Rh7BG476900

Forkhead associated domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0004815
Physical Location & Seq
Reverse (-)
56214748 .. 56233523
18776 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG476900.1

Sequence Viewer

Length: 1539 bp
ATGGTTTGGGGTTTCTTCCCCGCCGACCCCCTCTCAGGTGAGGATACATACTATATCTTTGCTACAGGAACTTACAAAGTGGGTCGGAAAGGTTGTGATGTAAATATTGCAAAAGACAAAGGAGTTTCTAGGGTCCATGCAGAAATAATTGTTGATTCAATGATATCAGCTCTCCCTCGGCAAACTAAATATTCTGTTTTATCCTCCAAAGTCCGAATTAGAGATTGCTCAAAATATGGAACGTATATTAACAAGAACCTTACATCAGTGGAGAAGATTCATGAGTTACCGAATAAAGAAACATCATTGAGAGATGGGGACATGGTTTCATTTGGAACTGGTACTGCTGTCTTCAGATTTTCCTTTGTTCCCCTTATTTTGTTTGCATGCTGCCCGGAAAAATCTCAAGTGAATCATCCTCTTCAAGAGAAAATTTCATCAATCGGTGCTCGCATCACCTATCATTGGAGTCAGGAGTGCACGCATGTGCTTGTTGACCAAGTCATGCCAATGAAAGAAGATCTACTGGATGGTATTATGGAGAAGAAACCTTTCGTAGTTGGAAGTTGGGTTGAGTTTGTTGCAGAGAAGAACATTCTCACTGAGTTTCCTAGTTACACACCCTTTTCTCCAACAATGACCGTGGAAGGAATATCGGTCAAACTTGCGGACCCAAGAAGTCGAGAAAACTGTTTAAAAGGATATACATTTTTGTTGGACTCAACACTAGTGTATAAATTCGGTGATCGGTTGCAGTCCTTACTAGAAGTCAGTGGTGCAGAGATTCTTTTAATTGAAGGATTTAAATCAAAAAGCCAAATCCCAGATTGCGCAGTCAGTGATCGTGTTGTGTGTGTTGTCCCAGAACGGGTGTCCGATGATTTCTCTGATAAGCTTGGTTCACTATTACGAGTGAATGAACTGGGCTTATTATGTGCCATATTGAATGGACGGCTGGATCCATGTCTGTTCAAATCACCTTGCGTAGTTGTCTCATCTTCATGCTCCACAGATGAAACTGTGGTAGCTGATTCTGATGTAGAAGAAACAGCCACATCAGTTCTGCCAACTGCATCTGTTGGCACTGGAGTTGTTGAAAATGTGCCCCATGCAGTTACCAAATCGGAGAATAACTTTGTCATGAGCTCTAGACGCAGTAGTGACATATCTACCATAAGAGGCAAGCTTGATGATTCTGAAAGTGGGATTGCTGATATTATTTATAGCCAAGATTTGATTGCACGAGATAAGAGCATACCTTGTACCGTTGTGACTAGTGCAAACAACAGATTCATAAATTTCAAACGCTTCAGAAAGACAAATATTCAGTCTGGGAATAGCTTCAACAATCTTATTCCATTCTCCAAGGACCCATATAATGATTCTGACTATGGGAGTGAGGAAGTGGTTCAGTCTGTGAAGGACGAGAAAAGGAGAAAGCACATGGAAGCCATCTCTGAAGAATTATTTAATAATGAACAGGGTCGACGTCGTGGTGTAGCTGGCTCTCTTCATGGGATTCTTAGTCATGGAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000075 GO:0000077 GO:0000228 GO:0000278 GO:0000280 GO:0000723 GO:0000724 GO:0000725 GO:0000781 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007093 GO:0007095 GO:0007127 GO:0007131 GO:0007154 GO:0007165 GO:0007346 GO:0008134 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0010389 GO:0010564 GO:0010948 GO:0010972 GO:0016043 GO:0016233 GO:0016234 GO:0022402 GO:0022414 GO:0023052 GO:0030870 GO:0031570 GO:0031572 GO:0031974 GO:0031981 GO:0032200 GO:0032392 GO:0032508 GO:0032991 GO:0033554 GO:0034641 GO:0035556 GO:0035825 GO:0042127 GO:0042405 GO:0042592 GO:0042770 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044773 GO:0044774 GO:0044818 GO:0045786 GO:0045930 GO:0046483 GO:0047485 GO:0048145 GO:0048285 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0051321 GO:0051716 GO:0051726 GO:0060249 GO:0061982 GO:0065007 GO:0065008 GO:0070013 GO:0071103 GO:0071214 GO:0071478 GO:0071479 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:0104004 GO:0140013 GO:1901360 GO:1901363 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902749 GO:1902750 GO:1903046 GO:1903047
KEGG Pathways
Metabolic & Signaling
ko03440 ko04218 map03440 map04218
Pfam Domains
Protein Families
BRCT FHA

Protein Analysis

512

Amino Acids

56.7

Weight (kDa)

5.95

Isoelectric Point (pI)

43.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FHA PF00498 25 - 112 4e-10 FHA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1492
Acc16I TGCGCA 1 cut(s) 832
AccI GTMKAC 1 cut(s) 1486
AciI CCGC 2 cut(s) 21, 668
AclWI GGATC 2 cut(s) 953, 966
AcsI RAATTY 3 cut(s) 432, 737, 1297
AcuI CTGAAG 3 cut(s) 337, 1294, 1479
AcyI GRCGYC 1 cut(s) 1489
AfaI GTAC 2 cut(s) 343, 1264
AfiI CCNNNNNNNGG 3 cut(s) 35, 465, 868
AgsI TTSAA 8 cut(s) 159, 425, 797, 946, 973, 1097, 1303, 1345
AhlI ACTAGT 2 cut(s) 727, 1274
AleI CACNNNNGTG 1 cut(s) 485
AluBI AGCT 7 cut(s) 170, 895, 1028, 1146, 1186, 1341, 1502
AluI AGCT 7 cut(s) 170, 895, 1028, 1146, 1186, 1341, 1502
Alw21I GWGCWC 3 cut(s) 451, 482, 1148
Alw26I GTCTC 1 cut(s) 997
Alw44I GTGCAC 1 cut(s) 478
AlwI GGATC 2 cut(s) 953, 966
ApaLI GTGCAC 1 cut(s) 478
ApeKI GCWGC 1 cut(s) 390
ApoI RAATTY 3 cut(s) 432, 737, 1297
ArsI GACNNNNNNTTYG 2 cut(s) 1313, 1345
Asp700I GAANNNNTTC 3 cut(s) 551, 1340, 1407
AspLEI GCGC 1 cut(s) 833
AspS9I GGNCC 3 cut(s) 133, 670, 1369
AsuC2I CCSGG 1 cut(s) 395
AsuHPI GGTGA 4 cut(s) 50, 448, 755, 969
AvaII GGWCC 3 cut(s) 133, 670, 1369
BaeGI GKGCMC 2 cut(s) 482, 1107
BaeI ACNNNNGTAYC 2 cut(s) 333, 366
BamHI GGATCC 1 cut(s) 958
BanII GRGCYC 1 cut(s) 1148
BauI CACGAG 1 cut(s) 1242
BbsI GAAGAC 1 cut(s) 343
Bbv12I GWGCWC 3 cut(s) 451, 482, 1148
BbvI GCAGC 1 cut(s) 377
BccI CCATC 3 cut(s) 308, 524, 1460
BceAI ACGGC 1 cut(s) 968
BciVI GTATCC 1 cut(s) 37
BcnI CCSGG 1 cut(s) 395
BcoDI GTCTC 1 cut(s) 997
BcuI ACTAGT 2 cut(s) 727, 1274
BfaI CTAG 6 cut(s) 129, 612, 728, 764, 1149, 1275
BfmI CTRYAG 1 cut(s) 63
BfuI GTATCC 1 cut(s) 37
BglII AGATCT 1 cut(s) 520
BisI GCNGC 1 cut(s) 391
BlsI GCNGC 1 cut(s) 392
Bme1390I CCNGG 1 cut(s) 395
Bme18I GGWCC 3 cut(s) 133, 670, 1369
BmgT120I GGNCC 3 cut(s) 133, 670, 1369
BmiI GGNNCC 4 cut(s) 134, 672, 960, 1371
BmrFI CCNGG 1 cut(s) 395
BmrI ACTGGG 1 cut(s) 932
BmsI GCATC 2 cut(s) 462, 1082
BmuI ACTGGG 1 cut(s) 932
BpiI GAAGAC 1 cut(s) 343
BpmI CTGGAG 1 cut(s) 1107
BpuEI CTTGAG 1 cut(s) 390
BpuMI CCSGG 1 cut(s) 395
BsaBI GATNNNNATC 1 cut(s) 805
BsaHI GRCGYC 1 cut(s) 1489
BsaJI CCNNGG 3 cut(s) 176, 642, 1365
Bsc4I CCNNNNNNNGG 3 cut(s) 35, 465, 868
Bse1I ACTGG 4 cut(s) 343, 531, 927, 1090
Bse8I GATNNNNATC 1 cut(s) 805
BseDI CCNNGG 3 cut(s) 176, 642, 1365
BseGI GGATG 2 cut(s) 415, 535
BseJI GATNNNNATC 1 cut(s) 805
BseLI CCNNNNNNNGG 3 cut(s) 35, 465, 868
BseMII CTCAG 2 cut(s) 48, 594
BseNI ACTGG 4 cut(s) 343, 531, 927, 1090
BseSI GKGCMC 2 cut(s) 482, 1107
BseXI GCAGC 1 cut(s) 377
BsgI GTGCAG 1 cut(s) 798
BsiHKAI GWGCWC 3 cut(s) 451, 482, 1148
BsiSI CCGG 1 cut(s) 395
BslFI GGGAC 2 cut(s) 332, 845
BslI CCNNNNNNNGG 3 cut(s) 35, 465, 868
BsmAI GTCTC 1 cut(s) 997
BsmFI GGGAC 2 cut(s) 332, 845
Bsp1286I GDGCHC 4 cut(s) 451, 482, 1107, 1148
Bsp143I GATC 4 cut(s) 520, 745, 841, 958
BspACI CCGC 2 cut(s) 21, 668
BspCNI CTCAG 2 cut(s) 47, 595
BspHI TCATGA 2 cut(s) 280, 1140
BspLI GGNNCC 4 cut(s) 134, 672, 960, 1371
BspPI GGATC 2 cut(s) 953, 966
BsrI ACTGG 4 cut(s) 343, 531, 927, 1090
BssECI CCNNGG 3 cut(s) 176, 642, 1365
BssMI GATC 4 cut(s) 520, 745, 841, 958
BssNI GRCGYC 1 cut(s) 1489
BssSI CACGAG 1 cut(s) 1242
BssT1I CCWWGG 1 cut(s) 1365
Bst2BI CACGAG 1 cut(s) 1242
Bst4CI ACNGT 4 cut(s) 643, 692, 1021, 1267
Bst6I CTCTTC 2 cut(s) 426, 1515
BstACI GRCGYC 1 cut(s) 1489
BstC8I GCNNGC 5 cut(s) 388, 451, 482, 1184, 1504
BstDEI CTNAG 3 cut(s) 34, 603, 1523
BstDSI CCRYGG 1 cut(s) 642
BstF5I GGATG 2 cut(s) 415, 535
BstHHI GCGC 1 cut(s) 833
BstKTI GATC 4 cut(s) 523, 748, 844, 961
BstMAI GTCTC 1 cut(s) 997
BstMBI GATC 4 cut(s) 520, 745, 841, 958
BstMWI GCNNNNNNNGC 1 cut(s) 1152
BstNSI RCATGY 2 cut(s) 390, 488
BstSCI CCNGG 1 cut(s) 393
BstSFI CTRYAG 1 cut(s) 63
BstSLI GKGCMC 2 cut(s) 482, 1107
BstV1I GCAGC 1 cut(s) 377
BstV2I GAAGAC 1 cut(s) 343
BstX2I RGATCY 2 cut(s) 520, 958
BstYI RGATCY 2 cut(s) 520, 958
BsuI GTATCC 1 cut(s) 37
BtgI CCRYGG 1 cut(s) 642
BtsCI GGATG 2 cut(s) 415, 535
BtsIMutI CAGTG 5 cut(s) 273, 600, 778, 844, 1083
Cac8I GCNNGC 5 cut(s) 388, 451, 482, 1184, 1504
CciI TCATGA 2 cut(s) 280, 1140
CfoI GCGC 1 cut(s) 833
Cfr13I GGNCC 3 cut(s) 133, 670, 1369
CseI GACGC 1 cut(s) 1161
Csp6I GTAC 2 cut(s) 342, 1263
CspCI CAANNNNNGTGG 2 cut(s) 624, 659
CviQI GTAC 2 cut(s) 342, 1263
DdeI CTNAG 3 cut(s) 34, 603, 1523
DpnI GATC 4 cut(s) 522, 747, 843, 960
DpnII GATC 4 cut(s) 520, 745, 841, 958
DraI TTTAAA 2 cut(s) 696, 805
Eam1104I CTCTTC 2 cut(s) 426, 1515
EarI CTCTTC 2 cut(s) 426, 1515
Ecl136II GAGCTC 1 cut(s) 1146
Eco130I CCWWGG 1 cut(s) 1365
Eco24I GRGCYC 1 cut(s) 1148
Eco32I GATATC 1 cut(s) 165
Eco47I GGWCC 3 cut(s) 133, 670, 1369
Eco53kI GAGCTC 1 cut(s) 1146
Eco57I CTGAAG 3 cut(s) 337, 1294, 1479
EcoICRI GAGCTC 1 cut(s) 1146
EcoO109I RGGNCCY 1 cut(s) 1369
EcoRV GATATC 1 cut(s) 165
EcoT14I CCWWGG 1 cut(s) 1365
EcoT38I GRGCYC 1 cut(s) 1148
ErhI CCWWGG 1 cut(s) 1365
FaqI GGGAC 2 cut(s) 332, 845
FauI CCCGC 1 cut(s) 28
FblI GTMKAC 1 cut(s) 1486
Fnu4HI GCNGC 1 cut(s) 391
FokI GGATG 2 cut(s) 402, 542
FriOI GRGCYC 1 cut(s) 1148
Fsp4HI GCNGC 1 cut(s) 391
FspBI CTAG 6 cut(s) 129, 612, 728, 764, 1149, 1275
FspI TGCGCA 1 cut(s) 832
GlaI GCGC 1 cut(s) 832
GluI GCNGC 1 cut(s) 391
GsuI CTGGAG 1 cut(s) 1107
HapII CCGG 1 cut(s) 395
HgaI GACGC 1 cut(s) 1161
HhaI GCGC 1 cut(s) 833
Hin1I GRCGYC 1 cut(s) 1489
Hin6I GCGC 1 cut(s) 831
HinP1I GCGC 1 cut(s) 831
HincII GTYRAC 2 cut(s) 496, 1487
HindII GTYRAC 2 cut(s) 496, 1487
HindIII AAGCTT 2 cut(s) 893, 1184
HpaII CCGG 1 cut(s) 395
HphI GGTGA 4 cut(s) 50, 448, 755, 969
Hpy166II GTNNAC 4 cut(s) 480, 496, 902, 1487
Hpy188III TCNNGA 6 cut(s) 281, 425, 473, 683, 1141, 1149
Hpy8I GTNNAC 4 cut(s) 480, 496, 902, 1487
Hpy99I CGWCG 2 cut(s) 1491, 1494
HpyAV CCTTC 3 cut(s) 641, 791, 1414
HpyCH4III ACNGT 4 cut(s) 643, 692, 1021, 1267
HpyCH4IV ACGT 2 cut(s) 242, 1489
HpyF10VI GCNNNNNNNGC 1 cut(s) 1152
HpyF3I CTNAG 3 cut(s) 34, 603, 1523
HpySE526I ACGT 2 cut(s) 242, 1489
Hsp92I GRCGYC 1 cut(s) 1489
HspAI GCGC 1 cut(s) 831
Kzo9I GATC 4 cut(s) 520, 745, 841, 958
LmnI GCTCC 1 cut(s) 1010
Lsp1109I GCAGC 1 cut(s) 377
LweI GCATC 2 cut(s) 462, 1082
MaeI CTAG 6 cut(s) 129, 612, 728, 764, 1149, 1275
MaeII ACGT 2 cut(s) 242, 1489
MaeIII GTNAC 5 cut(s) 285, 614, 1114, 1160, 1270
MalI GATC 4 cut(s) 522, 747, 843, 960
MboI GATC 4 cut(s) 520, 745, 841, 958
MflI RGATCY 2 cut(s) 520, 958
MhlI GDGCHC 4 cut(s) 451, 482, 1107, 1148
MluCI AATT 7 cut(s) 147, 216, 432, 737, 792, 1297, 1463
MlyI GAGTC 2 cut(s) 478, 713
MmeI TCCRAC 4 cut(s) 65, 541, 656, 696
MnlI CCTC 7 cut(s) 34, 41, 186, 214, 429, 1172, 1393
MroXI GAANNNNTTC 3 cut(s) 551, 1340, 1407
MseI TTAA 5 cut(s) 249, 695, 791, 804, 1470
MslI CAYNNNNRTG 3 cut(s) 485, 509, 1000
MspI CCGG 1 cut(s) 395
MspR9I CCNGG 1 cut(s) 395
MwoI GCNNNNNNNGC 1 cut(s) 1152
NciI CCSGG 1 cut(s) 395
NdeII GATC 4 cut(s) 520, 745, 841, 958
NlaIV GGNNCC 4 cut(s) 134, 672, 960, 1371
NmeAIII GCCGAG 1 cut(s) 157
NmuCI GTSAC 2 cut(s) 1160, 1270
NsbI TGCGCA 1 cut(s) 832
NspI RCATGY 2 cut(s) 390, 488
OliI CACNNNNGTG 1 cut(s) 485
PaeI GCATGC 1 cut(s) 390
PagI TCATGA 2 cut(s) 280, 1140
PdmI GAANNNNTTC 3 cut(s) 551, 1340, 1407
PfeI GAWTC 9 cut(s) 155, 277, 412, 784, 1031, 1193, 1290, 1382, 1519
PflFI GACNNNGTC 1 cut(s) 500
PkrI GCNGC 1 cut(s) 392
PleI GAGTC 2 cut(s) 477, 713
PpsI GAGTC 2 cut(s) 477, 713
PpuMI RGGWCCY 1 cut(s) 1369
Psp124BI GAGCTC 1 cut(s) 1148
Psp5II RGGWCCY 1 cut(s) 1369
PspN4I GGNNCC 4 cut(s) 134, 672, 960, 1371
PspPI GGNCC 3 cut(s) 133, 670, 1369
PspPPI RGGWCCY 1 cut(s) 1369
PsuI RGATCY 2 cut(s) 520, 958
PsyI GACNNNGTC 1 cut(s) 500
RsaI GTAC 2 cut(s) 343, 1264
RsaNI GTAC 2 cut(s) 342, 1263
RseI CAYNNNNRTG 3 cut(s) 485, 509, 1000
SacI GAGCTC 1 cut(s) 1148
SalI GTCGAC 1 cut(s) 1485
SaqAI TTAA 5 cut(s) 249, 695, 791, 804, 1470
SatI GCNGC 1 cut(s) 391
Sau3AI GATC 4 cut(s) 520, 745, 841, 958
Sau96I GGNCC 3 cut(s) 133, 670, 1369
SchI GAGTC 2 cut(s) 478, 713
ScrFI CCNGG 1 cut(s) 395
SduI GDGCHC 4 cut(s) 451, 482, 1107, 1148
SfaNI GCATC 2 cut(s) 462, 1082
SfcI CTRYAG 1 cut(s) 63
SinI GGWCC 3 cut(s) 133, 670, 1369
SmiI ATTTAAAT 1 cut(s) 805
SmiMI CAYNNNNRTG 3 cut(s) 485, 509, 1000
SmlI CTYRAG 1 cut(s) 405
SmoI CTYRAG 1 cut(s) 405
SpeI ACTAGT 2 cut(s) 727, 1274
SphI GCATGC 1 cut(s) 390
Sse9I AATT 7 cut(s) 147, 216, 432, 737, 792, 1297, 1463
SsiI CCGC 2 cut(s) 21, 668
SspI AATATT 3 cut(s) 106, 191, 1324
SspMI CTAG 6 cut(s) 129, 612, 728, 764, 1149, 1275
SstI GAGCTC 1 cut(s) 1148
StyD4I CCNGG 1 cut(s) 393
StyI CCWWGG 1 cut(s) 1365
SwaI ATTTAAAT 1 cut(s) 805
TaaI ACNGT 4 cut(s) 643, 692, 1021, 1267
TaiI ACGT 2 cut(s) 245, 1492
TaqI TCGA 2 cut(s) 682, 1486
TaqII GACCGA 1 cut(s) 646
TasI AATT 7 cut(s) 147, 216, 432, 737, 792, 1297, 1463
TfiI GAWTC 9 cut(s) 155, 277, 412, 784, 1031, 1193, 1290, 1382, 1519
Tru1I TTAA 5 cut(s) 249, 695, 791, 804, 1470
Tru9I TTAA 5 cut(s) 249, 695, 791, 804, 1470
TscAI CASTG 5 cut(s) 273, 607, 778, 844, 1090
TseFI GTSAC 2 cut(s) 1160, 1270
TseI GCWGC 1 cut(s) 390
Tsp45I GTSAC 2 cut(s) 1160, 1270
TspRI CASTG 5 cut(s) 273, 607, 778, 844, 1090
Tth111I GACNNNGTC 1 cut(s) 500
VneI GTGCAC 1 cut(s) 478
VpaK11BI GGWCC 3 cut(s) 133, 670, 1369
XapI RAATTY 3 cut(s) 432, 737, 1297
XbaI TCTAGA 1 cut(s) 1148
XceI RCATGY 2 cut(s) 390, 488
XmiI GTMKAC 1 cut(s) 1486
XmnI GAANNNNTTC 3 cut(s) 551, 1340, 1407
XspI CTAG 6 cut(s) 129, 612, 728, 764, 1149, 1275
ZraI GACGTC 1 cut(s) 1490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.