Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006499

Physical Location & Seq

Genomic Coordinates Reverse (-)

50841446 .. 50842599

Gene Structure 1154 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0398100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGAGCCGAGCAGAAATGGTCCTAAAAGAAACCATGCACAAAAGCAAGGTCTTCTATGACAAAACTCTTCAAAACCTCAAAAGCTTCTTCTGTGGAGGATACAAAAAACTACCCAAATCCCTTTCCTTGAATCCTTGCTTTTGTGGGAGTGACCTGAAATATTACCCAAGAGATGAGTTTTACACTGATTATTATGATGAGTGGGAGTCTACTATAGATGAGGTGAAGAAGAGAGATAGTACATCAAAAGAAACAATCAAGGATGAGGATCCATGTAGTGACAGCTTCATGATGTTTCCAAAGCAAAGTCCTAAGAAGAACAAACAAGAAGGGGGATTGTTAAGGGATAAGAAGTCTAGTGGAGGCTCTCGTGATCTTGGAAAAGGAAAAGACCAGTTATCATTCCAGAACATGAATGGTAATAGAGGGAGCAATGTTTTAGCGAAAAGGATGAAGGAGTTTGAAATGGTGGATGCAGGTGATGTGGAGCAGGTGTTGGATGTAGAAGAGGCACTTCACTACTACTCTCGCCTCAAAAGTCCGGTGTACCTTGACATTGTTGACAAGTTTTTCTTAGATATGTACTCAGATTTCTCCGTCCCACCAGCACCATCGATCAGCATCAACAATTCAAAGCAGAGAGTTGGCTCCCGGAGACTTGGCTCCCGAAGACTTGGCTCCATTAGGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0005794 GO:0005811 GO:0006629 GO:0006644 GO:0006650 GO:0006661 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0010008 GO:0012505 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0031090 GO:0031410 GO:0031901 GO:0031902 GO:0031982 GO:0031984 GO:0034593 GO:0034595 GO:0036092 GO:0042578 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043813 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046474 GO:0046486 GO:0046488 GO:0052866 GO:0071704 GO:0090407 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0106018 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Syja_N

Protein Analysis

230

Amino Acids

26.46

Weight (kDa)

8.96

Isoelectric Point (pI)

53.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14205 AT3G14205
fragaria_vesca	FvH4_6g35480 FvH4_6g35480 FvH4_6g35480
malus_domestica	MD09G1175500.v1.1 MD17G1151300.v1.1
prunus_persica	Prupe.3G034500_v2.0.a1
pyrus_communis	pycom09g09320 pycom17g14460
rosa_chinensis	RchiOBHm_Chr2g0147031
rosa_laevigata	RLG00000020240
rosa_multiflora	Rmu_co8447827.1_g000001 Rmu_sc0001880.1_g000033 Rmu_sc0036715.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099750
rosa_rugosa	Rorug02G0398100 Rorug02G0398100 Rorug02G0398200
rosa_samantha	Rh2AG455200 Rh2BG467600 Rh2CG442600 Rh2DG476800 Rh2DG476900
rosa_wichuraiana	Rw2G037140 Rw2G037240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	467, 481
Acc36I	ACCTGC	2 cut(s)	467, 481
AccI	GTMKAC	1 cut(s)	209
AclWI	GGATC	2 cut(s)	263, 276
AfaI	GTAC	3 cut(s)	241, 548, 584
AgsI	TTSAA	4 cut(s)	71, 130, 464, 633
AluBI	AGCT	2 cut(s)	84, 285
AluI	AGCT	2 cut(s)	84, 285
Alw26I	GTCTC	1 cut(s)	649
AlwI	GGATC	2 cut(s)	263, 276
ArsI	GACNNNNNNTTYG	2 cut(s)	33, 65
AspS9I	GGNCC	1 cut(s)	19
AsuC2I	CCSGG	1 cut(s)	652
AsuHPI	GGTGA	2 cut(s)	235, 491
AvaII	GGWCC	1 cut(s)	19
BamHI	GGATCC	1 cut(s)	268
BauI	CACGAG	1 cut(s)	369
BbsI	GAAGAC	2 cut(s)	43, 676
BccI	CCATC	1 cut(s)	619
BciVI	GTATCC	1 cut(s)	92
BcnI	CCSGG	1 cut(s)	652
BcoDI	GTCTC	1 cut(s)	649
BfaI	CTAG	1 cut(s)	357
BfmI	CTRYAG	1 cut(s)	213
BfuAI	ACCTGC	2 cut(s)	467, 481
BfuI	GTATCC	1 cut(s)	92
Bme1390I	CCNGG	1 cut(s)	652
Bme18I	GGWCC	1 cut(s)	19
BmgT120I	GGNCC	1 cut(s)	19
BmiI	GGNNCC	4 cut(s)	270, 649, 664, 679
BmrFI	CCNGG	1 cut(s)	652
BmsI	GCATC	2 cut(s)	463, 630
BpiI	GAAGAC	2 cut(s)	43, 676
BpuMI	CCSGG	1 cut(s)	652
Bsa29I	ATCGAT	1 cut(s)	614
BsaBI	GATNNNNATC	2 cut(s)	267, 620
BsaWI	WCCGGW	1 cut(s)	541
BsaXI	ACNNNNNCTCC	2 cut(s)	479, 509
Bse1I	ACTGG	1 cut(s)	394
Bse3DI	GCAATG	1 cut(s)	439
Bse8I	GATNNNNATC	2 cut(s)	267, 620
BseCI	ATCGAT	1 cut(s)	614
BseGI	GGATG	4 cut(s)	268, 456, 478, 505
BseJI	GATNNNNATC	2 cut(s)	267, 620
BseMI	GCAATG	1 cut(s)	439
BseMII	CTCAG	1 cut(s)	600
BseNI	ACTGG	1 cut(s)	394
BshVI	ATCGAT	1 cut(s)	614
BsiSI	CCGG	2 cut(s)	542, 652
BslFI	GGGAC	1 cut(s)	584
BsmAI	GTCTC	1 cut(s)	649
BsmFI	GGGAC	1 cut(s)	584
Bsp143I	GATC	3 cut(s)	268, 373, 615
BspCNI	CTCAG	1 cut(s)	599
BspDI	ATCGAT	1 cut(s)	614
BspHI	TCATGA	1 cut(s)	288
BspLI	GGNNCC	4 cut(s)	270, 649, 664, 679
BspMI	ACCTGC	2 cut(s)	467, 481
BspPI	GGATC	2 cut(s)	263, 276
BsrDI	GCAATG	1 cut(s)	439
BsrI	ACTGG	1 cut(s)	394
BssMI	GATC	3 cut(s)	268, 373, 615
BssSI	CACGAG	1 cut(s)	369
Bst2BI	CACGAG	1 cut(s)	369
Bst6I	CTCTTC	3 cut(s)	72, 224, 501
BstDEI	CTNAG	3 cut(s)	312, 574, 586
BstF5I	GGATG	4 cut(s)	268, 456, 478, 505
BstKTI	GATC	3 cut(s)	271, 376, 618
BstMAI	GTCTC	1 cut(s)	649
BstMBI	GATC	3 cut(s)	268, 373, 615
BstSCI	CCNGG	1 cut(s)	650
BstSFI	CTRYAG	1 cut(s)	213
BstV2I	GAAGAC	2 cut(s)	43, 676
BstX2I	RGATCY	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	268
Bsu15I	ATCGAT	1 cut(s)	614
BsuI	GTATCC	1 cut(s)	92
BsuTUI	ATCGAT	1 cut(s)	614
BtsCI	GGATG	4 cut(s)	268, 456, 478, 505
BtsIMutI	CAGTG	1 cut(s)	183
BveI	ACCTGC	2 cut(s)	467, 481
CciI	TCATGA	1 cut(s)	288
Cfr13I	GGNCC	1 cut(s)	19
ClaI	ATCGAT	1 cut(s)	614
Csp6I	GTAC	3 cut(s)	240, 547, 583
CviAII	CATG	4 cut(s)	34, 273, 289, 412
CviJI	RGCY	7 cut(s)	6, 84, 285, 366, 648, 663, 678
CviKI_1	RGCY	7 cut(s)	6, 84, 285, 366, 648, 663, 678
CviQI	GTAC	3 cut(s)	240, 547, 583
DdeI	CTNAG	3 cut(s)	312, 574, 586
DpnI	GATC	3 cut(s)	270, 375, 617
DpnII	GATC	3 cut(s)	268, 373, 615
Eam1104I	CTCTTC	3 cut(s)	72, 224, 501
EarI	CTCTTC	3 cut(s)	72, 224, 501
Eco47I	GGWCC	1 cut(s)	19
FaeI	CATG	4 cut(s)	37, 276, 292, 415
FaiI	YATR	8 cut(s)	35, 57, 195, 215, 274, 290, 413, 581
FalI	AAGNNNNNCTT	4 cut(s)	498, 530, 557, 589
FaqI	GGGAC	1 cut(s)	584
FatI	CATG	4 cut(s)	33, 272, 288, 411
FblI	GTMKAC	1 cut(s)	209
FokI	GGATG	4 cut(s)	275, 463, 485, 512
FspBI	CTAG	1 cut(s)	357
HapII	CCGG	2 cut(s)	542, 652
Hin1II	CATG	4 cut(s)	37, 276, 292, 415
HincII	GTYRAC	1 cut(s)	562
HindII	GTYRAC	1 cut(s)	562
HindIII	AAGCTT	1 cut(s)	82
HinfI	GANTC	2 cut(s)	130, 206
HpaII	CCGG	2 cut(s)	542, 652
HphI	GGTGA	2 cut(s)	235, 491
Hpy166II	GTNNAC	3 cut(s)	210, 547, 562
Hpy188I	TCNGA	1 cut(s)	589
Hpy188III	TCNNGA	4 cut(s)	289, 371, 406, 666
Hpy8I	GTNNAC	3 cut(s)	210, 547, 562
HpyAV	CCTTC	2 cut(s)	323, 448
HpyCH4V	TGCA	2 cut(s)	37, 476
HpyF3I	CTNAG	3 cut(s)	312, 574, 586
Hsp92II	CATG	4 cut(s)	37, 276, 292, 415
Kzo9I	GATC	3 cut(s)	268, 373, 615
LmnI	GCTCC	5 cut(s)	429, 487, 653, 668, 683
LpnPI	CCDG	8 cut(s)	167, 407, 419, 462, 476, 555, 618, 665
LweI	GCATC	2 cut(s)	463, 630
MaeI	CTAG	1 cut(s)	357
MaeIII	GTNAC	2 cut(s)	149, 278
MalI	GATC	3 cut(s)	270, 375, 617
MboI	GATC	3 cut(s)	268, 373, 615
MboII	GAAGA	8 cut(s)	43, 59, 79, 238, 241, 328, 518, 681
MflI	RGATCY	1 cut(s)	268
MluCI	AATT	1 cut(s)	628
MlyI	GAGTC	1 cut(s)	215
MmeI	TCCRAC	1 cut(s)	477
MnlI	CCTC	8 cut(s)	86, 89, 214, 259, 356, 419, 502, 542
MseI	TTAA	1 cut(s)	341
MspI	CCGG	2 cut(s)	542, 652
MspR9I	CCNGG	1 cut(s)	652
NciI	CCSGG	1 cut(s)	652
NdeII	GATC	3 cut(s)	268, 373, 615
NlaIII	CATG	4 cut(s)	37, 276, 292, 415
NlaIV	GGNNCC	4 cut(s)	270, 649, 664, 679
NmeAIII	GCCGAG	1 cut(s)	32
NmuCI	GTSAC	2 cut(s)	149, 278
PagI	TCATGA	1 cut(s)	288
PaqCI	CACCTGC	2 cut(s)	467, 481
PfeI	GAWTC	1 cut(s)	130
PfoI	TCCNGGA	1 cut(s)	650
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
PspN4I	GGNNCC	4 cut(s)	270, 649, 664, 679
PspPI	GGNCC	1 cut(s)	19
PsuI	RGATCY	1 cut(s)	268
RsaI	GTAC	3 cut(s)	241, 548, 584
RsaNI	GTAC	3 cut(s)	240, 547, 583
SaqAI	TTAA	1 cut(s)	341
Sau3AI	GATC	3 cut(s)	268, 373, 615
Sau96I	GGNCC	1 cut(s)	19
SchI	GAGTC	1 cut(s)	215
ScrFI	CCNGG	1 cut(s)	652
SfaNI	GCATC	2 cut(s)	463, 630
SfcI	CTRYAG	1 cut(s)	213
SinI	GGWCC	1 cut(s)	19
Sse9I	AATT	1 cut(s)	628
SspI	AATATT	1 cut(s)	161
SspMI	CTAG	1 cut(s)	357
StyD4I	CCNGG	1 cut(s)	650
TaqI	TCGA	1 cut(s)	614
TasI	AATT	1 cut(s)	628
TatI	WGTACW	2 cut(s)	239, 582
TfiI	GAWTC	1 cut(s)	130
Tru1I	TTAA	1 cut(s)	341
Tru9I	TTAA	1 cut(s)	341
TscAI	CASTG	1 cut(s)	190
TseFI	GTSAC	2 cut(s)	149, 278
Tsp45I	GTSAC	2 cut(s)	149, 278
TspDTI	ATGAA	3 cut(s)	277, 428, 467
TspGWI	ACGGA	1 cut(s)	586
TspRI	CASTG	1 cut(s)	190
VpaK11BI	GGWCC	1 cut(s)	19
XcmI	CCANNNNNNNNNTGG	1 cut(s)	413
XmiI	GTMKAC	1 cut(s)	209
XspI	CTAG	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.