Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006499

Physical Location & Seq

Genomic Coordinates Forward (+)

21540814 .. 21548719

Gene Structure 7906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00099750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2478 bp

ATGACTTCAGAGAAAGAGCTACCGAATCGGGTCGACCAAGAACCAGAACCTGGCAGTCCTTGCTTTTTGCAGAAGTTCAAGCTCTACGAGACTCGCTCGAATTTTTATATGATAGGAAGAGACAAAAGCAGAACCCTTTGGAGGGTGTTAAAGATTGATAGATTGGATCCATCTGAGCTAAACATTCTTGAAGATTCCACAACATACACAGATATTGAGTGCTACGACCTTCTAAAACGGATACATGAAGGAAACAAGTCACTGGGTGGACTTAAGTTTATCACCAATTGTTATGGAATTGTTGGGTTCGTGAAGTTTCTGGGACCTTATTACATGCTTATTATTACAAAAAGAAGGAAGATTGGAGCAATTTGTGGTCATACTATCTACGCGATTAGCAAGAGCGAAATGATTCCAGTTCCAAATTCTTCTGTGCGGTCAAACTTGGCTAATTCTAGAAATGAGAACAGATACAAGAAGCTCTTATGCACAGTGGACCTGACAAAGGACTTCTTTTTCAGTTACTCATACAATGTAATGTGTAGTCTTCAAAAGAACTTATGCGACAGTAAGACAGGACCATTCCTTTATGAAACAATGTTCGTTTGGAATGAGTATTTGACTCGTGGAATCCGAAATTGTCTGAATAATACTCTCTGGACGGTTGCCTTAGTTTATGGATTCTTCAAACAGGTCAATCTTTCTGTATCAGGTAGAGATTTCAAGTTGACTGTCATTGCCAGACGTTCCCGTCACTTTGCTGGCACCAGATATTTGAAAAGAGGTGTAAATGAGAAAGGTAGAGTTGCTAATGATGTTGAGACAGAGCAGGTTGTGATTGAAGATGCTTCTGAAGGATGCCCAGTGCAAATAAGTTCAGTTGTGCAGAATCGAGGCTCAATTCCCCTTTTCTGGTCCCAGGAAACCTCACGATTAAATATCAAACCCGACATAATATTATCAAGGAGGGATCAAAATTATGAGGCCACAAGACTTCATTTTGAAAATCTCGTCAAGAGATATGGAAATCCAATTATTATTTTAAATTTGATCAAGACATGTGAGAAGAAGCCTCGAGAAACAATTCTCCGTGCAGAGTTTGCAAATGCTATCCGATTTATCAATAGGAGTTTGTCAAAGGAGAGCCACCTAAGGTTTCTTCATTGGGATTTGCATAAACATGCCAGAAGCAAAACAACCAATGTGTTGGCGCATCTAGGAAAAGTGGCTACATATGCATTGAGCTTAACCGGAATCTTCTATTGTCGAGCAACCCCAGATTTAAGGCCTGAGGGTTCATTCCACGGCTCCTGGTTTGAAAAAAGTGATGATGGTGGTGACTGCTTTTCACATAACTGTTCCAGTAAAGATGAGGATCTTGATAGCCTAGAAACAGAAATTAGCAATGGAAGCGGTGGTGATGATAGGAGCAGGAATCACAATGTCAAACCCCCAATGTTTCAGAAAGGGGTCCTGAGGACCAATTGCATAGACTGTTTAGATCGCACAAATGTAGCCCAATATGCTTATGGGCTAGTTGCTCTTGGACAGCAGTTGCATGCTTTAGGATTTATAGAATCCTCAGATATTGATCTAGACAACCCTCTGGCAGAAGATTTGATGAGAGTTTATGAGGCAATGGGTGACACTCTTGCATTGCAGTATGGTGGTTCTGCAGCTCACAACAAGATATTCTCTGAGAGAAGAGGTCAATGGAAGGCAGCAACTCAGTCCCAAGAGTTCTTTAGAACCCTTCAACGATTTTACAGTAATGCCTATGTGGATGCTGAGAAACAAGATGCTATTAATGTATTCCTAGGGCATTTTCAACCACTGCAGGGTAAACCAGCATTGTGGGAGTTGGACTCAGACCAGCATTATAATGTTGGGAGGCGCAATCCTAATTTTGCCGATGACAATGGCAGTTCATTTATGAAAAGATCACTATCAGATGGCAATATAATCCATGAAAGTGATTCACCTACGGAAAATACGGATGTTGGACACAATCAGCCTTTATCTGAAATTTCACAAGGAAGTAGCAAGGGTATTTCAGAGTCCGCCCCTACAATCTCAACTTGTGAAAGTGCAATATCTTATCGCAGGTTTACTCCCTCAATGCCATGCAAGCAGCTGTTTGATGGAATGCAAGAGGATCAATGCCTTAACAGTGGTCACATTTATTATGATGAGCATGATGATGATTGTAACTTCTCAAATTTTCTAGATGCGGACTGGTTGTCTACATCCGGAAATTCTTGTGAGGAAGAAATGTCTGGAAGGTCCATTGCCAGCCTTTCATCTGAGAATCTTGTGAATGCACCAAAATTTGAAACGAGCACATCTGCTAGTGAATCTGAATCCACAAAAAAGGGAAGAGGGCAGAGTGAATCTGATCTCGCATGTGATAATATGCCACCCGAGTATTCCAACAGCTTCATGAACTGGGTAGCGAACGGGGAGTTGCTGTTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0005794 GO:0005811 GO:0006629 GO:0006644 GO:0006650 GO:0006661 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0010008 GO:0012505 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0031090 GO:0031410 GO:0031901 GO:0031902 GO:0031982 GO:0031984 GO:0034593 GO:0034595 GO:0036092 GO:0042578 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043813 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046474 GO:0046486 GO:0046488 GO:0052866 GO:0071704 GO:0090407 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0106018 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Syja_N

Protein Analysis

825

Amino Acids

93.49

Weight (kDa)

6.11

Isoelectric Point (pI)

50.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syja_N	PF02383	98 - 395	2.5e-82	SacI homology domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14205 AT3G14205
fragaria_vesca	FvH4_6g35480 FvH4_6g35480 FvH4_6g35480
malus_domestica	MD09G1175500.v1.1 MD17G1151300.v1.1
prunus_persica	Prupe.3G034500_v2.0.a1
pyrus_communis	pycom09g09320 pycom17g14460
rosa_chinensis	RchiOBHm_Chr2g0147031
rosa_laevigata	RLG00000020240
rosa_multiflora	Rmu_co8447827.1_g000001 Rmu_sc0001880.1_g000033 Rmu_sc0036715.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099750
rosa_rugosa	Rorug02G0398100 Rorug02G0398100 Rorug02G0398200
rosa_samantha	Rh2AG455200 Rh2BG467600 Rh2CG442600 Rh2DG476800 Rh2DG476900
rosa_wichuraiana	Rw2G037140 Rw2G037240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1881
AasI	GACNNNNNNGTC	1 cut(s)	750
Acc36I	ACCTGC	2 cut(s)	820, 2094
AccB1I	GGYRCC	1 cut(s)	764
AccB7I	CCANNNNNTGG	1 cut(s)	50
AccI	GTMKAC	2 cut(s)	33, 2243
AccII	CGCG	1 cut(s)	392
AccIII	TCCGGA	1 cut(s)	2249
AciI	CCGC	4 cut(s)	436, 1413, 2061, 2231
AclWI	GGATC	5 cut(s)	161, 174, 978, 1383, 2163
AcsI	RAATTY	7 cut(s)	100, 424, 1045, 2025, 2218, 2254, 2327
AcuI	CTGAAG	1 cut(s)	873
AdeI	CACNNNGTG	1 cut(s)	266
AfiI	CCNNNNNNNGG	6 cut(s)	50, 141, 142, 505, 912, 1838
AflII	CTTAAG	1 cut(s)	272
AflIII	ACRYGT	1 cut(s)	1058
AhdI	GACNNNNNGTC	1 cut(s)	2239
AjnI	CCWGG	3 cut(s)	49, 918, 1310
AluBI	AGCT	8 cut(s)	19, 82, 178, 481, 1245, 1679, 2134, 2436
AluI	AGCT	8 cut(s)	19, 82, 178, 481, 1245, 1679, 2134, 2436
Alw21I	GWGCWC	1 cut(s)	2342
Alw26I	GTCTC	3 cut(s)	83, 114, 815
AlwI	GGATC	5 cut(s)	161, 174, 978, 1383, 2163
AlwNI	CAGNNNCTG	1 cut(s)	50
Ama87I	CYCGRG	2 cut(s)	1074, 2420
Aor13HI	TCCGGA	1 cut(s)	2249
AoxI	GGCC	2 cut(s)	984, 1286
ApeKI	GCWGC	3 cut(s)	1676, 1721, 2131
ApoI	RAATTY	7 cut(s)	100, 424, 1045, 2025, 2218, 2254, 2327
AseI	ATTAAT	1 cut(s)	1806
Asp700I	GAANNNNTTC	2 cut(s)	411, 1083
AspA2I	CCTAGG	1 cut(s)	1816
AspLEI	GCGC	2 cut(s)	1213, 1896
AspS9I	GGNCC	7 cut(s)	323, 496, 578, 915, 1471, 1479, 2283
AsuHPI	GGTGA	5 cut(s)	274, 1349, 1430, 1655, 1971
AvaI	CYCGRG	2 cut(s)	1074, 2420
AvaII	GGWCC	7 cut(s)	323, 496, 578, 915, 1471, 1479, 2283
AvrII	CCTAGG	1 cut(s)	1816
AxyI	CCTNAGG	3 cut(s)	1151, 1290, 1475
BamHI	GGATCC	1 cut(s)	166
BanI	GGYRCC	1 cut(s)	764
BauI	CACGAG	1 cut(s)	624
BbsI	GAAGAC	1 cut(s)	539
Bbv12I	GWGCWC	1 cut(s)	2342
BbvI	GCAGC	3 cut(s)	1688, 1733, 2143
BccI	CCATC	4 cut(s)	178, 1325, 1946, 2135
BceAI	ACGGC	1 cut(s)	1321
BciT130I	CCWGG	3 cut(s)	51, 920, 1312
BciVI	GTATCC	1 cut(s)	234
BclI	TGATCA	1 cut(s)	1050
BcoDI	GTCTC	3 cut(s)	83, 114, 815
BfaI	CTAG	8 cut(s)	456, 1217, 1388, 1535, 1595, 1817, 2225, 2349
BfmI	CTRYAG	2 cut(s)	1674, 1835
BfrI	CTTAAG	1 cut(s)	272
BfuAI	ACCTGC	2 cut(s)	820, 2094
BfuI	GTATCC	1 cut(s)	234
BisI	GCNGC	3 cut(s)	1677, 1722, 2132
BlnI	CCTAGG	1 cut(s)	1816
BlsI	GCNGC	3 cut(s)	1678, 1723, 2133
Bme1390I	CCNGG	3 cut(s)	51, 920, 1312
Bme18I	GGWCC	7 cut(s)	323, 496, 578, 915, 1471, 1479, 2283
BmeRI	GACNNNNNGTC	1 cut(s)	2239
BmeT110I	CYCGRG	2 cut(s)	1074, 2420
BmgT120I	GGNCC	7 cut(s)	323, 496, 578, 915, 1471, 1479, 2283
BmiI	GGNNCC	6 cut(s)	168, 324, 766, 917, 1309, 1472
BmrFI	CCNGG	3 cut(s)	51, 920, 1312
BmrI	ACTGGG	3 cut(s)	272, 857, 2455
BmsI	GCATC	6 cut(s)	835, 848, 1222, 1774, 1789, 2218
BmuI	ACTGGG	3 cut(s)	272, 857, 2455
BpiI	GAAGAC	1 cut(s)	539
BplI	GAGNNNNNCTC	4 cut(s)	80, 112, 1850, 1882
BsaBI	GATNNNNATC	3 cut(s)	1374, 1590, 1945
BsaJI	CCNNGG	3 cut(s)	918, 1303, 1816
BsaWI	WCCGGW	2 cut(s)	1250, 2249
BsaXI	ACNNNNNCTCC	1 cut(s)	2453
Bsc4I	CCNNNNNNNGG	6 cut(s)	50, 141, 142, 505, 912, 1838
Bse1I	ACTGG	6 cut(s)	267, 416, 863, 1362, 2240, 2450
Bse21I	CCTNAGG	3 cut(s)	1151, 1290, 1475
Bse3DI	GCAATG	5 cut(s)	735, 1411, 1644, 1655, 2286
Bse8I	GATNNNNATC	3 cut(s)	1374, 1590, 1945
BseAI	TCCGGA	1 cut(s)	2249
BseBI	CCWGG	3 cut(s)	51, 920, 1312
BseDI	CCNNGG	3 cut(s)	918, 1303, 1816
BseGI	GGATG	4 cut(s)	863, 1789, 2002, 2246
BseJI	GATNNNNATC	3 cut(s)	1374, 1590, 1945
BseLI	CCNNNNNNNGG	6 cut(s)	50, 141, 142, 505, 912, 1838
BseMI	GCAATG	5 cut(s)	735, 1411, 1644, 1655, 2286
BseMII	CTCAG	9 cut(s)	165, 1281, 1466, 1596, 1689, 1742, 1779, 1881, 2295
BseNI	ACTGG	6 cut(s)	267, 416, 863, 1362, 2240, 2450
BseXI	GCAGC	3 cut(s)	1688, 1733, 2143
BsgI	GTGCAG	2 cut(s)	905, 1113
Bsh1236I	CGCG	1 cut(s)	392
BshFI	GGCC	2 cut(s)	986, 1288
BshNI	GGYRCC	1 cut(s)	764
BsiHKAI	GWGCWC	1 cut(s)	2342
BsiHKCI	CYCGRG	2 cut(s)	1074, 2420
BsiSI	CCGG	2 cut(s)	1251, 2250
BslFI	GGGAC	3 cut(s)	336, 901, 1717
BslI	CCNNNNNNNGG	6 cut(s)	50, 141, 142, 505, 912, 1838
BsmAI	GTCTC	3 cut(s)	83, 114, 815
BsmFI	GGGAC	3 cut(s)	336, 901, 1717
BsmI	GAATGC	2 cut(s)	2151, 2323
BsnI	GGCC	2 cut(s)	986, 1288
BsoBI	CYCGRG	2 cut(s)	1074, 2420
Bsp1286I	GDGCHC	1 cut(s)	2342
Bsp13I	TCCGGA	1 cut(s)	2249
Bsp143I	GATC	9 cut(s)	166, 970, 1050, 1375, 1501, 1591, 1940, 2155, 2395
BspACI	CCGC	4 cut(s)	436, 1413, 2061, 2231
BspANI	GGCC	2 cut(s)	986, 1288
BspCNI	CTCAG	9 cut(s)	166, 1282, 1467, 1595, 1690, 1741, 1780, 1880, 2296
BspEI	TCCGGA	1 cut(s)	2249
BspFNI	CGCG	1 cut(s)	392
BspHI	TCATGA	1 cut(s)	2439
BspLI	GGNNCC	6 cut(s)	168, 324, 766, 917, 1309, 1472
BspMAI	CTGCAG	2 cut(s)	1678, 1839
BspMI	ACCTGC	2 cut(s)	820, 2094
BspPI	GGATC	5 cut(s)	161, 174, 978, 1383, 2163
BspT107I	GGYRCC	1 cut(s)	764
BspTI	CTTAAG	1 cut(s)	272
BsrDI	GCAATG	5 cut(s)	735, 1411, 1644, 1655, 2286
BsrI	ACTGG	6 cut(s)	267, 416, 863, 1362, 2240, 2450
BssECI	CCNNGG	3 cut(s)	918, 1303, 1816
BssMI	GATC	9 cut(s)	166, 970, 1050, 1375, 1501, 1591, 1940, 2155, 2395
BssSI	CACGAG	1 cut(s)	624
BssT1I	CCWWGG	1 cut(s)	1816
Bst2BI	CACGAG	1 cut(s)	624
Bst2UI	CCWGG	3 cut(s)	51, 920, 1312
Bst4CI	ACNGT	8 cut(s)	493, 569, 664, 733, 1358, 1496, 1769, 2171
Bst6I	CTCTTC	3 cut(s)	112, 1699, 2371
BstAFI	CTTAAG	1 cut(s)	272
BstAPI	GCANNNNNTGC	2 cut(s)	60, 1100
BstC8I	GCNNGC	4 cut(s)	763, 1560, 2129, 2293
BstDSI	CCRYGG	1 cut(s)	1303
BstENI	CCTNNNNNAGG	1 cut(s)	503
BstF5I	GGATG	4 cut(s)	863, 1789, 2002, 2246
BstFNI	CGCG	1 cut(s)	392
BstHHI	GCGC	2 cut(s)	1213, 1896
BstKTI	GATC	9 cut(s)	169, 973, 1053, 1378, 1504, 1594, 1943, 2158, 2398
BstMAI	GTCTC	3 cut(s)	83, 114, 815
BstMBI	GATC	9 cut(s)	166, 970, 1050, 1375, 1501, 1591, 1940, 2155, 2395
BstMWI	GCNNNNNNNGC	6 cut(s)	60, 1100, 1235, 1410, 1523, 2128
BstNI	CCWGG	3 cut(s)	51, 920, 1312
BstNSI	RCATGY	5 cut(s)	337, 1062, 1184, 1562, 2406
BstSCI	CCNGG	3 cut(s)	49, 918, 1310
BstSFI	CTRYAG	2 cut(s)	1674, 1835
BstUI	CGCG	1 cut(s)	392
BstV1I	GCAGC	3 cut(s)	1688, 1733, 2143
BstV2I	GAAGAC	1 cut(s)	539
BstX2I	RGATCY	2 cut(s)	166, 1375
BstXI	CCANNNNNNTGG	2 cut(s)	1207, 1854
BstYI	RGATCY	2 cut(s)	166, 1375
Bsu36I	CCTNAGG	3 cut(s)	1151, 1290, 1475
BsuI	GTATCC	1 cut(s)	234
BsuRI	GGCC	2 cut(s)	986, 1288
BtgI	CCRYGG	1 cut(s)	1303
BtsCI	GGATG	4 cut(s)	863, 1789, 2002, 2246
BtsI	GCAGTG	1 cut(s)	1832
BtsIMutI	CAGTG	5 cut(s)	260, 498, 870, 1832, 2176
BveI	ACCTGC	2 cut(s)	820, 2094
Cac8I	GCNNGC	4 cut(s)	763, 1560, 2129, 2293
CaiI	CAGNNNCTG	1 cut(s)	50
CciI	TCATGA	1 cut(s)	2439
CfoI	GCGC	2 cut(s)	1213, 1896
Cfr13I	GGNCC	7 cut(s)	323, 496, 578, 915, 1471, 1479, 2283
DpnI	GATC	9 cut(s)	168, 972, 1052, 1377, 1503, 1593, 1942, 2157, 2397
DpnII	GATC	9 cut(s)	166, 970, 1050, 1375, 1501, 1591, 1940, 2155, 2395
DraI	TTTAAA	1 cut(s)	1044
DraIII	CACNNNGTG	1 cut(s)	266
DrdI	GACNNNNNNGTC	1 cut(s)	750
DriI	GACNNNNNGTC	1 cut(s)	2239
DseDI	GACNNNNNNGTC	1 cut(s)	750
Eam1104I	CTCTTC	3 cut(s)	112, 1699, 2371
Eam1105I	GACNNNNNGTC	1 cut(s)	2239
EarI	CTCTTC	3 cut(s)	112, 1699, 2371
EciI	GGCGGA	1 cut(s)	2050
Eco130I	CCWWGG	1 cut(s)	1816
Eco147I	AGGCCT	1 cut(s)	1288
Eco47I	GGWCC	7 cut(s)	323, 496, 578, 915, 1471, 1479, 2283
Eco57I	CTGAAG	1 cut(s)	873
Eco81I	CCTNAGG	3 cut(s)	1151, 1290, 1475
Eco88I	CYCGRG	2 cut(s)	1074, 2420
EcoNI	CCTNNNNNAGG	1 cut(s)	503
EcoO109I	RGGNCCY	2 cut(s)	323, 1471
EcoRII	CCWGG	3 cut(s)	49, 918, 1310
EcoT14I	CCWWGG	1 cut(s)	1816
EcoT22I	ATGCAT	1 cut(s)	1240
ErhI	CCWWGG	1 cut(s)	1816
FalI	AAGNNNNNCTT	4 cut(s)	467, 499, 497, 529
FaqI	GGGAC	3 cut(s)	336, 901, 1717
FauNDI	CATATG	1 cut(s)	1234
FbaI	TGATCA	1 cut(s)	1050
FblI	GTMKAC	2 cut(s)	33, 2243
Fnu4HI	GCNGC	3 cut(s)	1677, 1722, 2132
FokI	GGATG	4 cut(s)	870, 1796, 2009, 2233
Fsp4HI	GCNGC	3 cut(s)	1677, 1722, 2132
FspBI	CTAG	8 cut(s)	456, 1217, 1388, 1535, 1595, 1817, 2225, 2349
GlaI	GCGC	2 cut(s)	1212, 1895
GluI	GCNGC	3 cut(s)	1677, 1722, 2132
HaeIII	GGCC	2 cut(s)	986, 1288
HapII	CCGG	2 cut(s)	1251, 2250
HhaI	GCGC	2 cut(s)	1213, 1896
Hin6I	GCGC	2 cut(s)	1211, 1894
HinP1I	GCGC	2 cut(s)	1211, 1894
HincII	GTYRAC	2 cut(s)	34, 729
HindII	GTYRAC	2 cut(s)	34, 729
HpaII	CCGG	2 cut(s)	1251, 2250
HphI	GGTGA	5 cut(s)	274, 1349, 1430, 1655, 1971
Hpy166II	GTNNAC	7 cut(s)	34, 269, 496, 729, 1844, 2109, 2244
Hpy8I	GTNNAC	7 cut(s)	34, 269, 496, 729, 1844, 2109, 2244
HpyAV	CCTTC	7 cut(s)	239, 242, 348, 848, 1711, 1763, 2274
HpyCH4III	ACNGT	8 cut(s)	493, 569, 664, 733, 1358, 1496, 1769, 2171
HpyCH4IV	ACGT	1 cut(s)	745
HpyF10VI	GCNNNNNNNGC	6 cut(s)	60, 1100, 1235, 1410, 1523, 2128
HpySE526I	ACGT	1 cut(s)	745
HspAI	GCGC	2 cut(s)	1211, 1894
Kpn2I	TCCGGA	1 cut(s)	2249
Ksp22I	TGATCA	1 cut(s)	1050
Kzo9I	GATC	9 cut(s)	166, 970, 1050, 1375, 1501, 1591, 1940, 2155, 2395
LmnI	GCTCC	3 cut(s)	365, 1313, 1428
Lsp1109I	GCAGC	3 cut(s)	1688, 1733, 2143
LweI	GCATC	6 cut(s)	835, 848, 1222, 1774, 1789, 2218
MaeI	CTAG	8 cut(s)	456, 1217, 1388, 1535, 1595, 1817, 2225, 2349
MaeII	ACGT	1 cut(s)	745
MaeIII	GTNAC	7 cut(s)	258, 521, 752, 1337, 1643, 2174, 2207
MalI	GATC	9 cut(s)	168, 972, 1052, 1377, 1503, 1593, 1942, 2157, 2397
MboI	GATC	9 cut(s)	166, 970, 1050, 1375, 1501, 1591, 1940, 2155, 2395
MfeI	CAATTG	2 cut(s)	286, 1483
MflI	RGATCY	2 cut(s)	166, 1375
MhlI	GDGCHC	1 cut(s)	2342
MlyI	GAGTC	4 cut(s)	85, 616, 1859, 2066
MmeI	TCCRAC	3 cut(s)	1842, 1981, 2454
Mph1103I	ATGCAT	1 cut(s)	1240
MroI	TCCGGA	1 cut(s)	2249
MroXI	GAANNNNTTC	2 cut(s)	411, 1083
MseI	TTAA	8 cut(s)	149, 273, 935, 1043, 1247, 1283, 1806, 2166
MslI	CAYNNNNRTG	4 cut(s)	1179, 1881, 1971, 2199
MspA1I	CMGCKG	1 cut(s)	2134
MspCI	CTTAAG	1 cut(s)	272
MspI	CCGG	2 cut(s)	1251, 2250
MspR9I	CCNGG	3 cut(s)	51, 920, 1312
MunI	CAATTG	2 cut(s)	286, 1483
Mva1269I	GAATGC	2 cut(s)	2151, 2323
MvaI	CCWGG	3 cut(s)	51, 920, 1312
MvnI	CGCG	1 cut(s)	392
MwoI	GCNNNNNNNGC	6 cut(s)	60, 1100, 1235, 1410, 1523, 2128
NdeI	CATATG	1 cut(s)	1234
NdeII	GATC	9 cut(s)	166, 970, 1050, 1375, 1501, 1591, 1940, 2155, 2395
NlaIV	GGNNCC	6 cut(s)	168, 324, 766, 917, 1309, 1472
NmuCI	GTSAC	5 cut(s)	258, 752, 1337, 1643, 2174
NsiI	ATGCAT	1 cut(s)	1240
NspI	RCATGY	5 cut(s)	337, 1062, 1184, 1562, 2406
PaeI	GCATGC	1 cut(s)	1562
PaeR7I	CTCGAG	1 cut(s)	1074
PagI	TCATGA	1 cut(s)	2439
PceI	AGGCCT	1 cut(s)	1288
PciI	ACATGT	1 cut(s)	1058
PcsI	WCGNNNNNNNCGW	1 cut(s)	631
PctI	GAATGC	2 cut(s)	2151, 2323
PdmI	GAANNNNTTC	2 cut(s)	411, 1083
PflMI	CCANNNNNTGG	1 cut(s)	50
PkrI	GCNGC	3 cut(s)	1678, 1723, 2133
PleI	GAGTC	4 cut(s)	85, 616, 1859, 2065
PpsI	GAGTC	4 cut(s)	85, 616, 1859, 2065
PpuMI	RGGWCCY	2 cut(s)	323, 1471
PscI	ACATGT	1 cut(s)	1058
PshBI	ATTAAT	1 cut(s)	1806
PsiI	TTATAA	1 cut(s)	1881
Psp5II	RGGWCCY	2 cut(s)	323, 1471
Psp6I	CCWGG	3 cut(s)	49, 918, 1310
PspGI	CCWGG	3 cut(s)	49, 918, 1310
PspN4I	GGNNCC	6 cut(s)	168, 324, 766, 917, 1309, 1472
PspPI	GGNCC	7 cut(s)	323, 496, 578, 915, 1471, 1479, 2283
PspPPI	RGGWCCY	2 cut(s)	323, 1471
PstI	CTGCAG	2 cut(s)	1678, 1839
PstNI	CAGNNNCTG	1 cut(s)	50
PsuI	RGATCY	2 cut(s)	166, 1375
PvuII	CAGCTG	1 cut(s)	2134
RseI	CAYNNNNRTG	4 cut(s)	1179, 1881, 1971, 2199
SalI	GTCGAC	1 cut(s)	32
SaqAI	TTAA	8 cut(s)	149, 273, 935, 1043, 1247, 1283, 1806, 2166
SatI	GCNGC	3 cut(s)	1677, 1722, 2132
Sau3AI	GATC	9 cut(s)	166, 970, 1050, 1375, 1501, 1591, 1940, 2155, 2395
Sau96I	GGNCC	7 cut(s)	323, 496, 578, 915, 1471, 1479, 2283
SchI	GAGTC	4 cut(s)	85, 616, 1859, 2066
ScrFI	CCNGG	3 cut(s)	51, 920, 1312
SduI	GDGCHC	1 cut(s)	2342
SfaNI	GCATC	6 cut(s)	835, 848, 1222, 1774, 1789, 2218
SfcI	CTRYAG	2 cut(s)	1674, 1835
Sfr274I	CTCGAG	1 cut(s)	1074
SinI	GGWCC	7 cut(s)	323, 496, 578, 915, 1471, 1479, 2283
SlaI	CTCGAG	1 cut(s)	1074
SmiMI	CAYNNNNRTG	4 cut(s)	1179, 1881, 1971, 2199
SmlI	CTYRAG	2 cut(s)	272, 1074
SmoI	CTYRAG	2 cut(s)	272, 1074
SphI	GCATGC	1 cut(s)	1562
SseBI	AGGCCT	1 cut(s)	1288
SsiI	CCGC	4 cut(s)	436, 1413, 2061, 2231
SspI	AATATT	1 cut(s)	957
SspMI	CTAG	8 cut(s)	456, 1217, 1388, 1535, 1595, 1817, 2225, 2349
StuI	AGGCCT	1 cut(s)	1288
StyD4I	CCNGG	3 cut(s)	49, 918, 1310
StyI	CCWWGG	1 cut(s)	1816
TaaI	ACNGT	8 cut(s)	493, 569, 664, 733, 1358, 1496, 1769, 2171
TaiI	ACGT	1 cut(s)	748
TaqI	TCGA	5 cut(s)	33, 98, 892, 1075, 1267
Tru1I	TTAA	8 cut(s)	149, 273, 935, 1043, 1247, 1283, 1806, 2166
Tru9I	TTAA	8 cut(s)	149, 273, 935, 1043, 1247, 1283, 1806, 2166
TscAI	CASTG	5 cut(s)	267, 498, 870, 1839, 2176
TseFI	GTSAC	5 cut(s)	258, 752, 1337, 1643, 2174
TseI	GCWGC	3 cut(s)	1676, 1721, 2131
Tsp45I	GTSAC	5 cut(s)	258, 752, 1337, 1643, 2174
TspGWI	ACGGA	4 cut(s)	253, 1079, 2000, 2009
TspRI	CASTG	5 cut(s)	267, 498, 870, 1839, 2176
Van91I	CCANNNNNTGG	1 cut(s)	50
Vha464I	CTTAAG	1 cut(s)	272
VpaK11BI	GGWCC	7 cut(s)	323, 496, 578, 915, 1471, 1479, 2283
VspI	ATTAAT	1 cut(s)	1806
XagI	CCTNNNNNAGG	1 cut(s)	503
XapI	RAATTY	7 cut(s)	100, 424, 1045, 2025, 2218, 2254, 2327
XbaI	TCTAGA	3 cut(s)	455, 1594, 2224
XceI	RCATGY	5 cut(s)	337, 1062, 1184, 1562, 2406
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1526
XhoI	CTCGAG	1 cut(s)	1074
XmaJI	CCTAGG	1 cut(s)	1816
XmiI	GTMKAC	2 cut(s)	33, 2243
XmnI	GAANNNNTTC	2 cut(s)	411, 1083
XspI	CTAG	8 cut(s)	456, 1217, 1388, 1535, 1595, 1817, 2225, 2349
Zsp2I	ATGCAT	1 cut(s)	1240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.