Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0006499

Physical Location & Seq

Genomic Coordinates Reverse (-)

61346135 .. 61348702

Gene Structure 2568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G037240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGTTTCAGAAAGGGGTCCTGAGGACCAATTGCATAGACTGTCTAGATCGCACAAATGTAGCCCAATATGCTTATGGGCTAGTTGCTCTTGGACAGCAGTTGCATGCTTTAGGATTTATAGAATCCTCAGATATTGATCTAGATAACCCTCTGGCAGAAGATTTGATGAGAGTTTATGAGGCAATGGGTGACACTCTTGCATTGCAGTATGGTGGTTCTGCAGCTCACAACAAGATATTCTCTGAGAGAAGAGGTCAATGGAAGGCAGCAACTCAGTCCCAAGAGTTCTTTAGAACCCTTCAACGATTTTACAGTAATGCCTACGTGGATGCTGAGAAACAAGATGCTATTAATGTATTCCTAGGGCATTTTCAACCGCTGCAGGGTAAACCAGCATTGTGGGAGTTGGACTCAGACCAGCATTATAATGTTGGGAGGCGCAATCCTAATTTTGCCGATGACAATGGCAGTTCATTTATGAAAAGATCACTATCAGATGGCAATATAATCCATGAAAGTGATTCACCTACGGAAAATACGGATGTTGGACACAATCAGCCTTTATCTGAAATTTCACAAGGAAGTAGCAAGGGTATTTCAGAGTCCGCCCCTACAATCTCAACTTGTGAAAGTGCAATATCTTATCGCAGGTTTACTCCCTCAATGCCATGCAAGCAGCTGTTTGATGGAATGCAAGAGGATCAATGCCTTAACAGTGATCACATTTATTATGATGAGCATGATGATGATTGTAACTTCTCAAATTTTCTAGATGCGGACTGGTTGTCTACATCCGGAAATTCTTGTGAAGAAGAAATGTCTGGAAGGTCCATTGCCAGCCTTTCATCTGAGAATCTTGTGAATGCACCAAAATTTGAAACGAGCACATCTACTAGTGAATCTGAATCGACAAAAAAGGGAAGAGGGCAGAGTGAATCTGATCTCGCATGTGATAATATGCCACCGAGTATTCCAACAGCTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0005794 GO:0005811 GO:0006629 GO:0006644 GO:0006650 GO:0006661 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0010008 GO:0012505 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0031090 GO:0031410 GO:0031901 GO:0031902 GO:0031982 GO:0031984 GO:0034593 GO:0034595 GO:0036092 GO:0042578 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043813 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046474 GO:0046486 GO:0046488 GO:0052866 GO:0071704 GO:0090407 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0106018 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Syja_N

Protein Analysis

328

Amino Acids

36.32

Weight (kDa)

4.55

Isoelectric Point (pI)

60.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14205 AT3G14205
fragaria_vesca	FvH4_6g35480 FvH4_6g35480 FvH4_6g35480
malus_domestica	MD09G1175500.v1.1 MD17G1151300.v1.1
prunus_persica	Prupe.3G034500_v2.0.a1
pyrus_communis	pycom09g09320 pycom17g14460
rosa_chinensis	RchiOBHm_Chr2g0147031
rosa_laevigata	RLG00000020240
rosa_multiflora	Rmu_co8447827.1_g000001 Rmu_sc0001880.1_g000033 Rmu_sc0036715.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099750
rosa_rugosa	Rorug02G0398100 Rorug02G0398100 Rorug02G0398200
rosa_samantha	Rh2AG455200 Rh2BG467600 Rh2CG442600 Rh2DG476800 Rh2DG476900
rosa_wichuraiana	Rw2G037140 Rw2G037240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	426
Acc36I	ACCTGC	1 cut(s)	639
AccI	GTMKAC	1 cut(s)	788
AccIII	TCCGGA	1 cut(s)	794
AciI	CCGC	3 cut(s)	377, 606, 776
AclWI	GGATC	1 cut(s)	708
AcsI	RAATTY	4 cut(s)	570, 763, 799, 872
AfiI	CCNNNNNNNGG	1 cut(s)	383
AgsI	TTSAA	3 cut(s)	302, 374, 878
AhdI	GACNNNNNGTC	1 cut(s)	784
AhlI	ACTAGT	1 cut(s)	893
AluBI	AGCT	3 cut(s)	224, 679, 980
AluI	AGCT	3 cut(s)	224, 679, 980
Alw21I	GWGCWC	1 cut(s)	887
AlwI	GGATC	1 cut(s)	708
Aor13HI	TCCGGA	1 cut(s)	794
ApeKI	GCWGC	4 cut(s)	221, 266, 379, 676
ApoI	RAATTY	4 cut(s)	570, 763, 799, 872
AseI	ATTAAT	1 cut(s)	351
AspA2I	CCTAGG	1 cut(s)	361
AspLEI	GCGC	1 cut(s)	441
AspS9I	GGNCC	3 cut(s)	16, 24, 828
AsuHPI	GGTGA	2 cut(s)	200, 516
AvaII	GGWCC	3 cut(s)	16, 24, 828
AvrII	CCTAGG	1 cut(s)	361
AxyI	CCTNAGG	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	887
BbvI	GCAGC	4 cut(s)	233, 278, 366, 688
BccI	CCATC	2 cut(s)	491, 680
BclI	TGATCA	1 cut(s)	718
BcuI	ACTAGT	1 cut(s)	893
BfaI	CTAG	6 cut(s)	44, 80, 140, 362, 770, 894
BfmI	CTRYAG	2 cut(s)	219, 380
BfuAI	ACCTGC	1 cut(s)	639
BisI	GCNGC	4 cut(s)	222, 267, 380, 677
BlnI	CCTAGG	1 cut(s)	361
BlsI	GCNGC	4 cut(s)	223, 268, 381, 678
Bme18I	GGWCC	3 cut(s)	16, 24, 828
BmeRI	GACNNNNNGTC	1 cut(s)	784
BmgT120I	GGNCC	3 cut(s)	16, 24, 828
BmiI	GGNNCC	1 cut(s)	17
BmsI	GCATC	3 cut(s)	319, 334, 763
BplI	GAGNNNNNCTC	2 cut(s)	395, 427
BsaAI	YACGTR	1 cut(s)	325
BsaBI	GATNNNNATC	2 cut(s)	135, 490
BsaJI	CCNNGG	1 cut(s)	361
BsaWI	WCCGGW	1 cut(s)	794
Bsc4I	CCNNNNNNNGG	1 cut(s)	383
Bse1I	ACTGG	1 cut(s)	785
Bse21I	CCTNAGG	1 cut(s)	20
Bse3DI	GCAATG	3 cut(s)	189, 200, 831
Bse8I	GATNNNNATC	2 cut(s)	135, 490
BseAI	TCCGGA	1 cut(s)	794
BseDI	CCNNGG	1 cut(s)	361
BseGI	GGATG	3 cut(s)	334, 547, 791
BseJI	GATNNNNATC	2 cut(s)	135, 490
BseLI	CCNNNNNNNGG	1 cut(s)	383
BseMI	GCAATG	3 cut(s)	189, 200, 831
BseMII	CTCAG	7 cut(s)	11, 141, 234, 287, 324, 426, 840
BseNI	ACTGG	1 cut(s)	785
BseXI	GCAGC	4 cut(s)	233, 278, 366, 688
BsiHKAI	GWGCWC	1 cut(s)	887
BsiSI	CCGG	1 cut(s)	795
BslFI	GGGAC	1 cut(s)	262
BslI	CCNNNNNNNGG	1 cut(s)	383
BsmFI	GGGAC	1 cut(s)	262
BsmI	GAATGC	2 cut(s)	696, 868
Bsp1286I	GDGCHC	1 cut(s)	887
Bsp13I	TCCGGA	1 cut(s)	794
Bsp143I	GATC	6 cut(s)	46, 136, 485, 700, 718, 940
BspACI	CCGC	3 cut(s)	377, 606, 776
BspCNI	CTCAG	7 cut(s)	12, 140, 235, 286, 325, 425, 841
BspEI	TCCGGA	1 cut(s)	794
BspHI	TCATGA	1 cut(s)	983
BspLI	GGNNCC	1 cut(s)	17
BspMAI	CTGCAG	2 cut(s)	223, 384
BspMI	ACCTGC	1 cut(s)	639
BspPI	GGATC	1 cut(s)	708
BsrDI	GCAATG	3 cut(s)	189, 200, 831
BsrI	ACTGG	1 cut(s)	785
BssECI	CCNNGG	1 cut(s)	361
BssMI	GATC	6 cut(s)	46, 136, 485, 700, 718, 940
BssT1I	CCWWGG	1 cut(s)	361
Bst4CI	ACNGT	3 cut(s)	41, 314, 716
Bst6I	CTCTTC	2 cut(s)	244, 916
BstBAI	YACGTR	1 cut(s)	325
BstC8I	GCNNGC	3 cut(s)	105, 674, 838
BstDEI	CTNAG	7 cut(s)	20, 127, 243, 273, 333, 412, 849
BstF5I	GGATG	3 cut(s)	334, 547, 791
BstHHI	GCGC	1 cut(s)	441
BstKTI	GATC	6 cut(s)	49, 139, 488, 703, 721, 943
BstMBI	GATC	6 cut(s)	46, 136, 485, 700, 718, 940
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 673
BstNSI	RCATGY	2 cut(s)	107, 951
BstSFI	CTRYAG	2 cut(s)	219, 380
BstV1I	GCAGC	4 cut(s)	233, 278, 366, 688
BstXI	CCANNNNNNTGG	1 cut(s)	399
Bsu36I	CCTNAGG	1 cut(s)	20
BtsCI	GGATG	3 cut(s)	334, 547, 791
BtsIMutI	CAGTG	1 cut(s)	721
BveI	ACCTGC	1 cut(s)	639
Cac8I	GCNNGC	3 cut(s)	105, 674, 838
CciI	TCATGA	1 cut(s)	983
CfoI	GCGC	1 cut(s)	441
Cfr13I	GGNCC	3 cut(s)	16, 24, 828
CviAII	CATG	6 cut(s)	104, 512, 669, 740, 948, 984
CviJI	RGCY	7 cut(s)	62, 79, 224, 559, 679, 840, 980
CviKI_1	RGCY	7 cut(s)	62, 79, 224, 559, 679, 840, 980
DdeI	CTNAG	7 cut(s)	20, 127, 243, 273, 333, 412, 849
DpnI	GATC	6 cut(s)	48, 138, 487, 702, 720, 942
DpnII	GATC	6 cut(s)	46, 136, 485, 700, 718, 940
DriI	GACNNNNNGTC	1 cut(s)	784
Eam1104I	CTCTTC	2 cut(s)	244, 916
Eam1105I	GACNNNNNGTC	1 cut(s)	784
EarI	CTCTTC	2 cut(s)	244, 916
EciI	GGCGGA	1 cut(s)	595
Eco130I	CCWWGG	1 cut(s)	361
Eco47I	GGWCC	3 cut(s)	16, 24, 828
Eco81I	CCTNAGG	1 cut(s)	20
EcoO109I	RGGNCCY	1 cut(s)	16
EcoT14I	CCWWGG	1 cut(s)	361
ErhI	CCWWGG	1 cut(s)	361
FaeI	CATG	6 cut(s)	107, 515, 672, 743, 951, 987
FaqI	GGGAC	1 cut(s)	262
FatI	CATG	6 cut(s)	103, 511, 668, 739, 947, 983
FbaI	TGATCA	1 cut(s)	718
FblI	GTMKAC	1 cut(s)	788
Fnu4HI	GCNGC	4 cut(s)	222, 267, 380, 677
FokI	GGATG	3 cut(s)	341, 554, 778
Fsp4HI	GCNGC	4 cut(s)	222, 267, 380, 677
FspBI	CTAG	6 cut(s)	44, 80, 140, 362, 770, 894
GlaI	GCGC	1 cut(s)	440
GluI	GCNGC	4 cut(s)	222, 267, 380, 677
HapII	CCGG	1 cut(s)	795
HhaI	GCGC	1 cut(s)	441
Hin1II	CATG	6 cut(s)	107, 515, 672, 743, 951, 987
Hin6I	GCGC	1 cut(s)	439
HinP1I	GCGC	1 cut(s)	439
HinfI	GANTC	8 cut(s)	122, 410, 521, 602, 853, 899, 905, 935
HpaII	CCGG	1 cut(s)	795
HphI	GGTGA	2 cut(s)	200, 516
Hpy166II	GTNNAC	3 cut(s)	389, 654, 789
Hpy188III	TCNNGA	7 cut(s)	19, 44, 140, 770, 795, 822, 984
Hpy8I	GTNNAC	3 cut(s)	389, 654, 789
HpyAV	CCTTC	3 cut(s)	256, 308, 819
HpyCH4III	ACNGT	3 cut(s)	41, 314, 716
HpyCH4IV	ACGT	1 cut(s)	324
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 673
HpyF3I	CTNAG	7 cut(s)	20, 127, 243, 273, 333, 412, 849
HpySE526I	ACGT	1 cut(s)	324
Hsp92II	CATG	6 cut(s)	107, 515, 672, 743, 951, 987
HspAI	GCGC	1 cut(s)	439
Kpn2I	TCCGGA	1 cut(s)	794
Ksp22I	TGATCA	1 cut(s)	718
Kzo9I	GATC	6 cut(s)	46, 136, 485, 700, 718, 940
Lsp1109I	GCAGC	4 cut(s)	233, 278, 366, 688
LweI	GCATC	3 cut(s)	319, 334, 763
MaeI	CTAG	6 cut(s)	44, 80, 140, 362, 770, 894
MaeII	ACGT	1 cut(s)	324
MaeIII	GTNAC	2 cut(s)	188, 752
MalI	GATC	6 cut(s)	48, 138, 487, 702, 720, 942
MboI	GATC	6 cut(s)	46, 136, 485, 700, 718, 940
MboII	GAAGA	5 cut(s)	170, 261, 821, 824, 933
MfeI	CAATTG	1 cut(s)	28
MhlI	GDGCHC	1 cut(s)	887
MluCI	AATT	6 cut(s)	28, 448, 570, 763, 799, 872
MlyI	GAGTC	2 cut(s)	404, 611
MmeI	TCCRAC	2 cut(s)	387, 526
MnlI	CCTC	9 cut(s)	15, 136, 159, 172, 245, 429, 670, 691, 917
MroI	TCCGGA	1 cut(s)	794
MseI	TTAA	2 cut(s)	351, 711
MslI	CAYNNNNRTG	3 cut(s)	426, 516, 744
MspA1I	CMGCKG	2 cut(s)	379, 679
MspI	CCGG	1 cut(s)	795
MunI	CAATTG	1 cut(s)	28
Mva1269I	GAATGC	2 cut(s)	696, 868
MwoI	GCNNNNNNNGC	2 cut(s)	68, 673
NdeII	GATC	6 cut(s)	46, 136, 485, 700, 718, 940
NlaIII	CATG	6 cut(s)	107, 515, 672, 743, 951, 987
NlaIV	GGNNCC	1 cut(s)	17
NmuCI	GTSAC	1 cut(s)	188
NspI	RCATGY	2 cut(s)	107, 951
PaeI	GCATGC	1 cut(s)	107
PagI	TCATGA	1 cut(s)	983
PctI	GAATGC	2 cut(s)	696, 868
PfeI	GAWTC	6 cut(s)	122, 521, 853, 899, 905, 935
PkrI	GCNGC	4 cut(s)	223, 268, 381, 678
PleI	GAGTC	2 cut(s)	404, 610
PpsI	GAGTC	2 cut(s)	404, 610
Ppu21I	YACGTR	1 cut(s)	325
PpuMI	RGGWCCY	1 cut(s)	16
PshBI	ATTAAT	1 cut(s)	351
PsiI	TTATAA	1 cut(s)	426
Psp5II	RGGWCCY	1 cut(s)	16
PspN4I	GGNNCC	1 cut(s)	17
PspPI	GGNCC	3 cut(s)	16, 24, 828
PspPPI	RGGWCCY	1 cut(s)	16
PstI	CTGCAG	2 cut(s)	223, 384
PvuII	CAGCTG	1 cut(s)	679
RseI	CAYNNNNRTG	3 cut(s)	426, 516, 744
SaqAI	TTAA	2 cut(s)	351, 711
SatI	GCNGC	4 cut(s)	222, 267, 380, 677
Sau3AI	GATC	6 cut(s)	46, 136, 485, 700, 718, 940
Sau96I	GGNCC	3 cut(s)	16, 24, 828
SchI	GAGTC	2 cut(s)	404, 611
SduI	GDGCHC	1 cut(s)	887
SetI	ASST	8 cut(s)	226, 256, 327, 529, 653, 681, 830, 982
SfaNI	GCATC	3 cut(s)	319, 334, 763
SfcI	CTRYAG	2 cut(s)	219, 380
SinI	GGWCC	3 cut(s)	16, 24, 828
SmiMI	CAYNNNNRTG	3 cut(s)	426, 516, 744
SpeI	ACTAGT	1 cut(s)	893
SphI	GCATGC	1 cut(s)	107
Sse9I	AATT	6 cut(s)	28, 448, 570, 763, 799, 872
SsiI	CCGC	3 cut(s)	377, 606, 776
SspMI	CTAG	6 cut(s)	44, 80, 140, 362, 770, 894
StyI	CCWWGG	1 cut(s)	361
TaaI	ACNGT	3 cut(s)	41, 314, 716
TaiI	ACGT	1 cut(s)	327
TaqI	TCGA	1 cut(s)	908
TasI	AATT	6 cut(s)	28, 448, 570, 763, 799, 872
TfiI	GAWTC	6 cut(s)	122, 521, 853, 899, 905, 935
Tru1I	TTAA	2 cut(s)	351, 711
Tru9I	TTAA	2 cut(s)	351, 711
TscAI	CASTG	1 cut(s)	721
TseFI	GTSAC	1 cut(s)	188
TseI	GCWGC	4 cut(s)	221, 266, 379, 676
Tsp45I	GTSAC	1 cut(s)	188
TspDTI	ATGAA	5 cut(s)	462, 494, 528, 834, 972
TspGWI	ACGGA	2 cut(s)	545, 554
TspRI	CASTG	1 cut(s)	721
VpaK11BI	GGWCC	3 cut(s)	16, 24, 828
VspI	ATTAAT	1 cut(s)	351
XapI	RAATTY	4 cut(s)	570, 763, 799, 872
XbaI	TCTAGA	3 cut(s)	43, 139, 769
XceI	RCATGY	2 cut(s)	107, 951
XcmI	CCANNNNNNNNNTGG	1 cut(s)	71
XmaJI	CCTAGG	1 cut(s)	361
XmiI	GTMKAC	1 cut(s)	788
XspI	CTAG	6 cut(s)	44, 80, 140, 362, 770, 894

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.