Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8447827.1

Orthogroup ID

OG0006499

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1455

Gene Structure 1455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8447827.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 593 bp

atgtttgtctggaatgagtatttgactcgtggaatccgaaattgtctgaataatactctctggacagttgccttagtttatggattcttcaaacaggtcaatctttctgtatcaggtagagatttcaagttgactgtcattgccagacgttcccgtcactttgctggcaccagatatttgaaaagaggtgtaaatgagaaaggtagagttgctaacgatgttgagacagagcaggttgtgattgaagatgcttctgaaggatgcccagtgcaaataagttcagttgtgcagaatcgaggctcaattccccttttctggtcccaggaaacctcacgattaaatattaaacccgacataatattatcaaggagggatcaaaattatgaggccacaagacttcattttgaaaatctcgtcaagagatatggaaatccaattattattttgaatttgatcaagacatgtgagaagaagcctcgagaaacaattctccgtgcagagtttgcaaatgctatccgatttatcaataggagtttgtctaaggagagccgcctaaggtttcttcattgggatttgcataaacatgccagaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0005794 GO:0005811 GO:0006629 GO:0006644 GO:0006650 GO:0006661 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0010008 GO:0012505 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0031090 GO:0031410 GO:0031901 GO:0031902 GO:0031982 GO:0031984 GO:0034593 GO:0034595 GO:0036092 GO:0042578 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043813 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046474 GO:0046486 GO:0046488 GO:0052866 GO:0071704 GO:0090407 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0106018 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Syja_N

Protein Analysis

197

Amino Acids

23.06

Weight (kDa)

10.2

Isoelectric Point (pI)

39.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14205 AT3G14205
fragaria_vesca	FvH4_6g35480 FvH4_6g35480 FvH4_6g35480
malus_domestica	MD09G1175500.v1.1 MD17G1151300.v1.1
prunus_persica	Prupe.3G034500_v2.0.a1
pyrus_communis	pycom09g09320 pycom17g14460
rosa_chinensis	RchiOBHm_Chr2g0147031
rosa_laevigata	RLG00000020240
rosa_multiflora	Rmu_co8447827.1_g000001 Rmu_sc0001880.1_g000033 Rmu_sc0036715.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099750
rosa_rugosa	Rorug02G0398100 Rorug02G0398100 Rorug02G0398200
rosa_samantha	Rh2AG455200 Rh2BG467600 Rh2CG442600 Rh2DG476800 Rh2DG476900
rosa_wichuraiana	Rw2G037140 Rw2G037240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	153
Acc36I	ACCTGC	1 cut(s)	223
AccB1I	GGYRCC	1 cut(s)	167
AciI	CCGC	1 cut(s)	550
AclWI	GGATC	1 cut(s)	381
AcsI	RAATTY	1 cut(s)	448
AcuI	CTGAAG	1 cut(s)	276
AfiI	CCNNNNNNNGG	1 cut(s)	315
AflIII	ACRYGT	1 cut(s)	461
AgsI	TTSAA	6 cut(s)	91, 127, 181, 245, 407, 448
AjnI	CCWGG	1 cut(s)	321
Alw26I	GTCTC	1 cut(s)	218
AlwI	GGATC	1 cut(s)	381
Ama87I	CYCGRG	1 cut(s)	477
AoxI	GGCC	1 cut(s)	387
ApoI	RAATTY	1 cut(s)	448
Asp700I	GAANNNNTTC	1 cut(s)	486
AspS9I	GGNCC	1 cut(s)	318
AvaI	CYCGRG	1 cut(s)	477
AvaII	GGWCC	1 cut(s)	318
AxyI	CCTNAGG	1 cut(s)	554
BanI	GGYRCC	1 cut(s)	167
BauI	CACGAG	1 cut(s)	27
BciT130I	CCWGG	1 cut(s)	323
BclI	TGATCA	1 cut(s)	453
BcoDI	GTCTC	1 cut(s)	218
BfuAI	ACCTGC	1 cut(s)	223
BisI	GCNGC	1 cut(s)	550
BlsI	GCNGC	1 cut(s)	551
Bme1390I	CCNGG	1 cut(s)	323
Bme18I	GGWCC	1 cut(s)	318
BmeT110I	CYCGRG	1 cut(s)	477
BmgT120I	GGNCC	1 cut(s)	318
BmiI	GGNNCC	2 cut(s)	169, 320
BmrFI	CCNGG	1 cut(s)	323
BmrI	ACTGGG	1 cut(s)	260
BmsI	GCATC	2 cut(s)	238, 251
BmuI	ACTGGG	1 cut(s)	260
BsaJI	CCNNGG	1 cut(s)	321
Bsc4I	CCNNNNNNNGG	1 cut(s)	315
Bse1I	ACTGG	1 cut(s)	266
Bse21I	CCTNAGG	1 cut(s)	554
Bse3DI	GCAATG	1 cut(s)	138
BseBI	CCWGG	1 cut(s)	323
BseDI	CCNNGG	1 cut(s)	321
BseGI	GGATG	1 cut(s)	266
BseLI	CCNNNNNNNGG	1 cut(s)	315
BseMI	GCAATG	1 cut(s)	138
BseNI	ACTGG	1 cut(s)	266
BsgI	GTGCAG	2 cut(s)	308, 516
BshFI	GGCC	1 cut(s)	389
BshNI	GGYRCC	1 cut(s)	167
BsiHKCI	CYCGRG	1 cut(s)	477
BslFI	GGGAC	1 cut(s)	304
BslI	CCNNNNNNNGG	1 cut(s)	315
BsmAI	GTCTC	1 cut(s)	218
BsmFI	GGGAC	1 cut(s)	304
BsnI	GGCC	1 cut(s)	389
BsoBI	CYCGRG	1 cut(s)	477
Bsp143I	GATC	2 cut(s)	373, 453
BspACI	CCGC	1 cut(s)	550
BspANI	GGCC	1 cut(s)	389
BspLI	GGNNCC	2 cut(s)	169, 320
BspMI	ACCTGC	1 cut(s)	223
BspPI	GGATC	1 cut(s)	381
BspT107I	GGYRCC	1 cut(s)	167
BsrDI	GCAATG	1 cut(s)	138
BsrI	ACTGG	1 cut(s)	266
BssECI	CCNNGG	1 cut(s)	321
BssMI	GATC	2 cut(s)	373, 453
BssSI	CACGAG	1 cut(s)	27
Bst2BI	CACGAG	1 cut(s)	27
Bst2UI	CCWGG	1 cut(s)	323
Bst4CI	ACNGT	2 cut(s)	67, 136
BstAPI	GCANNNNNTGC	1 cut(s)	503
BstC8I	GCNNGC	1 cut(s)	166
BstDEI	CTNAG	3 cut(s)	73, 540, 554
BstF5I	GGATG	1 cut(s)	266
BstKTI	GATC	2 cut(s)	376, 456
BstMAI	GTCTC	1 cut(s)	218
BstMBI	GATC	2 cut(s)	373, 453
BstMWI	GCNNNNNNNGC	1 cut(s)	503
BstNI	CCWGG	1 cut(s)	323
BstNSI	RCATGY	2 cut(s)	465, 587
BstSCI	CCNGG	1 cut(s)	321
Bsu36I	CCTNAGG	1 cut(s)	554
BsuRI	GGCC	1 cut(s)	389
BtsCI	GGATG	1 cut(s)	266
BtsIMutI	CAGTG	1 cut(s)	273
BveI	ACCTGC	1 cut(s)	223
Cac8I	GCNNGC	1 cut(s)	166
Cfr13I	GGNCC	1 cut(s)	318
CviAII	CATG	2 cut(s)	462, 584
CviJI	RGCY	4 cut(s)	300, 389, 475, 549
CviKI_1	RGCY	4 cut(s)	300, 389, 475, 549
DdeI	CTNAG	3 cut(s)	73, 540, 554
DpnI	GATC	2 cut(s)	375, 455
DpnII	GATC	2 cut(s)	373, 453
DrdI	GACNNNNNNGTC	1 cut(s)	153
DseDI	GACNNNNNNGTC	1 cut(s)	153
Eco47I	GGWCC	1 cut(s)	318
Eco57I	CTGAAG	1 cut(s)	276
Eco81I	CCTNAGG	1 cut(s)	554
Eco88I	CYCGRG	1 cut(s)	477
EcoRII	CCWGG	1 cut(s)	321
FaeI	CATG	2 cut(s)	465, 587
FaiI	YATR	7 cut(s)	81, 356, 384, 426, 463, 579, 585
FaqI	GGGAC	1 cut(s)	304
FatI	CATG	2 cut(s)	461, 583
FbaI	TGATCA	1 cut(s)	453
Fnu4HI	GCNGC	1 cut(s)	550
FokI	GGATG	1 cut(s)	273
Fsp4HI	GCNGC	1 cut(s)	550
GluI	GCNGC	1 cut(s)	550
HaeIII	GGCC	1 cut(s)	389
Hin1II	CATG	2 cut(s)	465, 587
HincII	GTYRAC	1 cut(s)	132
HindII	GTYRAC	1 cut(s)	132
HinfI	GANTC	4 cut(s)	25, 33, 84, 292
Hpy166II	GTNNAC	1 cut(s)	132
Hpy188I	TCNGA	4 cut(s)	38, 48, 256, 518
Hpy188III	TCNNGA	6 cut(s)	10, 61, 333, 418, 457, 479
Hpy8I	GTNNAC	1 cut(s)	132
HpyAV	CCTTC	1 cut(s)	251
HpyCH4III	ACNGT	2 cut(s)	67, 136
HpyCH4IV	ACGT	1 cut(s)	148
HpyCH4V	TGCA	5 cut(s)	271, 289, 497, 506, 577
HpyF10VI	GCNNNNNNNGC	1 cut(s)	503
HpyF3I	CTNAG	3 cut(s)	73, 540, 554
HpySE526I	ACGT	1 cut(s)	148
Hsp92II	CATG	2 cut(s)	465, 587
Ksp22I	TGATCA	1 cut(s)	453
Kzo9I	GATC	2 cut(s)	373, 453
LweI	GCATC	2 cut(s)	238, 251
MaeII	ACGT	1 cut(s)	148
MaeIII	GTNAC	1 cut(s)	155
MalI	GATC	2 cut(s)	375, 455
MboI	GATC	2 cut(s)	373, 453
MboII	GAAGA	4 cut(s)	79, 257, 481, 554
MluCI	AATT	6 cut(s)	40, 303, 379, 435, 448, 486
MlyI	GAGTC	1 cut(s)	19
MnlI	CCTC	6 cut(s)	179, 290, 340, 363, 379, 486
MroXI	GAANNNNTTC	1 cut(s)	486
MseI	TTAA	2 cut(s)	338, 345
MslI	CAYNNNNRTG	1 cut(s)	582
MspR9I	CCNGG	1 cut(s)	323
MvaI	CCWGG	1 cut(s)	323
MwoI	GCNNNNNNNGC	1 cut(s)	503
NdeII	GATC	2 cut(s)	373, 453
NlaIII	CATG	2 cut(s)	465, 587
NlaIV	GGNNCC	2 cut(s)	169, 320
NmuCI	GTSAC	1 cut(s)	155
NspI	RCATGY	2 cut(s)	465, 587
PaeR7I	CTCGAG	1 cut(s)	477
PciI	ACATGT	1 cut(s)	461
PcsI	WCGNNNNNNNCGW	1 cut(s)	34
PdmI	GAANNNNTTC	1 cut(s)	486
PfeI	GAWTC	3 cut(s)	33, 84, 292
PkrI	GCNGC	1 cut(s)	551
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
PscI	ACATGT	1 cut(s)	461
Psp6I	CCWGG	1 cut(s)	321
PspGI	CCWGG	1 cut(s)	321
PspN4I	GGNNCC	2 cut(s)	169, 320
PspPI	GGNCC	1 cut(s)	318
RseI	CAYNNNNRTG	1 cut(s)	582
SaqAI	TTAA	2 cut(s)	338, 345
SatI	GCNGC	1 cut(s)	550
Sau3AI	GATC	2 cut(s)	373, 453
Sau96I	GGNCC	1 cut(s)	318
SchI	GAGTC	1 cut(s)	19
ScrFI	CCNGG	1 cut(s)	323
SetI	ASST	8 cut(s)	99, 118, 151, 190, 205, 237, 332, 560
SfaNI	GCATC	2 cut(s)	238, 251
Sfr274I	CTCGAG	1 cut(s)	477
SinI	GGWCC	1 cut(s)	318
SlaI	CTCGAG	1 cut(s)	477
SmiMI	CAYNNNNRTG	1 cut(s)	582
SmlI	CTYRAG	1 cut(s)	477
SmoI	CTYRAG	1 cut(s)	477
Sse9I	AATT	6 cut(s)	40, 303, 379, 435, 448, 486
SsiI	CCGC	1 cut(s)	550
SspI	AATATT	2 cut(s)	343, 360
StyD4I	CCNGG	1 cut(s)	321
TaaI	ACNGT	2 cut(s)	67, 136
TaiI	ACGT	1 cut(s)	151
TaqI	TCGA	2 cut(s)	295, 478
TasI	AATT	6 cut(s)	40, 303, 379, 435, 448, 486
TauI	GCSGC	1 cut(s)	552
TfiI	GAWTC	3 cut(s)	33, 84, 292
Tru1I	TTAA	2 cut(s)	338, 345
Tru9I	TTAA	2 cut(s)	338, 345
TscAI	CASTG	1 cut(s)	273
TseFI	GTSAC	1 cut(s)	155
Tsp45I	GTSAC	1 cut(s)	155
TspDTI	ATGAA	2 cut(s)	389, 554
TspGWI	ACGGA	1 cut(s)	482
TspRI	CASTG	1 cut(s)	273
VpaK11BI	GGWCC	1 cut(s)	318
XapI	RAATTY	1 cut(s)	448
XceI	RCATGY	2 cut(s)	465, 587
XhoI	CTCGAG	1 cut(s)	477
XmnI	GAANNNNTTC	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.