Prupe.8G267600_v2.0.a1

Forkhead associated domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0004815
Physical Location & Seq
Forward (+)
22326110 .. 22332292
6183 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G267600.5

Sequence Viewer

Length: 1554 bp
ATGGTTTGGGGTTTCTTCCCCGACGACCCTCTCTCAGGTGAAGATAAGTTCTATATCTTCGCAAGGGGAACGTACAAAGTGGGTCGGAAAGGTTGTGATGTAAATATTACTAAAGATAAAGGAGTTTCTCGGGTCCATGCGGAAATAGTTGTTGATGCAATGATTTCTGCCCCCCTGCAAACAAAATCTTCTATTCTATCTTCAAAAGTTCGAATTAGAGATTGCTCAAAGTATGGAACATTTATTAACAAGAACCTTACTTCGATGGAAAAGATTCATGAGTTACCGAATAAAGAAACATCACTAAGAGAAGGGGACTTGGTTTCATTTGGTACTGGCAATGCAATCTACAGATTTTCCTTTGTTCCACTCATTTTCTTTGCGTGCTGCTCGGATCCAACCCAAGTGAATCATGCCCTTGAAGATAAACTTTCATCATTTGGTGCTCATATCACTTATCATCTGAGTCAAGAGTGCACACATGTGCTTGTTGACCAACTCATGCCAGTAAAAGAAGATATGCTGGATGCTATTGTGGCGAAGAAACCTTTTGTTCTTGGTAGTTGGGTTGAGTTCCTTGCAGAAAAAAACATTCGCACAGAGCTTCCTAGTTGTGAATCCTTTGCTCCAACACTAACATTTGAAGGAGTATCAGTCAAACTTGCAGACCCGAGAACTCGAGAGAACTGTTTGGAAGGGTACACCTTTTTGTTGGACTCAAAACCTGTGTATAAATTCATGAATCGCTTGCGGTCCTTACTGGAAGTGAGTGGTGCGAAGATTCTTACGATTGATGGGTTTAATTTGAATAGCCAAAGCTCAGATTGCAGAGAAAATGATCGTGTTGTATGTGTTATCCCGGAACAATCGTCAGATGATTGGTTCAATAAGCTTGGTTCACTATTAAGAGTGAATGAGACTGGCTTAATATCTGGCATTTTAAATGGACGGCTGGATCCAGCTATGTTAAAGTCACCTTGTGTAGTTGTATCATCTTCATGCTCCACCGATGAAACCGTGGTAGCTGATTCTGATACGGAAGAAATAGCCACTTCAGTTTTGGCAACTGCATCTCTTGGCACCAAAGGAGTCGTTGAAAATGTACCCCATGAAATCTCCACGAATTATGCAGCTCCTAAATCCGAGGATAACTATGTCATGAGCTGTCGACGCAGTAGTGACATATCCACCGTAAGAGGCAAGCTTGATGAATCTGAAAGTGGAAATGTAGATATTATTTATAGCCAAGATTTGATTGTGCGAGATGCAAGCATACCTTATACCGTTGCTACTACTGCAAACCACAGAGTTGTAAATTTCAAACGCTTCAGAAAGCCAAATATTCAATCTGGGAATAGCTTCAACAATATTATTCCATTCTTAAAGTACCCATATAAAGATTCTGACTATGGGGGTGAGGAAGTGCTAGAGTCTGTGAAAGAAGAGAAAAGGAGAAAGCAAATGGAAGCCGTTTCTGAAGAATTATTTAATAATGAAGGGAGGAGTCGTCGTGGCGTAGCTGGTTCTATTCGTGGAATTCTTAGTCATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000075 GO:0000077 GO:0000228 GO:0000278 GO:0000280 GO:0000723 GO:0000724 GO:0000725 GO:0000781 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007093 GO:0007095 GO:0007127 GO:0007131 GO:0007154 GO:0007165 GO:0007346 GO:0008134 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0010389 GO:0010564 GO:0010948 GO:0010972 GO:0016043 GO:0016233 GO:0016234 GO:0022402 GO:0022414 GO:0023052 GO:0030870 GO:0031570 GO:0031572 GO:0031974 GO:0031981 GO:0032200 GO:0032392 GO:0032508 GO:0032991 GO:0033554 GO:0034641 GO:0035556 GO:0035825 GO:0042127 GO:0042405 GO:0042592 GO:0042770 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044773 GO:0044774 GO:0044818 GO:0045786 GO:0045930 GO:0046483 GO:0047485 GO:0048145 GO:0048285 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0051321 GO:0051716 GO:0051726 GO:0060249 GO:0061982 GO:0065007 GO:0065008 GO:0070013 GO:0071103 GO:0071214 GO:0071478 GO:0071479 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:0104004 GO:0140013 GO:1901360 GO:1901363 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902749 GO:1902750 GO:1903046 GO:1903047
KEGG Pathways
Metabolic & Signaling
ko03440 ko04218 map03440 map04218
Pfam Domains
Protein Families
BRCT FHA

Protein Analysis

518

Amino Acids

57.4

Weight (kDa)

5.75

Isoelectric Point (pI)

47.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1079
AccI GTMKAC 1 cut(s) 1168
AciI CCGC 2 cut(s) 140, 751
AclWI GGATC 4 cut(s) 389, 402, 950, 963
AcsI RAATTY 3 cut(s) 734, 1315, 1536
AcuI CTGAAG 3 cut(s) 1038, 1312, 1497
AdeI CACNNNGTG 1 cut(s) 980
AfaI GTAC 5 cut(s) 74, 334, 701, 1104, 1388
AfiI CCNNNNNNNGG 1 cut(s) 35
AflIII ACRYGT 1 cut(s) 481
AgsI TTSAA 9 cut(s) 204, 422, 644, 808, 886, 1097, 1321, 1346, 1363
AleI CACNNNNGTG 1 cut(s) 482
Alw21I GWGCWC 2 cut(s) 448, 479
Alw26I GTCTC 1 cut(s) 911
Alw44I GTGCAC 1 cut(s) 475
AlwI GGATC 4 cut(s) 389, 402, 950, 963
Ama87I CYCGRG 3 cut(s) 129, 670, 678
ApaLI GTGCAC 1 cut(s) 475
ApeKI GCWGC 2 cut(s) 387, 1130
ApoI RAATTY 3 cut(s) 734, 1315, 1536
Asp700I GAANNNNTTC 2 cut(s) 273, 1358
AspS9I GGNCC 2 cut(s) 133, 753
AsuC2I CCSGG 1 cut(s) 860
AsuHPI GGTGA 3 cut(s) 50, 966, 1427
AsuII TTCGAA 1 cut(s) 211
AvaI CYCGRG 3 cut(s) 129, 670, 678
AvaII GGWCC 2 cut(s) 133, 753
BaeGI GKGCMC 1 cut(s) 479
BamHI GGATCC 2 cut(s) 394, 955
BanI GGYRCC 1 cut(s) 1079
Bbv12I GWGCWC 2 cut(s) 448, 479
BbvI GCAGC 2 cut(s) 374, 1142
BccI CCATC 2 cut(s) 259, 788
BceAI ACGGC 2 cut(s) 965, 1454
BcnI CCSGG 1 cut(s) 860
BcoDI GTCTC 1 cut(s) 911
BfaI CTAG 2 cut(s) 609, 1427
BfmI CTRYAG 1 cut(s) 349
BisI GCNGC 2 cut(s) 388, 1131
BlsI GCNGC 2 cut(s) 389, 1132
Bme1390I CCNGG 1 cut(s) 860
Bme18I GGWCC 2 cut(s) 133, 753
BmeT110I CYCGRG 3 cut(s) 129, 670, 678
BmgT120I GGNCC 2 cut(s) 133, 753
BmiI GGNNCC 4 cut(s) 134, 396, 957, 1081
BmrFI CCNGG 1 cut(s) 860
BmsI GCATC 4 cut(s) 145, 517, 1079, 1255
Bpu14I TTCGAA 1 cut(s) 211
BpuMI CCSGG 1 cut(s) 860
BsaJI CCNNGG 2 cut(s) 1017, 1143
BsaXI ACNNNNNCTCC 6 cut(s) 639, 669, 1492, 1495, 1522, 1525
Bsc4I CCNNNNNNNGG 1 cut(s) 35
Bse1I ACTGG 4 cut(s) 340, 506, 765, 925
Bse3DI GCAATG 2 cut(s) 165, 346
BseDI CCNNGG 2 cut(s) 1017, 1143
BseGI GGATG 1 cut(s) 532
BseLI CCNNNNNNNGG 1 cut(s) 35
BseMI GCAATG 2 cut(s) 165, 346
BseMII CTCAG 3 cut(s) 48, 455, 834
BseNI ACTGG 4 cut(s) 340, 506, 765, 925
BseRI GAGGAG 1 cut(s) 1516
BseSI GKGCMC 1 cut(s) 479
BseXI GCAGC 2 cut(s) 374, 1142
BshNI GGYRCC 1 cut(s) 1079
BsiHKAI GWGCWC 2 cut(s) 448, 479
BsiHKCI CYCGRG 3 cut(s) 129, 670, 678
BsiSI CCGG 1 cut(s) 860
BslFI GGGAC 1 cut(s) 329
BslI CCNNNNNNNGG 1 cut(s) 35
BsmAI GTCTC 1 cut(s) 911
BsmFI GGGAC 1 cut(s) 329
BsoBI CYCGRG 3 cut(s) 129, 670, 678
Bsp119I TTCGAA 1 cut(s) 211
Bsp1286I GDGCHC 2 cut(s) 448, 479
Bsp143I GATC 3 cut(s) 394, 838, 955
BspACI CCGC 2 cut(s) 140, 751
BspCNI CTCAG 3 cut(s) 47, 456, 833
BspHI TCATGA 3 cut(s) 277, 738, 1158
BspLI GGNNCC 4 cut(s) 134, 396, 957, 1081
BspPI GGATC 4 cut(s) 389, 402, 950, 963
BspT104I TTCGAA 1 cut(s) 211
BspT107I GGYRCC 1 cut(s) 1079
BsrDI GCAATG 2 cut(s) 165, 346
BsrI ACTGG 4 cut(s) 340, 506, 765, 925
BssECI CCNNGG 2 cut(s) 1017, 1143
BssMI GATC 3 cut(s) 394, 838, 955
Bst4CI ACNGT 4 cut(s) 689, 1018, 1192, 1285
Bst6I CTCTTC 1 cut(s) 1437
BstBI TTCGAA 1 cut(s) 211
BstC8I GCNNGC 4 cut(s) 385, 749, 1202, 1270
BstDEI CTNAG 5 cut(s) 34, 305, 464, 820, 1541
BstDSI CCRYGG 1 cut(s) 1017
BstENI CCTNNNNNAGG 1 cut(s) 33
BstF5I GGATG 1 cut(s) 532
BstKTI GATC 3 cut(s) 397, 841, 958
BstMAI GTCTC 1 cut(s) 911
BstMBI GATC 3 cut(s) 394, 838, 955
BstMWI GCNNNNNNNGC 4 cut(s) 536, 825, 1170, 1295
BstNSI RCATGY 1 cut(s) 485
BstSCI CCNGG 1 cut(s) 858
BstSFI CTRYAG 1 cut(s) 349
BstSLI GKGCMC 1 cut(s) 479
BstV1I GCAGC 2 cut(s) 374, 1142
BstX2I RGATCY 2 cut(s) 394, 955
BstYI RGATCY 2 cut(s) 394, 955
BtgI CCRYGG 1 cut(s) 1017
BtsCI GGATG 1 cut(s) 532
Cac8I GCNNGC 4 cut(s) 385, 749, 1202, 1270
CciI TCATGA 3 cut(s) 277, 738, 1158
Cfr13I GGNCC 2 cut(s) 133, 753
CseI GACGC 1 cut(s) 1179
Csp6I GTAC 5 cut(s) 73, 333, 700, 1103, 1387
CviQI GTAC 5 cut(s) 73, 333, 700, 1103, 1387
DdeI CTNAG 5 cut(s) 34, 305, 464, 820, 1541
DpnI GATC 3 cut(s) 396, 840, 957
DpnII GATC 3 cut(s) 394, 838, 955
DraI TTTAAA 1 cut(s) 942
DraIII CACNNNGTG 1 cut(s) 980
Eam1104I CTCTTC 1 cut(s) 1437
EarI CTCTTC 1 cut(s) 1437
Eco47I GGWCC 2 cut(s) 133, 753
Eco57I CTGAAG 3 cut(s) 1038, 1312, 1497
Eco88I CYCGRG 3 cut(s) 129, 670, 678
EcoNI CCTNNNNNAGG 1 cut(s) 33
EcoRI GAATTC 1 cut(s) 1536
FalI AAGNNNNNCTT 4 cut(s) 414, 446, 1261, 1293
FaqI GGGAC 1 cut(s) 329
FblI GTMKAC 1 cut(s) 1168
Fnu4HI GCNGC 2 cut(s) 388, 1131
FokI GGATG 1 cut(s) 539
Fsp4HI GCNGC 2 cut(s) 388, 1131
FspBI CTAG 2 cut(s) 609, 1427
GluI GCNGC 2 cut(s) 388, 1131
HapII CCGG 1 cut(s) 860
HgaI GACGC 1 cut(s) 1179
HincII GTYRAC 2 cut(s) 493, 1169
HindII GTYRAC 2 cut(s) 493, 1169
HindIII AAGCTT 2 cut(s) 890, 1202
HpaII CCGG 1 cut(s) 860
HphI GGTGA 3 cut(s) 50, 966, 1427
Hpy166II GTNNAC 5 cut(s) 477, 493, 702, 899, 1169
Hpy188III TCNNGA 5 cut(s) 278, 470, 680, 739, 1159
Hpy8I GTNNAC 5 cut(s) 477, 493, 702, 899, 1169
Hpy99I CGWCG 3 cut(s) 26, 1173, 1512
HpyAV CCTTC 4 cut(s) 305, 638, 689, 1490
HpyCH4III ACNGT 4 cut(s) 689, 1018, 1192, 1285
HpyCH4IV ACGT 1 cut(s) 71
HpyF10VI GCNNNNNNNGC 4 cut(s) 536, 825, 1170, 1295
HpyF3I CTNAG 5 cut(s) 34, 305, 464, 820, 1541
HpySE526I ACGT 1 cut(s) 71
Kzo9I GATC 3 cut(s) 394, 838, 955
LmnI GCTCC 3 cut(s) 631, 1007, 1138
Lsp1109I GCAGC 2 cut(s) 374, 1142
LweI GCATC 4 cut(s) 145, 517, 1079, 1255
MaeI CTAG 2 cut(s) 609, 1427
MaeII ACGT 1 cut(s) 71
MaeIII GTNAC 3 cut(s) 282, 972, 1178
MalI GATC 3 cut(s) 396, 840, 957
MboI GATC 3 cut(s) 394, 838, 955
MflI RGATCY 2 cut(s) 394, 955
MhlI GDGCHC 2 cut(s) 448, 479
MluCI AATT 7 cut(s) 213, 734, 802, 1123, 1315, 1481, 1536
MlyI GAGTC 5 cut(s) 475, 710, 1098, 1439, 1513
MmeI TCCRAC 4 cut(s) 65, 422, 653, 693
MnlI CCTC 5 cut(s) 39, 1138, 1190, 1411, 1494
MroXI GAANNNNTTC 2 cut(s) 273, 1358
MseI TTAA 9 cut(s) 246, 801, 905, 926, 941, 968, 1382, 1488, 1552
MslI CAYNNNNRTG 2 cut(s) 482, 997
MspI CCGG 1 cut(s) 860
MspR9I CCNGG 1 cut(s) 860
MwoI GCNNNNNNNGC 4 cut(s) 536, 825, 1170, 1295
NciI CCSGG 1 cut(s) 860
NdeII GATC 3 cut(s) 394, 838, 955
NlaIV GGNNCC 4 cut(s) 134, 396, 957, 1081
NmuCI GTSAC 2 cut(s) 972, 1178
NspI RCATGY 1 cut(s) 485
NspV TTCGAA 1 cut(s) 211
OliI CACNNNNGTG 1 cut(s) 482
PaeR7I CTCGAG 1 cut(s) 678
PagI TCATGA 3 cut(s) 277, 738, 1158
PciI ACATGT 1 cut(s) 481
PdmI GAANNNNTTC 2 cut(s) 273, 1358
PfeI GAWTC 8 cut(s) 274, 409, 617, 742, 781, 1028, 1211, 1400
PfoI TCCNGGA 1 cut(s) 858
PkrI GCNGC 2 cut(s) 389, 1132
PleI GAGTC 5 cut(s) 474, 710, 1097, 1438, 1512
PpsI GAGTC 5 cut(s) 474, 710, 1097, 1438, 1512
PscI ACATGT 1 cut(s) 481
PspN4I GGNNCC 4 cut(s) 134, 396, 957, 1081
PspPI GGNCC 2 cut(s) 133, 753
PsuI RGATCY 2 cut(s) 394, 955
RsaI GTAC 5 cut(s) 74, 334, 701, 1104, 1388
RsaNI GTAC 5 cut(s) 73, 333, 700, 1103, 1387
RseI CAYNNNNRTG 2 cut(s) 482, 997
SalI GTCGAC 1 cut(s) 1167
SaqAI TTAA 9 cut(s) 246, 801, 905, 926, 941, 968, 1382, 1488, 1552
SatI GCNGC 2 cut(s) 388, 1131
Sau3AI GATC 3 cut(s) 394, 838, 955
Sau96I GGNCC 2 cut(s) 133, 753
SchI GAGTC 5 cut(s) 475, 710, 1098, 1439, 1513
ScrFI CCNGG 1 cut(s) 860
SduI GDGCHC 2 cut(s) 448, 479
SfaNI GCATC 4 cut(s) 145, 517, 1079, 1255
SfcI CTRYAG 1 cut(s) 349
Sfr274I CTCGAG 1 cut(s) 678
SfuI TTCGAA 1 cut(s) 211
SinI GGWCC 2 cut(s) 133, 753
SlaI CTCGAG 1 cut(s) 678
SmiMI CAYNNNNRTG 2 cut(s) 482, 997
SmlI CTYRAG 1 cut(s) 678
SmoI CTYRAG 1 cut(s) 678
Sse9I AATT 7 cut(s) 213, 734, 802, 1123, 1315, 1481, 1536
SsiI CCGC 2 cut(s) 140, 751
SspI AATATT 3 cut(s) 106, 1342, 1369
SspMI CTAG 2 cut(s) 609, 1427
StyD4I CCNGG 1 cut(s) 858
TaaI ACNGT 4 cut(s) 689, 1018, 1192, 1285
TaiI ACGT 1 cut(s) 74
TaqI TCGA 4 cut(s) 211, 263, 679, 1168
TasI AATT 7 cut(s) 213, 734, 802, 1123, 1315, 1481, 1536
TfiI GAWTC 8 cut(s) 274, 409, 617, 742, 781, 1028, 1211, 1400
Tru1I TTAA 9 cut(s) 246, 801, 905, 926, 941, 968, 1382, 1488, 1552
Tru9I TTAA 9 cut(s) 246, 801, 905, 926, 941, 968, 1382, 1488, 1552
TseFI GTSAC 2 cut(s) 972, 1178
TseI GCWGC 2 cut(s) 387, 1130
Tsp45I GTSAC 2 cut(s) 972, 1178
TspGWI ACGGA 1 cut(s) 1052
VneI GTGCAC 1 cut(s) 475
VpaK11BI GGWCC 2 cut(s) 133, 753
XagI CCTNNNNNAGG 1 cut(s) 33
XapI RAATTY 3 cut(s) 734, 1315, 1536
XceI RCATGY 1 cut(s) 485
XcmI CCANNNNNNNNNTGG 1 cut(s) 1057
XhoI CTCGAG 1 cut(s) 678
XmiI GTMKAC 1 cut(s) 1168
XmnI GAANNNNTTC 2 cut(s) 273, 1358
XspI CTAG 2 cut(s) 609, 1427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.