Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004815

Physical Location & Seq

Genomic Coordinates Forward (+)

38785549 .. 38786364

Gene Structure 816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0350100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGCAACACAATCTTTAGCTCCGTCAAATCCTGAGGTAACAGCACAATTGGAGTGTAAAAAGAAAGCTTGCTGCAGGTATCTGCTGGAGCGTCTATGGTGGATAGGGTTCATTAAAGCAGGAATTTTTTTGAATCCAATTGTCAGGCCTATCAATTACCCTGCATTCTATGAGTGGGGAACGAGGTCAAATTTGATTTACACAGACAAGGATATTGATGAGATCCGAGTGGAATGGGCTAAGCATGTTTTGAAGTTCCCAGAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000075 GO:0000077 GO:0000228 GO:0000278 GO:0000280 GO:0000723 GO:0000724 GO:0000725 GO:0000781 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007093 GO:0007095 GO:0007127 GO:0007131 GO:0007154 GO:0007165 GO:0007346 GO:0008134 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0010389 GO:0010564 GO:0010948 GO:0010972 GO:0016043 GO:0016233 GO:0016234 GO:0022402 GO:0022414 GO:0023052 GO:0030870 GO:0031570 GO:0031572 GO:0031974 GO:0031981 GO:0032200 GO:0032392 GO:0032508 GO:0032991 GO:0033554 GO:0034641 GO:0035556 GO:0035825 GO:0042127 GO:0042405 GO:0042592 GO:0042770 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044773 GO:0044774 GO:0044818 GO:0045786 GO:0045930 GO:0046483 GO:0047485 GO:0048145 GO:0048285 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0051321 GO:0051716 GO:0051726 GO:0060249 GO:0061982 GO:0065007 GO:0065008 GO:0070013 GO:0071103 GO:0071214 GO:0071478 GO:0071479 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:0104004 GO:0140013 GO:1901360 GO:1901363 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902749 GO:1902750 GO:1903046 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko03440 ko04218 map03440 map04218

Pfam Domains

Protein Families

BRCT FHA

Protein Analysis

89

Amino Acids

10.46

Weight (kDa)

8.49

Isoelectric Point (pI)

38.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004815)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02680
fragaria_vesca	FvH4_5g39750 FvH4_5g39750 FvH4_5g39750 FvH4_5g39750 FvH4_5g39750 FvH4_5g39750 FvH4_5g39750 FvH4_5g39750 FvH4_5g39750 FvH4_5g39750
malus_domestica	MD09G1187400.v1.1
prunus_persica	Prupe.8G267600_v2.0.a1 Prupe.8G267600_v2.0.a1 Prupe.8G267600_v2.0.a1 Prupe.8G267600_v2.0.a1 Prupe.8G267600_v2.0.a1
pyrus_communis	pycom11g27760
rosa_chinensis	RchiOBHm_Chr7g0242051
rosa_laevigata	RLG00000000513
rosa_multiflora	Rmu_sc0003559.1_g000029
rosa_roxburghii	Rroxscaffold_3G00218250
rosa_rugosa	Rorug07G0350000 Rorug07G0350100 Rorug07G0350200 Rorug07G0350300
rosa_samantha	Rh7AG505100 Rh7BG476900 Rh7CG521300 Rh7DG490400
rosa_wichuraiana	Rw7G042680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	66
AclWI	GGATC	1 cut(s)	217
AcsI	RAATTY	2 cut(s)	123, 190
AgsI	TTSAA	2 cut(s)	133, 253
AluBI	AGCT	2 cut(s)	20, 68
AluI	AGCT	2 cut(s)	20, 68
AlwI	GGATC	1 cut(s)	217
AoxI	GGCC	1 cut(s)	146
ApeKI	GCWGC	1 cut(s)	72
ApoI	RAATTY	2 cut(s)	123, 190
AxyI	CCTNAGG	1 cut(s)	33
BbvI	GCAGC	1 cut(s)	59
BfmI	CTRYAG	1 cut(s)	73
BfuAI	ACCTGC	1 cut(s)	66
BisI	GCNGC	1 cut(s)	73
BlpI	GCTNAGC	1 cut(s)	240
BlsI	GCNGC	1 cut(s)	74
BpmI	CTGGAG	1 cut(s)	107
Bpu1102I	GCTNAGC	1 cut(s)	240
Bse21I	CCTNAGG	1 cut(s)	33
BseMII	CTCAG	1 cut(s)	24
BseXI	GCAGC	1 cut(s)	59
BshFI	GGCC	1 cut(s)	148
BsmI	GAATGC	1 cut(s)	164
BsnI	GGCC	1 cut(s)	148
Bsp143I	GATC	1 cut(s)	222
Bsp1720I	GCTNAGC	1 cut(s)	240
BspANI	GGCC	1 cut(s)	148
BspCNI	CTCAG	1 cut(s)	25
BspMAI	CTGCAG	1 cut(s)	77
BspMI	ACCTGC	1 cut(s)	66
BspPI	GGATC	1 cut(s)	217
BssMI	GATC	1 cut(s)	222
BstC8I	GCNNGC	1 cut(s)	70
BstDEI	CTNAG	2 cut(s)	33, 240
BstKTI	GATC	1 cut(s)	225
BstMBI	GATC	1 cut(s)	222
BstNSI	RCATGY	1 cut(s)	248
BstSFI	CTRYAG	1 cut(s)	73
BstV1I	GCAGC	1 cut(s)	59
BstX2I	RGATCY	1 cut(s)	222
BstYI	RGATCY	1 cut(s)	222
Bsu36I	CCTNAGG	1 cut(s)	33
BsuRI	GGCC	1 cut(s)	148
BveI	ACCTGC	1 cut(s)	66
Cac8I	GCNNGC	1 cut(s)	70
CseI	GACGC	1 cut(s)	80
CviAII	CATG	1 cut(s)	245
CviJI	RGCY	4 cut(s)	20, 68, 148, 239
CviKI_1	RGCY	4 cut(s)	20, 68, 148, 239
DdeI	CTNAG	2 cut(s)	33, 240
DpnI	GATC	1 cut(s)	224
DpnII	GATC	1 cut(s)	222
Eco147I	AGGCCT	1 cut(s)	148
Eco81I	CCTNAGG	1 cut(s)	33
FaeI	CATG	1 cut(s)	248
FaiI	YATR	3 cut(s)	97, 171, 246
FatI	CATG	1 cut(s)	244
Fnu4HI	GCNGC	1 cut(s)	73
Fsp4HI	GCNGC	1 cut(s)	73
GluI	GCNGC	1 cut(s)	73
GsuI	CTGGAG	1 cut(s)	107
HaeIII	GGCC	1 cut(s)	148
HgaI	GACGC	1 cut(s)	80
Hin1II	CATG	1 cut(s)	248
HindIII	AAGCTT	1 cut(s)	66
HinfI	GANTC	1 cut(s)	133
Hpy188I	TCNGA	1 cut(s)	227
Hpy188III	TCNNGA	1 cut(s)	32
HpyCH4V	TGCA	2 cut(s)	75, 164
HpyF3I	CTNAG	2 cut(s)	33, 240
Hsp92II	CATG	1 cut(s)	248
Kzo9I	GATC	1 cut(s)	222
LmnI	GCTCC	2 cut(s)	25, 88
LpnPI	CCDG	6 cut(s)	45, 61, 71, 105, 130, 174
Lsp1109I	GCAGC	1 cut(s)	59
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	1 cut(s)	224
MboI	GATC	1 cut(s)	222
MfeI	CAATTG	2 cut(s)	47, 138
MflI	RGATCY	1 cut(s)	222
MluCI	AATT	6 cut(s)	47, 123, 138, 154, 190, 265
MnlI	CCTC	2 cut(s)	28, 177
MseI	TTAA	2 cut(s)	114, 268
MunI	CAATTG	2 cut(s)	47, 138
Mva1269I	GAATGC	1 cut(s)	164
NdeII	GATC	1 cut(s)	222
NlaIII	CATG	1 cut(s)	248
NspI	RCATGY	1 cut(s)	248
PceI	AGGCCT	1 cut(s)	148
PctI	GAATGC	1 cut(s)	164
PfeI	GAWTC	1 cut(s)	133
PkrI	GCNGC	1 cut(s)	74
PstI	CTGCAG	1 cut(s)	77
PsuI	RGATCY	1 cut(s)	222
SaqAI	TTAA	2 cut(s)	114, 268
SatI	GCNGC	1 cut(s)	73
Sau3AI	GATC	1 cut(s)	222
SetI	ASST	5 cut(s)	22, 39, 70, 80, 188
SfcI	CTRYAG	1 cut(s)	73
Sse9I	AATT	6 cut(s)	47, 123, 138, 154, 190, 265
SseBI	AGGCCT	1 cut(s)	148
StuI	AGGCCT	1 cut(s)	148
TasI	AATT	6 cut(s)	47, 123, 138, 154, 190, 265
TfiI	GAWTC	1 cut(s)	133
Tru1I	TTAA	2 cut(s)	114, 268
Tru9I	TTAA	2 cut(s)	114, 268
TseI	GCWGC	1 cut(s)	72
TspDTI	ATGAA	1 cut(s)	100
TspGWI	ACGGA	1 cut(s)	12
XapI	RAATTY	2 cut(s)	123, 190
XceI	RCATGY	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.