Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0006499

Physical Location & Seq

Genomic Coordinates Forward (+)

14963319 .. 14971261

Gene Structure 7943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1175500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2436 bp

ATGAACTCCGGGACAGGGCAACTCCCTCCTAATCGGGTCGACCCGGAACAACCCAGTTCCTGCTTTTTGCAGAAGTTCAAGCTCTACGAAACCCGCTCGAATTTTTATTTGATAGGAAGAGACAAATGCAGAACCTTTTGGAGGGTTCTAAAGATTGACAGATTGGATCCATCTGAGTTAAACATTCTTGAAGATTCTGCAACATACTCGGATAATGAGTGCTACGACCTCCTGAAACGGATAGATGAAGGAAACAAGTCAATGGGTGGACTTAAACTTATCACCATTTGTTATGGAATTGTTGGGTTCGTGAAATTTCTGGGACCTTATTACATGATAATTATTACAAAAAGAAGGAAAATTGGCACTATTTGTGGCCATACGATCTATGCAATTTCCAAGAGCGAGATGATTCCAGTTCCAAATCCCACCGTGCGGTCAAAATTGGCCAATTCTAAGAATGATGAGAACAGATACAAGAAGCTCCTATGCACGGTGGACCTCACAAAGGACTTCTTTTTCAGCTATTCATACAATATTATGTCTAGTCTTCAAAAGAATATATGTGACAGGAAGACAGGATCGTCCCTTTATGAAACAATGTTTGTTTGGAATGAGTATTTGACACATGGAATCCGATATTGTCTGAAGAATACTCTCTGGACAGTTGCTTTAGTGTATGGATTCTTTAAACAGGTCAATCTTTCTGTATCTGGCAGGGATTTCAAGTTGACCCTCATTGCCAGACGTTCACGTCACTTTGCTGGCACCAGATATCTAAAGCGAGGTGTAAATGAGAAAGGTAAAGTAGCTAATGATGTTGAGACAGAGCAGCTTGTTATTGAAGGTGCTCCTGAAGGACACCCAGTACGAATAAGTTCTGTTGTGCAGCACCGAGGATCAATTCCCCTTTTCTGGTCCCAGGAAACCTCTCGACTAAATATCAAACCTGACATAATACTATCAAGGAAGGATCATAACTACGAGGCCACAAGACTTCATTTTGAAAATCTTGTCCAGAGATATGGAGACCCAATAATTATTTTGAATCTGATTAAGACAAATGAGAAGAAGCCTCGAGAAACAATTCTCCATGCAGAGTTTTCACATGCCATCAGATTTATCAATAGGAGTTTACCAAAAGAGAGTCGCCTGAGGTTTCTCCATTGGGATCTGCACAAACATGCCAGAAGCAAAGCTACCAATGTATTGGGACATCTCGGAAAAGTTGCTACGTATGCATTGGGATTAACCAGAATCTTCTATTGTCAAGTAAACCCCAATTTAAGGCCTGAGGGATTACCTGGCTTTGAGAAAAATGATGATGCCAATGACTGCTTGTCACATAGCTGTTCAAGTAAAGATGAGGATGCTGATAGCCGAGAAACAGAAATTAGCAATGGTAGTGATGGTGACGATGCAAGCATGAATTGCAATATCACAACCAGGATGTTTCAGAAAGGAGTCCTGAGGACCAATTGCATAGACTGTTTAGATCGCACAAATGTGGCCCAATATTCTTATGGGCTAGTTGCTCTTGGACATCAGCTGCATGCTTTAGGATTTATAGAATCTCCGGATATTGATCTGGATAACCCTCTGGCTGAGGACTTGATGAGAGTTTATGAGTCAATGGGTGACATACTTGCACTACAATATGGCGGTTCTCCAGCACATAATAAGATATTCTCTGAGACTAGAGGCCAGTGGAAGGCAGCAACACAGTCCCAGGAGTTCTTTAGAACTATACAGCGGTTCTACAGTAATGCTTACGTGGATGGTGTGAAACAAGATGCTATTAATGTATTCCTAGGTTACTTTCAACCACAACCGGGTAAACCACAACTGTGGGAATTGAATTCGGATCAGCAATACAATGTTGGGAGGTCGTTTATCAAAAGGTCACTATCCGAGGGCCATATTCTCGGTGAAAGTGATTCACCTATGGCAAGCACAGATGTTGGGTACAATCAACCTTTGTCTGAAATCGCACAAGGAAGTAACAGAGCAATTTCAGAGTCAGCACCAGCAATCTCAACTTGCGAAAGTGAGATATCCTATTGCAGGTTTACCCCCTCAATGCCTTGCAAGCAGCTTTTTGGTGGGTTGCAAGAAGACGAATGTCTCCAGAGTGATCATATCATTTATGATGAACACGATGATGATTGCAACTTGTCAAATTTTCTGGATGTGGATTGGTTGTCCACATCAGGAAATTCCTGTGAAGAAGAATGTGGAAGGTCTATGACCAGCCTTTCCTCGGAGAATCTTGTGAATGGACCAAAGATTGAAACGAGCACATCTGCAAGTGAATCTGGATCCACGAGAAAGGGAAAAGAGCAATACGAATCAGAGGTCAGTCGTGATAATGTGACACCCACATATTCAGAGAGCTTCATGGACTGGGTAGCTAATGGGGAGTTGCTGTTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0005794 GO:0005811 GO:0006629 GO:0006644 GO:0006650 GO:0006661 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0010008 GO:0012505 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0031090 GO:0031410 GO:0031901 GO:0031902 GO:0031982 GO:0031984 GO:0034593 GO:0034595 GO:0036092 GO:0042578 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043813 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046474 GO:0046486 GO:0046488 GO:0052866 GO:0071704 GO:0090407 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0106018 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Syja_N

Protein Analysis

812

Amino Acids

91.92

Weight (kDa)

6.17

Isoelectric Point (pI)

48.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syja_N	PF02383	98 - 396	1e-83	SacI homology domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14205 AT3G14205
fragaria_vesca	FvH4_6g35480 FvH4_6g35480 FvH4_6g35480
malus_domestica	MD09G1175500.v1.1 MD17G1151300.v1.1
prunus_persica	Prupe.3G034500_v2.0.a1
pyrus_communis	pycom09g09320 pycom17g14460
rosa_chinensis	RchiOBHm_Chr2g0147031
rosa_laevigata	RLG00000020240
rosa_multiflora	Rmu_co8447827.1_g000001 Rmu_sc0001880.1_g000033 Rmu_sc0036715.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099750
rosa_rugosa	Rorug02G0398100 Rorug02G0398100 Rorug02G0398200
rosa_samantha	Rh2AG455200 Rh2BG467600 Rh2CG442600 Rh2DG476800 Rh2DG476900
rosa_wichuraiana	Rw2G037140 Rw2G037240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	583, 753
Acc36I	ACCTGC	1 cut(s)	2055
AccB1I	GGYRCC	1 cut(s)	767
AccBSI	CCGCTC	1 cut(s)	96
AccI	GTMKAC	1 cut(s)	39
AccIII	TCCGGA	1 cut(s)	1576
AciI	CCGC	4 cut(s)	94, 436, 1662, 1753
AclWI	GGATC	9 cut(s)	161, 174, 589, 907, 981, 1179, 1872, 2313, 2326
AcoI	YGGCCR	2 cut(s)	376, 447
AcsI	RAATTY	5 cut(s)	100, 314, 1858, 2179, 2215
AcuI	CTGAAG	2 cut(s)	668, 876
AfaI	GTAC	2 cut(s)	870, 1967
AhdI	GACNNNNNGTC	1 cut(s)	1339
AjiI	CACGTC	1 cut(s)	755
AjnI	CCWGG	4 cut(s)	921, 1303, 1445, 1728
AleI	CACNNNNGTG	2 cut(s)	1505, 1846
Alw21I	GWGCWC	2 cut(s)	853, 2300
Alw26I	GTCTC	5 cut(s)	114, 818, 1023, 1688, 2129
AlwI	GGATC	9 cut(s)	161, 174, 589, 907, 981, 1179, 1872, 2313, 2326
AlwNI	CAGNNNCTG	1 cut(s)	60
Ama87I	CYCGRG	1 cut(s)	1077
Aor13HI	TCCGGA	1 cut(s)	1576
AoxI	GGCC	7 cut(s)	376, 447, 987, 1289, 1509, 1702, 1915
ApeKI	GCWGC	5 cut(s)	832, 889, 1549, 1715, 2092
ApoI	RAATTY	5 cut(s)	100, 314, 1858, 2179, 2215
ArsI	GACNNNNNNTTYG	2 cut(s)	2340, 2372
AseI	ATTAAT	1 cut(s)	1800
Asp700I	GAANNNNTTC	2 cut(s)	877, 1086
AspA2I	CCTAGG	1 cut(s)	1810
AspS9I	GGNCC	7 cut(s)	323, 499, 918, 1473, 1510, 1915, 2279
AsuC2I	CCSGG	3 cut(s)	10, 44, 1833
AsuHPI	GGTGA	5 cut(s)	274, 1424, 1649, 1932, 1940
AvaI	CYCGRG	1 cut(s)	1077
AvaII	GGWCC	5 cut(s)	323, 499, 918, 1473, 2279
AvrII	CCTAGG	1 cut(s)	1810
AxyI	CCTNAGG	3 cut(s)	1154, 1293, 1469
BalI	TGGCCA	2 cut(s)	378, 449
BamHI	GGATCC	2 cut(s)	166, 2318
BanI	GGYRCC	1 cut(s)	767
BarI	GAAGNNNNNNTAC	2 cut(s)	1183, 1215
BauI	CACGAG	1 cut(s)	2323
BbsI	GAAGAC	3 cut(s)	542, 581, 2121
Bbv12I	GWGCWC	2 cut(s)	853, 2300
BbvCI	CCTCAGC	1 cut(s)	1605
BbvI	GCAGC	5 cut(s)	844, 901, 1536, 1727, 2104
BccI	CCATC	4 cut(s)	178, 1121, 1403, 1772
BcgI	CGANNNNNNTGC	2 cut(s)	189, 223
BciT130I	CCWGG	4 cut(s)	923, 1305, 1447, 1730
BclI	TGATCA	1 cut(s)	2134
BcnI	CCSGG	3 cut(s)	10, 44, 1833
BcoDI	GTCTC	5 cut(s)	114, 818, 1023, 1688, 2129
BfaI	CTAG	4 cut(s)	546, 1529, 1698, 1811
BfmI	CTRYAG	1 cut(s)	1759
BfuAI	ACCTGC	1 cut(s)	2055
BisI	GCNGC	5 cut(s)	833, 890, 1550, 1716, 2093
BlnI	CCTAGG	1 cut(s)	1810
BlsI	GCNGC	5 cut(s)	834, 891, 1551, 1717, 2094
Bme1390I	CCNGG	7 cut(s)	10, 44, 923, 1305, 1447, 1730, 1833
Bme18I	GGWCC	5 cut(s)	323, 499, 918, 1473, 2279
BmeRI	GACNNNNNGTC	1 cut(s)	1339
BmeT110I	CYCGRG	1 cut(s)	1077
BmgBI	CACGTC	1 cut(s)	755
BmgT120I	GGNCC	7 cut(s)	323, 499, 918, 1473, 1510, 1915, 2279
BmiI	GGNNCC	5 cut(s)	168, 324, 769, 920, 2320
BmrFI	CCNGG	7 cut(s)	10, 44, 923, 1305, 1447, 1730, 1833
BmrI	ACTGGG	3 cut(s)	48, 860, 2413
BmsI	GCATC	4 cut(s)	1315, 1360, 1408, 1783
BmuI	ACTGGG	3 cut(s)	48, 860, 2413
BoxI	GACNNNNGTC	1 cut(s)	2121
BpiI	GAAGAC	3 cut(s)	542, 581, 2121
BpmI	CTGGAG	2 cut(s)	1653, 2111
Bpu10I	CCTNAGC	1 cut(s)	1605
BpuMI	CCSGG	3 cut(s)	10, 44, 1833
BsaAI	YACGTR	2 cut(s)	1236, 1774
BsaBI	GATNNNNATC	1 cut(s)	1584
BsaI	GGTCTC	1 cut(s)	1023
BsaJI	CCNNGG	6 cut(s)	895, 921, 1728, 1810, 1911, 2259
BsaWI	WCCGGW	1 cut(s)	1576
BsaXI	ACNNNNNCTCC	1 cut(s)	2411
Bse1I	ACTGG	5 cut(s)	54, 416, 866, 1705, 2408
Bse21I	CCTNAGG	3 cut(s)	1154, 1293, 1469
Bse3DI	GCAATG	2 cut(s)	738, 1405
Bse8I	GATNNNNATC	1 cut(s)	1584
BseAI	TCCGGA	1 cut(s)	1576
BseBI	CCWGG	4 cut(s)	923, 1305, 1447, 1730
BseDI	CCNNGG	6 cut(s)	895, 921, 1728, 1810, 1911, 2259
BseGI	GGATG	4 cut(s)	1375, 1455, 1783, 2194
BseJI	GATNNNNATC	1 cut(s)	1584
BseMI	GCAATG	2 cut(s)	738, 1405
BseMII	CTCAG	6 cut(s)	165, 1145, 1284, 1460, 1596, 1683
BseNI	ACTGG	5 cut(s)	54, 416, 866, 1705, 2408
BseXI	GCAGC	5 cut(s)	844, 901, 1536, 1727, 2104
BsgI	GTGCAG	2 cut(s)	908, 1160
BshFI	GGCC	7 cut(s)	378, 449, 989, 1291, 1511, 1704, 1917
BshNI	GGYRCC	1 cut(s)	767
BsiHKAI	GWGCWC	2 cut(s)	853, 2300
BsiHKCI	CYCGRG	1 cut(s)	1077
BsiSI	CCGG	4 cut(s)	9, 44, 1577, 1832
BslFI	GGGAC	6 cut(s)	25, 336, 571, 904, 1227, 1711
BsmAI	GTCTC	5 cut(s)	114, 818, 1023, 1688, 2129
BsmFI	GGGAC	6 cut(s)	25, 336, 571, 904, 1227, 1711
BsnI	GGCC	7 cut(s)	378, 449, 989, 1291, 1511, 1704, 1917
Bso31I	GGTCTC	1 cut(s)	1023
BsoBI	CYCGRG	1 cut(s)	1077
Bsp1286I	GDGCHC	2 cut(s)	853, 2300
Bsp13I	TCCGGA	1 cut(s)	1576
BspACI	CCGC	4 cut(s)	94, 436, 1662, 1753
BspANI	GGCC	7 cut(s)	378, 449, 989, 1291, 1511, 1704, 1917
BspCNI	CTCAG	6 cut(s)	166, 1146, 1285, 1461, 1597, 1684
BspEI	TCCGGA	1 cut(s)	1576
BspLI	GGNNCC	5 cut(s)	168, 324, 769, 920, 2320
BspMI	ACCTGC	1 cut(s)	2055
BspPI	GGATC	9 cut(s)	161, 174, 589, 907, 981, 1179, 1872, 2313, 2326
BspT107I	GGYRCC	1 cut(s)	767
BspTNI	GGTCTC	1 cut(s)	1023
BsrBI	CCGCTC	1 cut(s)	96
BsrDI	GCAATG	2 cut(s)	738, 1405
BsrI	ACTGG	5 cut(s)	54, 416, 866, 1705, 2408
BssECI	CCNNGG	6 cut(s)	895, 921, 1728, 1810, 1911, 2259
BssSI	CACGAG	1 cut(s)	2323
BssT1I	CCWWGG	1 cut(s)	1810
Bst2BI	CACGAG	1 cut(s)	2323
Bst2UI	CCWGG	4 cut(s)	923, 1305, 1447, 1730
Bst4CI	ACNGT	7 cut(s)	433, 496, 667, 1490, 1725, 1763, 1848
Bst6I	CTCTTC	1 cut(s)	112
BstAPI	GCANNNNNTGC	1 cut(s)	1431
BstBAI	YACGTR	2 cut(s)	1236, 1774
BstC8I	GCNNGC	5 cut(s)	766, 1423, 1554, 1951, 2090
BstDEI	CTNAG	7 cut(s)	174, 456, 1154, 1293, 1469, 1605, 1692
BstENI	CCTNNNNNAGG	3 cut(s)	139, 506, 2062
BstF5I	GGATG	4 cut(s)	1375, 1455, 1783, 2194
BstMAI	GTCTC	5 cut(s)	114, 818, 1023, 1688, 2129
BstMWI	GCNNNNNNNGC	3 cut(s)	1238, 1431, 2089
BstNI	CCWGG	4 cut(s)	923, 1305, 1447, 1730
BstNSI	RCATGY	3 cut(s)	1112, 1187, 1556
BstPAI	GACNNNNGTC	1 cut(s)	2121
BstSCI	CCNGG	7 cut(s)	8, 42, 921, 1303, 1445, 1728, 1831
BstSFI	CTRYAG	1 cut(s)	1759
BstSNI	TACGTA	1 cut(s)	1236
BstV1I	GCAGC	5 cut(s)	844, 901, 1536, 1727, 2104
BstV2I	GAAGAC	3 cut(s)	542, 581, 2121
BstX2I	RGATCY	3 cut(s)	166, 1171, 2318
BstXI	CCANNNNNNTGG	3 cut(s)	1025, 1210, 1848
BstYI	RGATCY	3 cut(s)	166, 1171, 2318
Bsu36I	CCTNAGG	3 cut(s)	1154, 1293, 1469
BsuRI	GGCC	7 cut(s)	378, 449, 989, 1291, 1511, 1704, 1917
BtrI	CACGTC	1 cut(s)	755
BtsCI	GGATG	4 cut(s)	1375, 1455, 1783, 2194
BtsIMutI	CAGTG	1 cut(s)	1712
BveI	ACCTGC	1 cut(s)	2055
Cac8I	GCNNGC	5 cut(s)	766, 1423, 1554, 1951, 2090
CaiI	CAGNNNCTG	1 cut(s)	60
Cfr13I	GGNCC	7 cut(s)	323, 499, 918, 1473, 1510, 1915, 2279
Csp6I	GTAC	2 cut(s)	869, 1966
CviAII	CATG	8 cut(s)	334, 629, 1094, 1109, 1184, 1426, 1553, 2398
CviQI	GTAC	2 cut(s)	869, 1966
DdeI	CTNAG	7 cut(s)	174, 456, 1154, 1293, 1469, 1605, 1692
DraI	TTTAAA	1 cut(s)	691
DrdI	GACNNNNNNGTC	2 cut(s)	583, 753
DriI	GACNNNNNGTC	1 cut(s)	1339
DseDI	GACNNNNNNGTC	2 cut(s)	583, 753
EaeI	YGGCCR	2 cut(s)	376, 447
Eam1104I	CTCTTC	1 cut(s)	112
Eam1105I	GACNNNNNGTC	1 cut(s)	1339
EarI	CTCTTC	1 cut(s)	112
Eco105I	TACGTA	1 cut(s)	1236
Eco130I	CCWWGG	1 cut(s)	1810
Eco147I	AGGCCT	1 cut(s)	1291
Eco31I	GGTCTC	1 cut(s)	1023
Eco32I	GATATC	2 cut(s)	776, 2055
Eco47I	GGWCC	5 cut(s)	323, 499, 918, 1473, 2279
Eco57I	CTGAAG	2 cut(s)	668, 876
Eco81I	CCTNAGG	3 cut(s)	1154, 1293, 1469
Eco88I	CYCGRG	1 cut(s)	1077
EcoNI	CCTNNNNNAGG	3 cut(s)	139, 506, 2062
EcoO109I	RGGNCCY	1 cut(s)	323
EcoRI	GAATTC	1 cut(s)	1858
EcoRII	CCWGG	4 cut(s)	921, 1303, 1445, 1728
EcoRV	GATATC	2 cut(s)	776, 2055
EcoT14I	CCWWGG	1 cut(s)	1810
EcoT22I	ATGCAT	1 cut(s)	1243
ErhI	CCWWGG	1 cut(s)	1810
FaeI	CATG	8 cut(s)	337, 632, 1097, 1112, 1187, 1429, 1556, 2401
FalI	AAGNNNNNCTT	2 cut(s)	500, 532
FaqI	GGGAC	6 cut(s)	25, 336, 571, 904, 1227, 1711
FatI	CATG	8 cut(s)	333, 628, 1093, 1108, 1183, 1425, 1552, 2397
FauI	CCCGC	1 cut(s)	101
FbaI	TGATCA	1 cut(s)	2134
FblI	GTMKAC	1 cut(s)	39
Fnu4HI	GCNGC	5 cut(s)	833, 890, 1550, 1716, 2093
FokI	GGATG	4 cut(s)	1382, 1462, 1790, 2201
Fsp4HI	GCNGC	5 cut(s)	833, 890, 1550, 1716, 2093
FspBI	CTAG	4 cut(s)	546, 1529, 1698, 1811
GluI	GCNGC	5 cut(s)	833, 890, 1550, 1716, 2093
GsuI	CTGGAG	2 cut(s)	1653, 2111
HaeIII	GGCC	7 cut(s)	378, 449, 989, 1291, 1511, 1704, 1917
HapII	CCGG	4 cut(s)	9, 44, 1577, 1832
Hin1II	CATG	8 cut(s)	337, 632, 1097, 1112, 1187, 1429, 1556, 2401
HincII	GTYRAC	2 cut(s)	40, 732
HindII	GTYRAC	2 cut(s)	40, 732
HpaII	CCGG	4 cut(s)	9, 44, 1577, 1832
HphI	GGTGA	5 cut(s)	274, 1424, 1649, 1932, 1940
HpyAV	CCTTC	7 cut(s)	242, 348, 839, 851, 964, 1705, 2232
HpyCH4III	ACNGT	7 cut(s)	433, 496, 667, 1490, 1725, 1763, 1848
HpyCH4IV	ACGT	4 cut(s)	748, 754, 1235, 1773
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1238, 1431, 2089
HpyF3I	CTNAG	7 cut(s)	174, 456, 1154, 1293, 1469, 1605, 1692
HpySE526I	ACGT	4 cut(s)	748, 754, 1235, 1773
Hsp92II	CATG	8 cut(s)	337, 632, 1097, 1112, 1187, 1429, 1556, 2401
Kpn2I	TCCGGA	1 cut(s)	1576
Ksp22I	TGATCA	1 cut(s)	2134
LmnI	GCTCC	2 cut(s)	489, 856
Lsp1109I	GCAGC	5 cut(s)	844, 901, 1536, 1727, 2104
LweI	GCATC	4 cut(s)	1315, 1360, 1408, 1783
MaeI	CTAG	4 cut(s)	546, 1529, 1698, 1811
MaeII	ACGT	4 cut(s)	748, 754, 1235, 1773
MaeIII	GTNAC	9 cut(s)	566, 755, 1341, 1412, 1637, 1814, 1902, 2000, 2371
MbiI	CCGCTC	1 cut(s)	96
MfeI	CAATTG	1 cut(s)	1477
MflI	RGATCY	3 cut(s)	166, 1171, 2318
MhlI	GDGCHC	2 cut(s)	853, 2300
MlsI	TGGCCA	2 cut(s)	378, 449
MluNI	TGGCCA	2 cut(s)	378, 449
MlyI	GAGTC	4 cut(s)	1156, 1473, 1637, 2027
Mox20I	TGGCCA	2 cut(s)	378, 449
Mph1103I	ATGCAT	1 cut(s)	1243
MroI	TCCGGA	1 cut(s)	1576
MroXI	GAANNNNTTC	2 cut(s)	877, 1086
MscI	TGGCCA	2 cut(s)	378, 449
MseI	TTAA	7 cut(s)	179, 273, 690, 1056, 1250, 1286, 1800
MslI	CAYNNNNRTG	4 cut(s)	1182, 1505, 1846, 2160
Msp20I	TGGCCA	2 cut(s)	378, 449
MspA1I	CMGCKG	2 cut(s)	1549, 1753
MspI	CCGG	4 cut(s)	9, 44, 1577, 1832
MspR9I	CCNGG	7 cut(s)	10, 44, 923, 1305, 1447, 1730, 1833
MunI	CAATTG	1 cut(s)	1477
MvaI	CCWGG	4 cut(s)	923, 1305, 1447, 1730
MwoI	GCNNNNNNNGC	3 cut(s)	1238, 1431, 2089
NciI	CCSGG	3 cut(s)	10, 44, 1833
NlaIII	CATG	8 cut(s)	337, 632, 1097, 1112, 1187, 1429, 1556, 2401
NlaIV	GGNNCC	5 cut(s)	168, 324, 769, 920, 2320
NmeAIII	GCCGAG	1 cut(s)	1406
NmuCI	GTSAC	7 cut(s)	566, 755, 1341, 1412, 1637, 1902, 2371
NsiI	ATGCAT	1 cut(s)	1243
NspI	RCATGY	3 cut(s)	1112, 1187, 1556
OliI	CACNNNNGTG	2 cut(s)	1505, 1846
PaeI	GCATGC	1 cut(s)	1556
PaeR7I	CTCGAG	1 cut(s)	1077
PceI	AGGCCT	1 cut(s)	1291
PdmI	GAANNNNTTC	2 cut(s)	877, 1086
PfoI	TCCNGGA	1 cut(s)	8
PkrI	GCNGC	5 cut(s)	834, 891, 1551, 1717, 2094
PleI	GAGTC	4 cut(s)	1155, 1472, 1636, 2026
PpsI	GAGTC	4 cut(s)	1155, 1472, 1636, 2026
Ppu21I	YACGTR	2 cut(s)	1236, 1774
PpuMI	RGGWCCY	1 cut(s)	323
PshAI	GACNNNNGTC	1 cut(s)	2121
PshBI	ATTAAT	1 cut(s)	1800
Psp5II	RGGWCCY	1 cut(s)	323
Psp6I	CCWGG	4 cut(s)	921, 1303, 1445, 1728
PspGI	CCWGG	4 cut(s)	921, 1303, 1445, 1728
PspN4I	GGNNCC	5 cut(s)	168, 324, 769, 920, 2320
PspPI	GGNCC	7 cut(s)	323, 499, 918, 1473, 1510, 1915, 2279
PspPPI	RGGWCCY	1 cut(s)	323
PstNI	CAGNNNCTG	1 cut(s)	60
PsuI	RGATCY	3 cut(s)	166, 1171, 2318
PvuII	CAGCTG	1 cut(s)	1549
RsaI	GTAC	2 cut(s)	870, 1967
RsaNI	GTAC	2 cut(s)	869, 1966
RseI	CAYNNNNRTG	4 cut(s)	1182, 1505, 1846, 2160
SalI	GTCGAC	1 cut(s)	38
SaqAI	TTAA	7 cut(s)	179, 273, 690, 1056, 1250, 1286, 1800
SatI	GCNGC	5 cut(s)	833, 890, 1550, 1716, 2093
Sau96I	GGNCC	7 cut(s)	323, 499, 918, 1473, 1510, 1915, 2279
SchI	GAGTC	4 cut(s)	1156, 1473, 1637, 2027
ScrFI	CCNGG	7 cut(s)	10, 44, 923, 1305, 1447, 1730, 1833
SduI	GDGCHC	2 cut(s)	853, 2300
SfaNI	GCATC	4 cut(s)	1315, 1360, 1408, 1783
SfcI	CTRYAG	1 cut(s)	1759
Sfr274I	CTCGAG	1 cut(s)	1077
SinI	GGWCC	5 cut(s)	323, 499, 918, 1473, 2279
SlaI	CTCGAG	1 cut(s)	1077
SmiMI	CAYNNNNRTG	4 cut(s)	1182, 1505, 1846, 2160
SmlI	CTYRAG	1 cut(s)	1077
SmoI	CTYRAG	1 cut(s)	1077
SnaBI	TACGTA	1 cut(s)	1236
SphI	GCATGC	1 cut(s)	1556
SseBI	AGGCCT	1 cut(s)	1291
SsiI	CCGC	4 cut(s)	94, 436, 1662, 1753
SspI	AATATT	2 cut(s)	538, 1517
SspMI	CTAG	4 cut(s)	546, 1529, 1698, 1811
StuI	AGGCCT	1 cut(s)	1291
StyD4I	CCNGG	7 cut(s)	8, 42, 921, 1303, 1445, 1728, 1831
StyI	CCWWGG	1 cut(s)	1810
TaaI	ACNGT	7 cut(s)	433, 496, 667, 1490, 1725, 1763, 1848
TaiI	ACGT	4 cut(s)	751, 757, 1238, 1776
TaqI	TCGA	4 cut(s)	39, 98, 934, 1078
Tru1I	TTAA	7 cut(s)	179, 273, 690, 1056, 1250, 1286, 1800
Tru9I	TTAA	7 cut(s)	179, 273, 690, 1056, 1250, 1286, 1800
TscAI	CASTG	1 cut(s)	1712
TseFI	GTSAC	7 cut(s)	566, 755, 1341, 1412, 1637, 1902, 2371
TseI	GCWGC	5 cut(s)	832, 889, 1549, 1715, 2092
Tsp45I	GTSAC	7 cut(s)	566, 755, 1341, 1412, 1637, 1902, 2371
TspDTI	ATGAA	8 cut(s)	17, 261, 519, 609, 989, 1442, 2166, 2386
TspGWI	ACGGA	1 cut(s)	253
TspRI	CASTG	1 cut(s)	1712
VpaK11BI	GGWCC	5 cut(s)	323, 499, 918, 1473, 2279
VspI	ATTAAT	1 cut(s)	1800
XagI	CCTNNNNNAGG	3 cut(s)	139, 506, 2062
XapI	RAATTY	5 cut(s)	100, 314, 1858, 2179, 2215
XceI	RCATGY	3 cut(s)	1112, 1187, 1556
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1520
XhoI	CTCGAG	1 cut(s)	1077
XmaJI	CCTAGG	1 cut(s)	1810
XmiI	GTMKAC	1 cut(s)	39
XmnI	GAANNNNTTC	2 cut(s)	877, 1086
XspI	CTAG	4 cut(s)	546, 1529, 1698, 1811
Zsp2I	ATGCAT	1 cut(s)	1243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.