Rorug07G0350000

Forkhead associated domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0004815
Physical Location & Seq
Reverse (-)
38778396 .. 38779955
1560 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0350000.1

Sequence Viewer

Length: 1509 bp
ATGTTACTCTGTACCTTTTTAGATTCAAAGCGGTGTGTCCTCTTTTGTTTTCTTCTTCGGCTCAACTTTGATAGACATTGCAAATACAAATTTCAAACAGATCAATTTCAGCGTACGATTAATAGATTAATAAATACCCATATAGATGGTGCTTCTCTCTTGCGACAGGGTGCTATATGGAGAATTGGGAATGGCGAATCTGTTCATTTCTGGACTGATAAATGGTTAGATATTGGTCCCATTTGTCATCAGGCTCTTGATCCTACTATGGTTGATGATCACTTGTTGGTACAAGATTTTTGGATGGATAATTGTTGGGACACTATTCTTCTCTATGCTTGTCTGCCTGCTGAGATTGTGGAAAAAATCTTATGTATCCCTATTTCCAATCCAGCTTCTGTGAGGGATAAAGTCATCTGGCAGCATATCTCAAATGGAAAATTTTCAGTCAAAAGTGCCTATAACTGCCTTGTTACCATTCAGCAAACACCTTCTAGAAAATGGAGGCATATTTGGAATCTTTCTATCCCTCCGAAACTAAAGATCTTCACTTGGCTATTTATTCAAAGTAGATTGCTTACTAATGAGAATAGATCCAGAAGGCACATGACAGATAACCCCAATTGTAGTCATTGTATTGATCTGTATGAATCTATGCTTCATCTTTTCAGGGATTGCATAAAGGCCAAGGAAGTTTGGAAAGATGTTGGTGTTCCTGTTACTATGCAAAGAACTTTCAACCTTGATTGGGAAGGGTGGATCACTGCTAATCTTTACCAGAATAACTGTAAGCATTTTGGCTTTAATTGGTCTCAATTGTTTGTGTTTATATGCTGGTTCATTTGGAAATGGAGGAACAAGTTTATTTTTGATAATGATTTTAAAGGTCCTCATAATGCCTCCACCACTATTCTTCAATACTTGCTGGAATTGAACAATGCTAATATAAAGCAATCTGGAGATTCTACTACTAGGGTGGAAATGATCGGTTGGAAGAAACCTAACAGAGGCCACTTTAAACTTAATGTGGATGGTTCTAAGAATGATAAGGGCCAGATAGGTGTTGGTGGAGTTATTAGAAATAATGAAGGTGTTTGGTGCAAGGGTTTTATGCAGCATATTGGTTATGGTGAAGTCTTGCAAGCTGAAGCTTGGGGCCTTGTGACTGGACTTCAAATTGCGGTTGATATGCAGATTAAGCATTTGGATGTGGAATCTGATTATGCTATTCTCATAAATCTAATTCAGAGTAAGGATATTGATTTACACCCTTTAGGGACTCTGATTTTGAACTGCAGATCATTGATGAATCACTTTGAGTCCTGCTCCATTAAGCATATTCATAGAGAAAGAAATATGGTGGCAGACATCTTAGCGAAGCATAGCTTGGACAACGAACTAGGAGTTTGCAGAATGGACACAAACCCTCCGTTTGTGAATCAAGTTTTGATGGATGATATTGATGGCCTGGTGAGGCCTAGGATGGTTGTAACAGCTTCGGTTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000075 GO:0000077 GO:0000228 GO:0000278 GO:0000280 GO:0000723 GO:0000724 GO:0000725 GO:0000781 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007093 GO:0007095 GO:0007127 GO:0007131 GO:0007154 GO:0007165 GO:0007346 GO:0008134 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0010389 GO:0010564 GO:0010948 GO:0010972 GO:0016043 GO:0016233 GO:0016234 GO:0022402 GO:0022414 GO:0023052 GO:0030870 GO:0031570 GO:0031572 GO:0031974 GO:0031981 GO:0032200 GO:0032392 GO:0032508 GO:0032991 GO:0033554 GO:0034641 GO:0035556 GO:0035825 GO:0042127 GO:0042405 GO:0042592 GO:0042770 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044773 GO:0044774 GO:0044818 GO:0045786 GO:0045930 GO:0046483 GO:0047485 GO:0048145 GO:0048285 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0051321 GO:0051716 GO:0051726 GO:0060249 GO:0061982 GO:0065007 GO:0065008 GO:0070013 GO:0071103 GO:0071214 GO:0071478 GO:0071479 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:0104004 GO:0140013 GO:1901360 GO:1901363 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902749 GO:1902750 GO:1903046 GO:1903047
KEGG Pathways
Metabolic & Signaling
ko03440 ko04218 map03440 map04218
Pfam Domains
Protein Families
BRCT FHA

Protein Analysis

502

Amino Acids

58.35

Weight (kDa)

8.22

Isoelectric Point (pI)

33.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 148 - 233 9.7e-20 zinc-binding in reverse transcriptase
RVT_3 PF13456 342 - 461 1.7e-28 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 31, 1181
AclWI GGATC 3 cut(s) 254, 588, 767
AcsI RAATTY 2 cut(s) 89, 440
AcuI CTGAAG 1 cut(s) 1167
AfaI GTAC 3 cut(s) 13, 115, 291
AfiI CCNNNNNNNGG 2 cut(s) 748, 1007
AgsI TTSAA 8 cut(s) 27, 95, 566, 739, 917, 934, 1175, 1291
AjnI CCWGG 1 cut(s) 1467
AjuI GAANNNNNNNTTGG 2 cut(s) 1370, 1402
AluBI AGCT 5 cut(s) 395, 1145, 1151, 1386, 1496
AluI AGCT 5 cut(s) 395, 1145, 1151, 1386, 1496
Alw26I GTCTC 1 cut(s) 816
AlwI GGATC 3 cut(s) 254, 588, 767
AlwNI CAGNNNCTG 1 cut(s) 398
AoxI GGCC 6 cut(s) 684, 1009, 1051, 1156, 1465, 1475
ApeKI GCWGC 2 cut(s) 421, 1114
ApoI RAATTY 2 cut(s) 89, 440
ArsI GACNNNNNNTTYG 2 cut(s) 1270, 1302
AseI ATTAAT 2 cut(s) 120, 128
Asp700I GAANNNNTTC 2 cut(s) 201, 442
AspA2I CCTAGG 1 cut(s) 1478
AspS9I GGNCC 4 cut(s) 236, 887, 1051, 1156
AsuHPI GGTGA 2 cut(s) 1142, 1483
AvaII GGWCC 2 cut(s) 236, 887
AvrII CCTAGG 1 cut(s) 1478
BbvI GCAGC 2 cut(s) 433, 1126
BccI CCATC 6 cut(s) 140, 298, 1025, 1444, 1457, 1477
BciT130I CCWGG 1 cut(s) 1469
BciVI GTATCC 1 cut(s) 386
BclI TGATCA 1 cut(s) 277
BcoDI GTCTC 1 cut(s) 816
BfaI CTAG 4 cut(s) 495, 972, 1400, 1479
BfmI CTRYAG 1 cut(s) 1294
BfuI GTATCC 1 cut(s) 386
BglII AGATCT 1 cut(s) 543
BisI GCNGC 2 cut(s) 422, 1115
BlnI CCTAGG 1 cut(s) 1478
BlsI GCNGC 2 cut(s) 423, 1116
Bme1390I CCNGG 1 cut(s) 1469
Bme18I GGWCC 2 cut(s) 236, 887
BmgT120I GGNCC 4 cut(s) 236, 887, 1051, 1156
BmiI GGNNCC 2 cut(s) 238, 1157
BmrFI CCNGG 1 cut(s) 1469
BplI GAGNNNNNCTC 2 cut(s) 1310, 1342
BpmI CTGGAG 1 cut(s) 978
BsaI GGTCTC 1 cut(s) 816
BsaJI CCNNGG 2 cut(s) 687, 1478
BsaXI ACNNNNNCTCC 2 cut(s) 1411, 1441
Bsc4I CCNNNNNNNGG 2 cut(s) 748, 1007
Bse1I ACTGG 1 cut(s) 1171
Bse3DI GCAATG 1 cut(s) 76
BseBI CCWGG 1 cut(s) 1469
BseDI CCNNGG 2 cut(s) 687, 1478
BseGI GGATG 5 cut(s) 309, 1036, 1213, 1459, 1488
BseLI CCNNNNNNNGG 2 cut(s) 748, 1007
BseMI GCAATG 1 cut(s) 76
BseMII CTCAG 1 cut(s) 342
BseNI ACTGG 1 cut(s) 1171
BseXI GCAGC 2 cut(s) 433, 1126
BshFI GGCC 6 cut(s) 686, 1011, 1053, 1158, 1467, 1477
BsiWI CGTACG 1 cut(s) 113
BslFI GGGAC 3 cut(s) 222, 332, 1291
BslI CCNNNNNNNGG 2 cut(s) 748, 1007
BsmAI GTCTC 1 cut(s) 816
BsmFI GGGAC 3 cut(s) 222, 332, 1291
BsnI GGCC 6 cut(s) 686, 1011, 1053, 1158, 1467, 1477
Bso31I GGTCTC 1 cut(s) 816
Bsp143I GATC 9 cut(s) 100, 259, 277, 543, 593, 640, 759, 984, 1298
BspACI CCGC 2 cut(s) 31, 1181
BspANI GGCC 6 cut(s) 686, 1011, 1053, 1158, 1467, 1477
BspCNI CTCAG 1 cut(s) 343
BspLI GGNNCC 2 cut(s) 238, 1157
BspMAI CTGCAG 1 cut(s) 1298
BspPI GGATC 3 cut(s) 254, 588, 767
BspTNI GGTCTC 1 cut(s) 816
BsrDI GCAATG 1 cut(s) 76
BsrI ACTGG 1 cut(s) 1171
BssECI CCNNGG 2 cut(s) 687, 1478
BssMI GATC 9 cut(s) 100, 259, 277, 543, 593, 640, 759, 984, 1298
BssT1I CCWWGG 2 cut(s) 687, 1478
Bst2UI CCWGG 1 cut(s) 1469
Bst4CI ACNGT 1 cut(s) 788
BstC8I GCNNGC 2 cut(s) 348, 1143
BstDEI CTNAG 3 cut(s) 351, 1038, 1372
BstENI CCTNNNNNAGG 1 cut(s) 1005
BstF5I GGATG 5 cut(s) 309, 1036, 1213, 1459, 1488
BstKTI GATC 9 cut(s) 103, 262, 280, 546, 596, 643, 762, 987, 1301
BstMAI GTCTC 1 cut(s) 816
BstMBI GATC 9 cut(s) 100, 259, 277, 543, 593, 640, 759, 984, 1298
BstMWI GCNNNNNNNGC 1 cut(s) 1198
BstNI CCWGG 1 cut(s) 1469
BstSCI CCNGG 1 cut(s) 1467
BstSFI CTRYAG 1 cut(s) 1294
BstV1I GCAGC 2 cut(s) 433, 1126
BstX2I RGATCY 2 cut(s) 543, 593
BstXI CCANNNNNNTGG 1 cut(s) 146
BstYI RGATCY 2 cut(s) 543, 593
BsuI GTATCC 1 cut(s) 386
BsuRI GGCC 6 cut(s) 686, 1011, 1053, 1158, 1467, 1477
BtsCI GGATG 5 cut(s) 309, 1036, 1213, 1459, 1488
BtsI GCAGTG 1 cut(s) 762
BtsIMutI CAGTG 1 cut(s) 762
Cac8I GCNNGC 2 cut(s) 348, 1143
CaiI CAGNNNCTG 1 cut(s) 398
Cfr13I GGNCC 4 cut(s) 236, 887, 1051, 1156
Csp6I GTAC 3 cut(s) 12, 114, 290
CviAII CATG 1 cut(s) 607
CviQI GTAC 3 cut(s) 12, 114, 290
DdeI CTNAG 3 cut(s) 351, 1038, 1372
DpnI GATC 9 cut(s) 102, 261, 279, 545, 595, 642, 761, 986, 1300
DpnII GATC 9 cut(s) 100, 259, 277, 543, 593, 640, 759, 984, 1298
DraI TTTAAA 2 cut(s) 883, 1018
Eco130I CCWWGG 2 cut(s) 687, 1478
Eco147I AGGCCT 1 cut(s) 1477
Eco31I GGTCTC 1 cut(s) 816
Eco47I GGWCC 2 cut(s) 236, 887
Eco57I CTGAAG 1 cut(s) 1167
EcoNI CCTNNNNNAGG 1 cut(s) 1005
EcoO109I RGGNCCY 2 cut(s) 887, 1156
EcoRII CCWGG 1 cut(s) 1467
EcoT14I CCWWGG 2 cut(s) 687, 1478
ErhI CCWWGG 2 cut(s) 687, 1478
FaeI CATG 1 cut(s) 610
FalI AAGNNNNNCTT 2 cut(s) 1370, 1402
FaqI GGGAC 3 cut(s) 222, 332, 1291
FatI CATG 1 cut(s) 606
FbaI TGATCA 1 cut(s) 277
Fnu4HI GCNGC 2 cut(s) 422, 1115
FokI GGATG 5 cut(s) 316, 1043, 1220, 1466, 1495
Fsp4HI GCNGC 2 cut(s) 422, 1115
FspBI CTAG 4 cut(s) 495, 972, 1400, 1479
GluI GCNGC 2 cut(s) 422, 1115
GsuI CTGGAG 1 cut(s) 978
HaeIII GGCC 6 cut(s) 686, 1011, 1053, 1158, 1467, 1477
Hin1II CATG 1 cut(s) 610
HindIII AAGCTT 1 cut(s) 1149
HphI GGTGA 2 cut(s) 1142, 1483
Hpy188I TCNGA 4 cut(s) 534, 1219, 1248, 1284
Hpy188III TCNNGA 5 cut(s) 211, 257, 495, 597, 957
HpyAV CCTTC 4 cut(s) 501, 594, 746, 1082
HpyCH4III ACNGT 1 cut(s) 788
HpyCH4V TGCA 9 cut(s) 81, 678, 727, 1101, 1114, 1141, 1192, 1296, 1410
HpyF10VI GCNNNNNNNGC 1 cut(s) 1198
HpyF3I CTNAG 3 cut(s) 351, 1038, 1372
Hsp92II CATG 1 cut(s) 610
Ksp22I TGATCA 1 cut(s) 277
Kzo9I GATC 9 cut(s) 100, 259, 277, 543, 593, 640, 759, 984, 1298
LmnI GCTCC 1 cut(s) 1331
Lsp1109I GCAGC 2 cut(s) 433, 1126
MaeI CTAG 4 cut(s) 495, 972, 1400, 1479
MaeIII GTNAC 5 cut(s) 3, 472, 718, 1162, 1489
MalI GATC 9 cut(s) 102, 261, 279, 545, 595, 642, 761, 986, 1300
MboI GATC 9 cut(s) 100, 259, 277, 543, 593, 640, 759, 984, 1298
MboII GAAGA 6 cut(s) 44, 47, 320, 538, 905, 1006
MfeI CAATTG 2 cut(s) 622, 815
MflI RGATCY 2 cut(s) 543, 593
MlyI GAGTC 2 cut(s) 1273, 1328
MmeI TCCRAC 1 cut(s) 971
MroXI GAANNNNTTC 2 cut(s) 201, 442
MseI TTAA 8 cut(s) 120, 128, 804, 882, 1017, 1023, 1197, 1332
MslI CAYNNNNRTG 2 cut(s) 144, 1206
MspR9I CCNGG 1 cut(s) 1469
MunI CAATTG 2 cut(s) 622, 815
MvaI CCWGG 1 cut(s) 1469
MwoI GCNNNNNNNGC 1 cut(s) 1198
NdeII GATC 9 cut(s) 100, 259, 277, 543, 593, 640, 759, 984, 1298
NlaIII CATG 1 cut(s) 610
NlaIV GGNNCC 2 cut(s) 238, 1157
NmuCI GTSAC 1 cut(s) 1162
PceI AGGCCT 1 cut(s) 1477
PdmI GAANNNNTTC 2 cut(s) 201, 442
PfeI GAWTC 8 cut(s) 23, 197, 517, 650, 962, 1214, 1309, 1438
Pfl23II CGTACG 1 cut(s) 113
PkrI GCNGC 2 cut(s) 423, 1116
PleI GAGTC 2 cut(s) 1273, 1327
PpsI GAGTC 2 cut(s) 1273, 1327
PpuMI RGGWCCY 1 cut(s) 887
PshBI ATTAAT 2 cut(s) 120, 128
Psp5II RGGWCCY 1 cut(s) 887
Psp6I CCWGG 1 cut(s) 1467
PspGI CCWGG 1 cut(s) 1467
PspLI CGTACG 1 cut(s) 113
PspN4I GGNNCC 2 cut(s) 238, 1157
PspPI GGNCC 4 cut(s) 236, 887, 1051, 1156
PspPPI RGGWCCY 1 cut(s) 887
PstI CTGCAG 1 cut(s) 1298
PstNI CAGNNNCTG 1 cut(s) 398
PsuI RGATCY 2 cut(s) 543, 593
RsaI GTAC 3 cut(s) 13, 115, 291
RsaNI GTAC 3 cut(s) 12, 114, 290
RseI CAYNNNNRTG 2 cut(s) 144, 1206
SaqAI TTAA 8 cut(s) 120, 128, 804, 882, 1017, 1023, 1197, 1332
SatI GCNGC 2 cut(s) 422, 1115
Sau3AI GATC 9 cut(s) 100, 259, 277, 543, 593, 640, 759, 984, 1298
Sau96I GGNCC 4 cut(s) 236, 887, 1051, 1156
SchI GAGTC 2 cut(s) 1273, 1328
ScrFI CCNGG 1 cut(s) 1469
SfcI CTRYAG 1 cut(s) 1294
SinI GGWCC 2 cut(s) 236, 887
SmiMI CAYNNNNRTG 2 cut(s) 144, 1206
SseBI AGGCCT 1 cut(s) 1477
SsiI CCGC 2 cut(s) 31, 1181
SspMI CTAG 4 cut(s) 495, 972, 1400, 1479
StuI AGGCCT 1 cut(s) 1477
StyD4I CCNGG 1 cut(s) 1467
StyI CCWWGG 2 cut(s) 687, 1478
TaaI ACNGT 1 cut(s) 788
TfiI GAWTC 8 cut(s) 23, 197, 517, 650, 962, 1214, 1309, 1438
Tru1I TTAA 8 cut(s) 120, 128, 804, 882, 1017, 1023, 1197, 1332
Tru9I TTAA 8 cut(s) 120, 128, 804, 882, 1017, 1023, 1197, 1332
TscAI CASTG 1 cut(s) 769
TseFI GTSAC 1 cut(s) 1162
TseI GCWGC 2 cut(s) 421, 1114
Tsp45I GTSAC 1 cut(s) 1162
TspDTI ATGAA 7 cut(s) 194, 650, 663, 829, 1101, 1322, 1331
TspGWI ACGGA 1 cut(s) 1419
TspRI CASTG 1 cut(s) 769
VpaK11BI GGWCC 2 cut(s) 236, 887
VspI ATTAAT 2 cut(s) 120, 128
XagI CCTNNNNNAGG 1 cut(s) 1005
XapI RAATTY 2 cut(s) 89, 440
XbaI TCTAGA 1 cut(s) 494
XcmI CCANNNNNNNNNTGG 1 cut(s) 1061
XmaJI CCTAGG 1 cut(s) 1478
XmnI GAANNNNTTC 2 cut(s) 201, 442
XspI CTAG 4 cut(s) 495, 972, 1400, 1479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.