Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0006499

Physical Location & Seq

Genomic Coordinates Reverse (-)

68956511 .. 68956816

Gene Structure 306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG476800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGCTCTCTATATATGTAGTTCATTTATGAAAAGATCACTATCAGATGGCAATATAATCCATGAAAGTGATTCACCTACGGAAAATACGGATGTTGGACACAATCAGCCTTTATCTGAAATTTCACAAGGAAGTAGCAAGGGTATTTCAGAGTCTGCCCCTACAATCTCAACTTGTGAAAGTGCAATATCTTATCGCAGGTATGCCTACATTGCATTCACATACATGTTACCAAGAGAAGCTGTTTTAACAATTCTAGGTTTCACACTAAATGGTCAGTCTATCTCTCTATTGGTGTCGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0005794 GO:0005811 GO:0006629 GO:0006644 GO:0006650 GO:0006661 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0010008 GO:0012505 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0031090 GO:0031410 GO:0031901 GO:0031902 GO:0031982 GO:0031984 GO:0034593 GO:0034595 GO:0036092 GO:0042578 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043813 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046474 GO:0046486 GO:0046488 GO:0052866 GO:0071704 GO:0090407 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0106018 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Syja_N

Protein Analysis

101

Amino Acids

10.99

Weight (kDa)

4.95

Isoelectric Point (pI)

66.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G14205 AT3G14205
fragaria_vesca	FvH4_6g35480 FvH4_6g35480 FvH4_6g35480
malus_domestica	MD09G1175500.v1.1 MD17G1151300.v1.1
prunus_persica	Prupe.3G034500_v2.0.a1
pyrus_communis	pycom09g09320 pycom17g14460
rosa_chinensis	RchiOBHm_Chr2g0147031
rosa_laevigata	RLG00000020240
rosa_multiflora	Rmu_co8447827.1_g000001 Rmu_sc0001880.1_g000033 Rmu_sc0036715.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099750
rosa_rugosa	Rorug02G0398100 Rorug02G0398100 Rorug02G0398200
rosa_samantha	Rh2AG455200 Rh2BG467600 Rh2CG442600 Rh2DG476800 Rh2DG476900
rosa_wichuraiana	Rw2G037140 Rw2G037240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	189
AcsI	RAATTY	1 cut(s)	120
AflIII	ACRYGT	1 cut(s)	225
AluBI	AGCT	1 cut(s)	242
AluI	AGCT	1 cut(s)	242
AlwNI	CAGNNNCTG	1 cut(s)	155
ApoI	RAATTY	1 cut(s)	120
AsuHPI	GGTGA	1 cut(s)	66
BccI	CCATC	1 cut(s)	41
BfaI	CTAG	2 cut(s)	257, 304
BfuAI	ACCTGC	1 cut(s)	189
BsaBI	GATNNNNATC	1 cut(s)	40
Bse3DI	GCAATG	1 cut(s)	210
Bse8I	GATNNNNATC	1 cut(s)	40
BseGI	GGATG	1 cut(s)	97
BseJI	GATNNNNATC	1 cut(s)	40
BseMI	GCAATG	1 cut(s)	210
BsmI	GAATGC	1 cut(s)	215
Bsp143I	GATC	1 cut(s)	35
BspMI	ACCTGC	1 cut(s)	189
BsrDI	GCAATG	1 cut(s)	210
BssMI	GATC	1 cut(s)	35
BstF5I	GGATG	1 cut(s)	97
BstKTI	GATC	1 cut(s)	38
BstMBI	GATC	1 cut(s)	35
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstNSI	RCATGY	1 cut(s)	229
BtsCI	GGATG	1 cut(s)	97
BveI	ACCTGC	1 cut(s)	189
CaiI	CAGNNNCTG	1 cut(s)	155
CviAII	CATG	2 cut(s)	62, 226
CviJI	RGCY	3 cut(s)	5, 109, 242
CviKI_1	RGCY	3 cut(s)	5, 109, 242
DpnI	GATC	1 cut(s)	37
DpnII	GATC	1 cut(s)	35
FaeI	CATG	2 cut(s)	65, 229
FaiI	YATR	9 cut(s)	12, 14, 16, 29, 56, 63, 204, 223, 227
FatI	CATG	2 cut(s)	61, 225
FokI	GGATG	1 cut(s)	104
FspBI	CTAG	2 cut(s)	257, 304
Hin1II	CATG	2 cut(s)	65, 229
HinfI	GANTC	2 cut(s)	71, 152
HphI	GGTGA	1 cut(s)	66
Hpy188I	TCNGA	4 cut(s)	46, 118, 151, 301
HpyCH4V	TGCA	2 cut(s)	185, 215
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
Hsp92II	CATG	2 cut(s)	65, 229
Kzo9I	GATC	1 cut(s)	35
LpnPI	CCDG	1 cut(s)	184
MaeI	CTAG	2 cut(s)	257, 304
MaeIII	GTNAC	1 cut(s)	228
MalI	GATC	1 cut(s)	37
MboI	GATC	1 cut(s)	35
MluCI	AATT	2 cut(s)	120, 252
MlyI	GAGTC	1 cut(s)	161
MmeI	TCCRAC	2 cut(s)	76, 279
MseI	TTAA	1 cut(s)	248
MslI	CAYNNNNRTG	2 cut(s)	66, 224
Mva1269I	GAATGC	1 cut(s)	215
MwoI	GCNNNNNNNGC	1 cut(s)	212
NdeII	GATC	1 cut(s)	35
NlaIII	CATG	2 cut(s)	65, 229
NspI	RCATGY	1 cut(s)	229
PciI	ACATGT	1 cut(s)	225
PctI	GAATGC	1 cut(s)	215
PfeI	GAWTC	1 cut(s)	71
PleI	GAGTC	1 cut(s)	160
PpsI	GAGTC	1 cut(s)	160
PscI	ACATGT	1 cut(s)	225
PstNI	CAGNNNCTG	1 cut(s)	155
RseI	CAYNNNNRTG	2 cut(s)	66, 224
SaqAI	TTAA	1 cut(s)	248
Sau3AI	GATC	1 cut(s)	35
SchI	GAGTC	1 cut(s)	161
SetI	ASST	4 cut(s)	79, 203, 244, 262
SgeI	CNNG	8 cut(s)	74, 140, 151, 186, 211, 238, 246, 269
SmiMI	CAYNNNNRTG	2 cut(s)	66, 224
Sse9I	AATT	2 cut(s)	120, 252
SspMI	CTAG	2 cut(s)	257, 304
TasI	AATT	2 cut(s)	120, 252
TfiI	GAWTC	1 cut(s)	71
Tru1I	TTAA	1 cut(s)	248
Tru9I	TTAA	1 cut(s)	248
TspDTI	ATGAA	3 cut(s)	12, 44, 78
TspGWI	ACGGA	2 cut(s)	95, 104
XapI	RAATTY	1 cut(s)	120
XceI	RCATGY	1 cut(s)	229
XspI	CTAG	2 cut(s)	257, 304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.