BstC8I GCNNGC 2 cut(s) 675, 1056
BstDEI CTNAG 6 cut(s) 732, 858, 895, 1405, 1510, 1561
BstDSI CCRYGG 1 cut(s) 1598
BstF5I GGATG 2 cut(s) 101, 310
BstH2I RGCGCY 1 cut(s) 1180
BstHHI GCGC 1 cut(s) 1179
BstKTI GATC 5 cut(s) 382, 663, 694, 1273, 1417
BstMAI GTCTC 2 cut(s) 848, 1564
BstMBI GATC 5 cut(s) 379, 660, 691, 1270, 1414
BstMCI CGRYCG 1 cut(s) 806
BstNI CCWGG 1 cut(s) 1334
BstSCI CCNGG 2 cut(s) 29, 1332
BstSFI CTRYAG 1 cut(s) 614
BstV1I GCAGC 3 cut(s) 912, 1166, 1510
BstV2I GAAGAC 1 cut(s) 525
BstXI CCANNNNNNTGG 1 cut(s) 1537
Bsu15I ATCGAT 1 cut(s) 663
BsuI GTATCC 1 cut(s) 1054
BsuRI GGCC 3 cut(s) 93, 607, 1093
BsuTUI ATCGAT 1 cut(s) 663
BtgI CCRYGG 1 cut(s) 1598
BtgZI GCGATG 3 cut(s) 33, 72, 758
BtsCI GGATG 2 cut(s) 101, 310
BtsIMutI CAGTG 2 cut(s) 1071, 1382
BveI ACCTGC 1 cut(s) 245
Cac8I GCNNGC 2 cut(s) 675, 1056
CfoI GCGC 1 cut(s) 1179
Cfr13I GGNCC 7 cut(s) 92, 257, 554, 583, 736, 1092, 1186
ClaI ATCGAT 1 cut(s) 663
Csp6I GTAC 2 cut(s) 522, 1000
CspCI CAANNNNNGTGG 2 cut(s) 483, 518
CviAII CATG 2 cut(s) 793, 1183
CviQI GTAC 2 cut(s) 522, 1000
DdeI CTNAG 6 cut(s) 732, 858, 895, 1405, 1510, 1561
DpnI GATC 5 cut(s) 381, 662, 693, 1272, 1416
DpnII GATC 5 cut(s) 379, 660, 691, 1270, 1414
Eam1104I CTCTTC 4 cut(s) 130, 930, 978, 1134
EarI CTCTTC 4 cut(s) 130, 930, 978, 1134
EciI GGCGGA 1 cut(s) 1073
Ecl136II GAGCTC 1 cut(s) 123
Eco130I CCWWGG 2 cut(s) 1126, 1530
Eco24I GRGCYC 1 cut(s) 125
Eco47I GGWCC 5 cut(s) 257, 554, 583, 736, 1186
Eco47III AGCGCT 1 cut(s) 1178
Eco53kI GAGCTC 1 cut(s) 123
Eco57I CTGAAG 1 cut(s) 1593
Eco88I CYCGRG 1 cut(s) 199
EcoICRI GAGCTC 1 cut(s) 123
EcoO109I RGGNCCY 2 cut(s) 257, 554
EcoRII CCWGG 1 cut(s) 1332
EcoT14I CCWWGG 2 cut(s) 1126, 1530
EcoT38I GRGCYC 1 cut(s) 125
ErhI CCWWGG 2 cut(s) 1126, 1530
FaeI CATG 2 cut(s) 796, 1186
FaqI GGGAC 1 cut(s) 1172
FatI CATG 2 cut(s) 792, 1182
FauI CCCGC 1 cut(s) 197
FbaI TGATCA 2 cut(s) 691, 1414
Fnu4HI GCNGC 3 cut(s) 901, 1180, 1524
FokI GGATG 2 cut(s) 88, 317
FriOI GRGCYC 1 cut(s) 125
Fsp4HI GCNGC 3 cut(s) 901, 1180, 1524
FspBI CTAG 1 cut(s) 674
GlaI GCGC 1 cut(s) 1178
GluI GCNGC 3 cut(s) 901, 1180, 1524
GsaI CCCAGC 2 cut(s) 1162, 1331
GsuI CTGGAG 2 cut(s) 639, 1355
HaeII RGCGCY 1 cut(s) 1180
HaeIII GGCC 3 cut(s) 93, 607, 1093
HapII CCGG 1 cut(s) 31
HhaI GCGC 1 cut(s) 1179
Hin1I GRCGYC 1 cut(s) 408
Hin1II CATG 2 cut(s) 796, 1186
Hin6I GCGC 1 cut(s) 1177
HinP1I GCGC 1 cut(s) 1177
HpaII CCGG 1 cut(s) 31
HphI GGTGA 1 cut(s) 1142
Hpy188I TCNGA 5 cut(s) 319, 733, 1168, 1374, 1408
Hpy188III TCNNGA 7 cut(s) 412, 542, 557, 656, 1148, 1418, 1563
HpyAV CCTTC 2 cut(s) 397, 925
HpyCH4III ACNGT 3 cut(s) 807, 914, 1066
HpyCH4IV ACGT 4 cut(s) 408, 1246, 1489, 1499
HpyCH4V TGCA 8 cut(s) 245, 278, 484, 616, 799, 1023, 1182, 1250
HpyF3I CTNAG 6 cut(s) 732, 858, 895, 1405, 1510, 1561
HpySE526I ACGT 4 cut(s) 408, 1246, 1489, 1499
Hsp92I GRCGYC 1 cut(s) 408
Hsp92II CATG 2 cut(s) 796, 1186
HspAI GCGC 1 cut(s) 1177
Ksp22I TGATCA 2 cut(s) 691, 1414
Kzo9I GATC 5 cut(s) 379, 660, 691, 1270, 1414
LguI GCTCTTC 2 cut(s) 130, 930
LmnI GCTCC 1 cut(s) 241
Lsp1109I GCAGC 3 cut(s) 912, 1166, 1510
LweI GCATC 4 cut(s) 49, 655, 808, 1036
MaeI CTAG 1 cut(s) 674
MaeII ACGT 4 cut(s) 408, 1246, 1489, 1499
MaeIII GTNAC 4 cut(s) 68, 454, 1208, 1288
MalI GATC 5 cut(s) 381, 662, 693, 1272, 1416
MboI GATC 5 cut(s) 379, 660, 691, 1270, 1414
MhlI GDGCHC 2 cut(s) 125, 942
MlyI GAGTC 1 cut(s) 1360
MmeI TCCRAC 1 cut(s) 573
MroXI GAANNNNTTC 1 cut(s) 1143
MseI TTAA 6 cut(s) 210, 339, 375, 638, 726, 825
MspI CCGG 1 cut(s) 31
MspR9I CCNGG 2 cut(s) 31, 1334
MvaI CCWGG 1 cut(s) 1334
NciI CCSGG 1 cut(s) 31
NdeII GATC 5 cut(s) 379, 660, 691, 1270, 1414
NheI GCTAGC 1 cut(s) 673
NlaIII CATG 2 cut(s) 796, 1186
NlaIV GGNNCC 3 cut(s) 555, 597, 1188
NmeAIII GCCGAG 1 cut(s) 318
NmuCI GTSAC 2 cut(s) 68, 1288
NspV TTCGAA 1 cut(s) 143
PciSI GCTCTTC 2 cut(s) 130, 930
PdmI GAANNNNTTC 1 cut(s) 1143
PflMI CCANNNNNTGG 1 cut(s) 592
PkrI GCNGC 3 cut(s) 902, 1181, 1525
PleI GAGTC 1 cut(s) 1359
PpsI GAGTC 1 cut(s) 1359
PpuMI RGGWCCY 2 cut(s) 257, 554
Psp124BI GAGCTC 1 cut(s) 125
Psp5II RGGWCCY 2 cut(s) 257, 554
Psp6I CCWGG 1 cut(s) 1332
PspFI CCCAGC 2 cut(s) 1158, 1327
PspGI CCWGG 1 cut(s) 1332
PspN4I GGNNCC 3 cut(s) 555, 597, 1188
PspPI GGNCC 7 cut(s) 92, 257, 554, 583, 736, 1092, 1186
PspPPI RGGWCCY 2 cut(s) 257, 554
PstI CTGCAG 1 cut(s) 618
RsaI GTAC 2 cut(s) 523, 1001
RsaNI GTAC 2 cut(s) 522, 1000
SacI GAGCTC 1 cut(s) 125
SapI GCTCTTC 2 cut(s) 130, 930
SaqAI TTAA 6 cut(s) 210, 339, 375, 638, 726, 825
SatI GCNGC 3 cut(s) 901, 1180, 1524
Sau3AI GATC 5 cut(s) 379, 660, 691, 1270, 1414
Sau96I GGNCC 7 cut(s) 92, 257, 554, 583, 736, 1092, 1186
SchI GAGTC 1 cut(s) 1360
ScrFI CCNGG 2 cut(s) 31, 1334
SduI GDGCHC 2 cut(s) 125, 942
SfaNI GCATC 4 cut(s) 49, 655, 808, 1036
SfcI CTRYAG 1 cut(s) 614
SfuI TTCGAA 1 cut(s) 143
SinI GGWCC 5 cut(s) 257, 554, 583, 736, 1186
SmlI CTYRAG 2 cut(s) 249, 395
SmoI CTYRAG 2 cut(s) 249, 395
SsiI CCGC 3 cut(s) 204, 878, 1058
SspMI CTAG 1 cut(s) 674
SstI GAGCTC 1 cut(s) 125
StyD4I CCNGG 2 cut(s) 29, 1332
StyI CCWWGG 2 cut(s) 1126, 1530
TaaI ACNGT 3 cut(s) 807, 914, 1066
TaiI ACGT 4 cut(s) 411, 1249, 1492, 1502
Tru1I TTAA 6 cut(s) 210, 339, 375, 638, 726, 825
Tru9I TTAA 6 cut(s) 210, 339, 375, 638, 726, 825
TscAI CASTG 2 cut(s) 1071, 1389
TseFI GTSAC 2 cut(s) 68, 1288
TseI GCWGC 3 cut(s) 900, 1179, 1523
Tsp45I GTSAC 2 cut(s) 68, 1288
TspDTI ATGAA 8 cut(s) 90, 438, 642, 687, 781, 799, 835, 1473
TspGWI ACGGA 3 cut(s) 87, 1187, 1363
TspRI CASTG 2 cut(s) 1071, 1389
Van91I CCANNNNNTGG 1 cut(s) 592
VpaK11BI GGWCC 5 cut(s) 257, 554, 583, 736, 1186
XapI RAATTY 6 cut(s) 97, 137, 145, 561, 1169, 1282
XcmI CCANNNNNNNNNTGG 1 cut(s) 779
XmnI GAANNNNTTC 1 cut(s) 1143
XspI CTAG 1 cut(s) 674
ZraI GACGTC 1 cut(s) 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.