MD09G1187400.v1.1

Forkhead associated domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0004815
Physical Location & Seq
Forward (+)
16346138 .. 16358170
12033 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1187400.v1.1.491

Sequence Viewer

Length: 1548 bp
ATGGTTTGGGGTTTCTTCCCTACCGACCCTCTCTCAGGTGAAGATAAATACTATATCTTTGCAAGGGGGACGTACAAAGTGGGTCGGAAAGGTTGTGATGTAAATATCACTAAAGATAAAGGAGTTTCTCGGGTTCATGCAGAAATAGTTGTTGATGCAATGATTGCCCCTCTTCCCCTGCAAACAAAATCTTCTATATTATCTTCCATAGTTCGAATTAGAGATTGCTCAAAATATGGAACATACATTAACAAGAACGTTACGTCAATGGAAAAGATTCATGAGTTACCCAATAGAGAAACAACGTTAAGGCAAGGAGACTTGGTTTCATTTGGAACTGGCAATGCAATCTACAGATTTTCCTTTGTTCCACTCATTTTCTTTGCGTGCTGCTCGGAACCAACCCAAGTGAATCACCCCCTTGAAGATAAACTTTCATCAATTGGTGCTCATGTCACTTATCATCTAAATCAGGAGTGCACACATGTACTTGTTGACCAACTCATGCCAGTGAAAGAAGATATAGTAGATGCTATTGTGGCGAAGAAACCTATTGTTCTTGGTAGTTGGGTTGAGTTTCTTGCAGAAAAAAACATTCGCAATGAGCTTCCTGGGTGTGAATCCTTTGCTCCAACACTAACAGTGGAAGGAGTATCAGTCAAACTTACAGATCCGAAAACTCGTGAAAACTGTTTAGAAGGATACACATTTTTGTTGGACTCCAAACCTGTGTATAAATTCATGGATCGCTTGTGGTCCTTACTGGAAGTGAGTGGTGCAAAGATTCTTTCCATTGATGGGTTTAATTTGAAGAGCCAAAGCTCACTTTGTGGAGAAAATGATCGTGTTGTATGTGTTATCCCAGAACGATTATCAGATGCTGGGTTAAATAAGCTTGGTTCACTTTTAAGAGTGAATGAGATTGGGTTAATATGTGCCATTTTAAATGGACGGTTGGATACATCTATGTTAAAGTCACCTTGCGTAGTTGTATCATCTTCATGCTCCACAGATGAAACTGTGGTAGCTGATTCTGATGCAGAAGAAATGGCCACTTCAGTTCTGGCAACTTCATCTGTTGGGACCAAAGGAGTTGTTGAAACTGTACCCCGTGAAATCTCCATGAGTTATGCAGCTATCAAATCTGAGGATAACTATGTCATGAGCTTTAGACGAAGTAGTGACATGGGAGGCAAGCTTGACGAGTCTGAAAGTGGAATTGCAGATATTATTTATAGCCAAGATTTGATTGTGCGAAATACAAGCCTACCTTGTGCCATTGTTACTACTGCAAACAACAGAGTTGTAAATTTCAAACGGTTCAGAAAGACAAATACTCGATCCGGGAATAGCTTCAGCAGACTTATTCCATTCTTGAAGTCCCCATATAAGGATTCTGAATATGGGAGTGAGGAAATGGTAGAGTCTGTGAAAGAAGAGAAAAGGAGAAAGCAAATGGAAGCCATTTCTGAAGAGTTATTCAGTAATGAAGCGGGTCGTCGTCGCCGTGTAGCTGGTTCTCTTCGTGGGATTCTTACTCATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000075 GO:0000077 GO:0000228 GO:0000278 GO:0000280 GO:0000723 GO:0000724 GO:0000725 GO:0000781 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007093 GO:0007095 GO:0007127 GO:0007131 GO:0007154 GO:0007165 GO:0007346 GO:0008134 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0010389 GO:0010564 GO:0010948 GO:0010972 GO:0016043 GO:0016233 GO:0016234 GO:0022402 GO:0022414 GO:0023052 GO:0030870 GO:0031570 GO:0031572 GO:0031974 GO:0031981 GO:0032200 GO:0032392 GO:0032508 GO:0032991 GO:0033554 GO:0034641 GO:0035556 GO:0035825 GO:0042127 GO:0042405 GO:0042592 GO:0042770 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044773 GO:0044774 GO:0044818 GO:0045786 GO:0045930 GO:0046483 GO:0047485 GO:0048145 GO:0048285 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0051321 GO:0051716 GO:0051726 GO:0060249 GO:0061982 GO:0065007 GO:0065008 GO:0070013 GO:0071103 GO:0071214 GO:0071478 GO:0071479 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:0104004 GO:0140013 GO:1901360 GO:1901363 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902749 GO:1902750 GO:1903046 GO:1903047
KEGG Pathways
Metabolic & Signaling
ko03440 ko04218 map03440 map04218
Pfam Domains
Protein Families
BRCT FHA

Protein Analysis

516

Amino Acids

57.01

Weight (kDa)

6.45

Isoelectric Point (pI)

42.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FHA PF00498 25 - 112 3.2e-09 FHA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 1493
AclI AACGTT 2 cut(s) 258, 305
AclWI GGATC 3 cut(s) 665, 753, 1335
AcoI YGGCCR 1 cut(s) 1050
AcsI RAATTY 2 cut(s) 737, 1309
AcuI CTGAAG 3 cut(s) 1041, 1339, 1491
AdeI CACNNNGTG 1 cut(s) 830
AfaI GTAC 3 cut(s) 74, 489, 1107
AfiI CCNNNNNNNGG 3 cut(s) 35, 798, 1390
AflIII ACRYGT 1 cut(s) 484
AgsI TTSAA 5 cut(s) 425, 811, 1100, 1315, 1378
AjnI CCWGG 1 cut(s) 610
AluBI AGCT 9 cut(s) 607, 822, 895, 1028, 1136, 1167, 1198, 1353, 1514
AluI AGCT 9 cut(s) 607, 822, 895, 1028, 1136, 1167, 1198, 1353, 1514
Alw21I GWGCWC 2 cut(s) 451, 482
Alw26I GTCTC 1 cut(s) 312
Alw44I GTGCAC 1 cut(s) 478
AlwI GGATC 3 cut(s) 665, 753, 1335
AlwNI CAGNNNCTG 1 cut(s) 881
Ama87I CYCGRG 1 cut(s) 129
AoxI GGCC 1 cut(s) 1050
ApaLI GTGCAC 1 cut(s) 478
ApeKI GCWGC 2 cut(s) 390, 1133
ApoI RAATTY 2 cut(s) 737, 1309
Asp700I GAANNNNTTC 2 cut(s) 276, 1352
AspS9I GGNCC 2 cut(s) 756, 1083
AsuC2I CCSGG 1 cut(s) 1345
AsuHPI GGTGA 3 cut(s) 50, 407, 969
AsuII TTCGAA 1 cut(s) 214
AvaI CYCGRG 1 cut(s) 129
AvaII GGWCC 2 cut(s) 756, 1083
BaeGI GKGCMC 1 cut(s) 482
BalI TGGCCA 1 cut(s) 1052
BauI CACGAG 1 cut(s) 681
Bbv12I GWGCWC 2 cut(s) 451, 482
BbvI GCAGC 2 cut(s) 377, 1145
BccI CCATC 1 cut(s) 791
BceAI ACGGC 1 cut(s) 1491
BciT130I CCWGG 1 cut(s) 612
BciVI GTATCC 2 cut(s) 695, 952
BcnI CCSGG 1 cut(s) 1345
BcoDI GTCTC 1 cut(s) 312
BfmI CTRYAG 1 cut(s) 352
BfuI GTATCC 2 cut(s) 695, 952
BisI GCNGC 2 cut(s) 391, 1134
BlsI GCNGC 2 cut(s) 392, 1135
Bme1390I CCNGG 2 cut(s) 612, 1345
Bme18I GGWCC 2 cut(s) 756, 1083
BmeT110I CYCGRG 1 cut(s) 129
BmgT120I GGNCC 2 cut(s) 756, 1083
BmiI GGNNCC 2 cut(s) 399, 1084
BmrFI CCNGG 2 cut(s) 612, 1345
BmsI GCATC 4 cut(s) 145, 520, 868, 1027
Bpu14I TTCGAA 1 cut(s) 214
BpuMI CCSGG 1 cut(s) 1345
BsaJI CCNNGG 1 cut(s) 611
BsaXI ACNNNNNCTCC 4 cut(s) 309, 339, 642, 672
Bsc4I CCNNNNNNNGG 3 cut(s) 35, 798, 1390
Bse1I ACTGG 3 cut(s) 343, 509, 768
Bse3DI GCAATG 3 cut(s) 165, 349, 607
BseBI CCWGG 1 cut(s) 612
BseDI CCNNGG 1 cut(s) 611
BseLI CCNNNNNNNGG 3 cut(s) 35, 798, 1390
BseMI GCAATG 3 cut(s) 165, 349, 607
BseMII CTCAG 2 cut(s) 48, 1137
BseNI ACTGG 3 cut(s) 343, 509, 768
BseSI GKGCMC 1 cut(s) 482
BseXI GCAGC 2 cut(s) 377, 1145
BseYI CCCAGC 1 cut(s) 881
BshFI GGCC 1 cut(s) 1052
BsiHKAI GWGCWC 2 cut(s) 451, 482
BsiHKCI CYCGRG 1 cut(s) 129
BsiSI CCGG 1 cut(s) 1344
BslFI GGGAC 3 cut(s) 82, 1096, 1366
BslI CCNNNNNNNGG 3 cut(s) 35, 798, 1390
BsmAI GTCTC 1 cut(s) 312
BsmFI GGGAC 3 cut(s) 82, 1096, 1366
BsnI GGCC 1 cut(s) 1052
BsoBI CYCGRG 1 cut(s) 129
Bsp119I TTCGAA 1 cut(s) 214
Bsp1286I GDGCHC 2 cut(s) 451, 482
Bsp143I GATC 4 cut(s) 670, 745, 841, 1340
BspACI CCGC 1 cut(s) 1493
BspANI GGCC 1 cut(s) 1052
BspCNI CTCAG 2 cut(s) 47, 1138
BspHI TCATGA 2 cut(s) 280, 1161
BspLI GGNNCC 2 cut(s) 399, 1084
BspPI GGATC 3 cut(s) 665, 753, 1335
BspQI GCTCTTC 1 cut(s) 806
BspT104I TTCGAA 1 cut(s) 214
BsrDI GCAATG 3 cut(s) 165, 349, 607
BsrI ACTGG 3 cut(s) 343, 509, 768
BssECI CCNNGG 1 cut(s) 611
BssMI GATC 4 cut(s) 670, 745, 841, 1340
BssSI CACGAG 1 cut(s) 681
Bst2BI CACGAG 1 cut(s) 681
Bst2UI CCWGG 1 cut(s) 612
Bst4CI ACNGT 6 cut(s) 643, 692, 954, 1021, 1105, 1320
Bst6I CTCTTC 5 cut(s) 177, 806, 1431, 1467, 1527
BstAPI GCANNNNNTGC 1 cut(s) 164
BstBI TTCGAA 1 cut(s) 214
BstC8I GCNNGC 2 cut(s) 388, 1196
BstDEI CTNAG 2 cut(s) 34, 1146
BstENI CCTNNNNNAGG 1 cut(s) 33
BstKTI GATC 4 cut(s) 673, 748, 844, 1343
BstMAI GTCTC 1 cut(s) 312
BstMBI GATC 4 cut(s) 670, 745, 841, 1340
BstMWI GCNNNNNNNGC 2 cut(s) 164, 539
BstNI CCWGG 1 cut(s) 612
BstNSI RCATGY 1 cut(s) 488
BstSCI CCNGG 2 cut(s) 610, 1343
BstSFI CTRYAG 1 cut(s) 352
BstSLI GKGCMC 1 cut(s) 482
BstV1I GCAGC 2 cut(s) 377, 1145
BstX2I RGATCY 1 cut(s) 670
BstYI RGATCY 1 cut(s) 670
BsuI GTATCC 2 cut(s) 695, 952
BsuRI GGCC 1 cut(s) 1052
BtsIMutI CAGTG 2 cut(s) 516, 648
Cac8I GCNNGC 2 cut(s) 388, 1196
CaiI CAGNNNCTG 1 cut(s) 881
CciI TCATGA 2 cut(s) 280, 1161
Cfr13I GGNCC 2 cut(s) 756, 1083
Csp6I GTAC 3 cut(s) 73, 488, 1106
CviQI GTAC 3 cut(s) 73, 488, 1106
DdeI CTNAG 2 cut(s) 34, 1146
DpnI GATC 4 cut(s) 672, 747, 843, 1342
DpnII GATC 4 cut(s) 670, 745, 841, 1340
DraI TTTAAA 1 cut(s) 945
DraIII CACNNNGTG 1 cut(s) 830
EaeI YGGCCR 1 cut(s) 1050
Eam1104I CTCTTC 5 cut(s) 177, 806, 1431, 1467, 1527
EarI CTCTTC 5 cut(s) 177, 806, 1431, 1467, 1527
Eco47I GGWCC 2 cut(s) 756, 1083
Eco57I CTGAAG 3 cut(s) 1041, 1339, 1491
Eco88I CYCGRG 1 cut(s) 129
EcoNI CCTNNNNNAGG 1 cut(s) 33
EcoRII CCWGG 1 cut(s) 610
FalI AAGNNNNNCTT 4 cut(s) 417, 449, 1255, 1287
FaqI GGGAC 3 cut(s) 82, 1096, 1366
FauI CCCGC 1 cut(s) 1486
Fnu4HI GCNGC 2 cut(s) 391, 1134
Fsp4HI GCNGC 2 cut(s) 391, 1134
GluI GCNGC 2 cut(s) 391, 1134
GsaI CCCAGC 1 cut(s) 885
HaeIII GGCC 1 cut(s) 1052
HapII CCGG 1 cut(s) 1344
HincII GTYRAC 1 cut(s) 496
HindII GTYRAC 1 cut(s) 496
HindIII AAGCTT 2 cut(s) 893, 1196
HpaII CCGG 1 cut(s) 1344
HphI GGTGA 3 cut(s) 50, 407, 969
Hpy166II GTNNAC 3 cut(s) 480, 496, 902
Hpy188III TCNNGA 5 cut(s) 281, 473, 683, 1162, 1375
Hpy8I GTNNAC 3 cut(s) 480, 496, 902
Hpy99I CGWCG 2 cut(s) 1503, 1506
HpyAV CCTTC 2 cut(s) 641, 692
HpyCH4III ACNGT 6 cut(s) 643, 692, 954, 1021, 1105, 1320
HpyCH4IV ACGT 4 cut(s) 71, 258, 263, 305
HpyF10VI GCNNNNNNNGC 2 cut(s) 164, 539
HpyF3I CTNAG 2 cut(s) 34, 1146
HpySE526I ACGT 4 cut(s) 71, 258, 263, 305
Kzo9I GATC 4 cut(s) 670, 745, 841, 1340
LguI GCTCTTC 1 cut(s) 806
LmnI GCTCC 2 cut(s) 634, 1010
Lsp1109I GCAGC 2 cut(s) 377, 1145
LweI GCATC 4 cut(s) 145, 520, 868, 1027
MaeII ACGT 4 cut(s) 71, 258, 263, 305
MaeIII GTNAC 6 cut(s) 259, 285, 454, 975, 1181, 1282
MalI GATC 4 cut(s) 672, 747, 843, 1342
MboI GATC 4 cut(s) 670, 745, 841, 1340
MfeI CAATTG 1 cut(s) 441
MflI RGATCY 1 cut(s) 670
MhlI GDGCHC 2 cut(s) 451, 482
MlsI TGGCCA 1 cut(s) 1052
MluCI AATT 6 cut(s) 216, 441, 737, 805, 1218, 1309
MluNI TGGCCA 1 cut(s) 1052
MlyI GAGTC 3 cut(s) 713, 1214, 1433
MmeI TCCRAC 4 cut(s) 65, 656, 696, 936
MnlI CCTC 5 cut(s) 39, 180, 1141, 1184, 1405
Mox20I TGGCCA 1 cut(s) 1052
MroXI GAANNNNTTC 2 cut(s) 276, 1352
MscI TGGCCA 1 cut(s) 1052
MseI TTAA 9 cut(s) 249, 308, 804, 887, 908, 929, 944, 971, 1546
MslI CAYNNNNRTG 2 cut(s) 509, 1000
Msp20I TGGCCA 1 cut(s) 1052
MspI CCGG 1 cut(s) 1344
MspR9I CCNGG 2 cut(s) 612, 1345
MunI CAATTG 1 cut(s) 441
MvaI CCWGG 1 cut(s) 612
MwoI GCNNNNNNNGC 2 cut(s) 164, 539
NciI CCSGG 1 cut(s) 1345
NdeII GATC 4 cut(s) 670, 745, 841, 1340
NlaIV GGNNCC 2 cut(s) 399, 1084
NmuCI GTSAC 3 cut(s) 454, 975, 1181
NspI RCATGY 1 cut(s) 488
NspV TTCGAA 1 cut(s) 214
PagI TCATGA 2 cut(s) 280, 1161
PciI ACATGT 1 cut(s) 484
PciSI GCTCTTC 1 cut(s) 806
PcsI WCGNNNNNNNCGW 1 cut(s) 1504
PdmI GAANNNNTTC 2 cut(s) 276, 1352
PfeI GAWTC 7 cut(s) 277, 412, 620, 784, 1031, 1394, 1531
PfoI TCCNGGA 1 cut(s) 1343
PkrI GCNGC 2 cut(s) 392, 1135
PleI GAGTC 3 cut(s) 713, 1213, 1432
PpsI GAGTC 3 cut(s) 713, 1213, 1432
PscI ACATGT 1 cut(s) 484
Psp1406I AACGTT 2 cut(s) 258, 305
Psp6I CCWGG 1 cut(s) 610
PspFI CCCAGC 1 cut(s) 881
PspGI CCWGG 1 cut(s) 610
PspN4I GGNNCC 2 cut(s) 399, 1084
PspPI GGNCC 2 cut(s) 756, 1083
PstNI CAGNNNCTG 1 cut(s) 881
PsuI RGATCY 1 cut(s) 670
RsaI GTAC 3 cut(s) 74, 489, 1107
RsaNI GTAC 3 cut(s) 73, 488, 1106
RseI CAYNNNNRTG 2 cut(s) 509, 1000
SapI GCTCTTC 1 cut(s) 806
SaqAI TTAA 9 cut(s) 249, 308, 804, 887, 908, 929, 944, 971, 1546
SatI GCNGC 2 cut(s) 391, 1134
Sau3AI GATC 4 cut(s) 670, 745, 841, 1340
Sau96I GGNCC 2 cut(s) 756, 1083
SchI GAGTC 3 cut(s) 713, 1214, 1433
ScrFI CCNGG 2 cut(s) 612, 1345
SduI GDGCHC 2 cut(s) 451, 482
SfaNI GCATC 4 cut(s) 145, 520, 868, 1027
SfcI CTRYAG 1 cut(s) 352
SfuI TTCGAA 1 cut(s) 214
SinI GGWCC 2 cut(s) 756, 1083
SmiMI CAYNNNNRTG 2 cut(s) 509, 1000
Sse9I AATT 6 cut(s) 216, 441, 737, 805, 1218, 1309
SsiI CCGC 1 cut(s) 1493
StyD4I CCNGG 2 cut(s) 610, 1343
TaaI ACNGT 6 cut(s) 643, 692, 954, 1021, 1105, 1320
TaiI ACGT 4 cut(s) 74, 261, 266, 308
TaqI TCGA 2 cut(s) 214, 1339
TasI AATT 6 cut(s) 216, 441, 737, 805, 1218, 1309
TatI WGTACW 1 cut(s) 487
TfiI GAWTC 7 cut(s) 277, 412, 620, 784, 1031, 1394, 1531
Tru1I TTAA 9 cut(s) 249, 308, 804, 887, 908, 929, 944, 971, 1546
Tru9I TTAA 9 cut(s) 249, 308, 804, 887, 908, 929, 944, 971, 1546
TscAI CASTG 2 cut(s) 516, 648
TseFI GTSAC 3 cut(s) 454, 975, 1181
TseI GCWGC 2 cut(s) 390, 1133
Tsp45I GTSAC 3 cut(s) 454, 975, 1181
TspDTI ATGAA 9 cut(s) 125, 269, 318, 426, 730, 990, 1029, 1062, 1503
TspRI CASTG 2 cut(s) 516, 648
VneI GTGCAC 1 cut(s) 478
VpaK11BI GGWCC 2 cut(s) 756, 1083
XagI CCTNNNNNAGG 1 cut(s) 33
XapI RAATTY 2 cut(s) 737, 1309
XceI RCATGY 1 cut(s) 488
XcmI CCANNNNNNNNNTGG 1 cut(s) 1060
XmnI GAANNNNTTC 2 cut(s) 276, 1352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.