Rorug07G0350300

Forkhead associated domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0004815
Physical Location & Seq
Forward (+)
38828470 .. 38829256
787 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0350300.1

Sequence Viewer

Length: 717 bp
ATGGGTAAACATCAAGTTAGATGGAGGACTGATAAGGGATCGCTCAACCTAGCAATCTGGGTCGCGGATGCACCGCGATTGGGTTTAGGCCACCTGATACCCTTGCTCGAGCTGGCCAAAGGACTCGTCGTCCACCACAACTTCACAGTCACCTTCCTCATCCCTAACGACGGTACGAACCTGACACCGCAAAAGAAAGTCCTGGAAGCTTTGCCGGAGAGCATATCCTTCACCTTCCTCCCTCCAGTCAACTTCGACGACCTCCCACCAGAATCGAAGGTGGAAACCAAGATCGCTCTCACCTTGGCTCGGTCACTCTCCGCTGTCCGCGCCTCAGTTAAGGCCCTAGCGGAATCGGCTCGGCTGGTGGCGCTTGTTGTTGATGTCTTTGGTCCTGAGGCCTTTGATGTGGCCATTGAGTTTAATGTGCTGCCCTACCTTTTCTTCCCTACTTCGGCAATGGATTTGTGGTTTGTGTTTGAGTTGCCAAAGCTTGACGAGACTACTACTTGTGAGTACAGGGATTTGCCTGAACCGGTCCAGTATTCGGGTTGTGTGCCGTTGCATGGCAGAGACTTAGCAGACCCGGTTCAAGATAGGAGCAATGATGCTTATAAGGCGCTGCTCAGCATCAGCAAGAGGTATAAGTCGGCTGCTGGGATCATGGTGAACAGCTTTGCGGATTTGGAACCGGGTGCTTTCAAGGAGCAAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000075 GO:0000077 GO:0000228 GO:0000278 GO:0000280 GO:0000723 GO:0000724 GO:0000725 GO:0000781 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007093 GO:0007095 GO:0007127 GO:0007131 GO:0007154 GO:0007165 GO:0007346 GO:0008134 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0010389 GO:0010564 GO:0010948 GO:0010972 GO:0016043 GO:0016233 GO:0016234 GO:0022402 GO:0022414 GO:0023052 GO:0030870 GO:0031570 GO:0031572 GO:0031974 GO:0031981 GO:0032200 GO:0032392 GO:0032508 GO:0032991 GO:0033554 GO:0034641 GO:0035556 GO:0035825 GO:0042127 GO:0042405 GO:0042592 GO:0042770 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044773 GO:0044774 GO:0044818 GO:0045786 GO:0045930 GO:0046483 GO:0047485 GO:0048145 GO:0048285 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0051321 GO:0051716 GO:0051726 GO:0060249 GO:0061982 GO:0065007 GO:0065008 GO:0070013 GO:0071103 GO:0071214 GO:0071478 GO:0071479 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:0104004 GO:0140013 GO:1901360 GO:1901363 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902749 GO:1902750 GO:1903046 GO:1903047
KEGG Pathways
Metabolic & Signaling
ko03440 ko04218 map03440 map04218
Pfam Domains
Protein Families
BRCT FHA

Protein Analysis

238

Amino Acids

26.29

Weight (kDa)

5.4

Isoelectric Point (pI)

31.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 615
AccII CGCG 3 cut(s) 65, 76, 330
AciI CCGC 7 cut(s) 65, 74, 188, 321, 328, 350, 680
AclWI GGATC 2 cut(s) 46, 668
AcoI YGGCCR 2 cut(s) 114, 411
AfaI GTAC 2 cut(s) 175, 518
AfiI CCNNNNNNNGG 6 cut(s) 80, 170, 309, 454, 547, 566
AgeI ACCGGT 1 cut(s) 535
AgsI TTSAA 2 cut(s) 593, 703
AhdI GACNNNNNGTC 1 cut(s) 128
AjnI CCWGG 1 cut(s) 201
AluBI AGCT 4 cut(s) 112, 209, 493, 675
AluI AGCT 4 cut(s) 112, 209, 493, 675
Alw26I GTCTC 2 cut(s) 494, 567
AlwI GGATC 2 cut(s) 46, 668
Ama87I CYCGRG 1 cut(s) 107
AoxI GGCC 5 cut(s) 88, 114, 342, 399, 411
ApeKI GCWGC 3 cut(s) 430, 622, 653
ArsI GACNNNNNNTTYG 2 cut(s) 111, 143
AsiGI ACCGGT 1 cut(s) 535
AspLEI GCGC 3 cut(s) 332, 373, 622
AspS9I GGNCC 3 cut(s) 343, 392, 538
AsuC2I CCSGG 2 cut(s) 587, 693
AsuHPI GGTGA 4 cut(s) 142, 223, 292, 679
AvaI CYCGRG 1 cut(s) 107
AvaII GGWCC 2 cut(s) 392, 538
AxyI CCTNAGG 1 cut(s) 396
BalI TGGCCA 2 cut(s) 116, 413
BbvI GCAGC 3 cut(s) 417, 609, 640
BccI CCATC 1 cut(s) 15
BceAI ACGGC 1 cut(s) 544
BciT130I CCWGG 1 cut(s) 203
BcnI CCSGG 2 cut(s) 587, 693
BcoDI GTCTC 2 cut(s) 494, 567
BfaI CTAG 2 cut(s) 50, 347
BfoI RGCGCY 2 cut(s) 374, 623
BisI GCNGC 3 cut(s) 431, 623, 654
BlpI GCTNAGC 1 cut(s) 626
BlsI GCNGC 3 cut(s) 432, 624, 655
Bme1390I CCNGG 3 cut(s) 203, 587, 693
Bme18I GGWCC 2 cut(s) 392, 538
BmeRI GACNNNNNGTC 1 cut(s) 128
BmeT110I CYCGRG 1 cut(s) 107
BmgT120I GGNCC 3 cut(s) 343, 392, 538
BmiI GGNNCC 1 cut(s) 690
BmrFI CCNGG 3 cut(s) 203, 587, 693
BmsI GCATC 3 cut(s) 58, 598, 639
BpmI CTGGAG 1 cut(s) 228
Bpu1102I GCTNAGC 1 cut(s) 626
BpuMI CCSGG 2 cut(s) 587, 693
BsaJI CCNNGG 1 cut(s) 303
BsaWI WCCGGW 1 cut(s) 535
BsaXI ACNNNNNCTCC 1 cut(s) 698
Bsc4I CCNNNNNNNGG 6 cut(s) 80, 170, 309, 454, 547, 566
Bse118I RCCGGY 1 cut(s) 535
Bse1I ACTGG 2 cut(s) 245, 541
Bse21I CCTNAGG 1 cut(s) 396
Bse3DI GCAATG 2 cut(s) 465, 610
BseBI CCWGG 1 cut(s) 203
BseDI CCNNGG 1 cut(s) 303
BseGI GGATG 2 cut(s) 73, 159
BseLI CCNNNNNNNGG 6 cut(s) 80, 170, 309, 454, 547, 566
BseMI GCAATG 2 cut(s) 465, 610
BseMII CTCAG 3 cut(s) 348, 387, 640
BseNI ACTGG 2 cut(s) 245, 541
BseXI GCAGC 3 cut(s) 417, 609, 640
BseYI CCCAGC 1 cut(s) 656
Bsh1236I CGCG 3 cut(s) 65, 76, 330
BshFI GGCC 5 cut(s) 90, 116, 344, 401, 413
BshTI ACCGGT 1 cut(s) 535
BsiHKCI CYCGRG 1 cut(s) 107
BsiSI CCGG 4 cut(s) 215, 536, 587, 692
BslI CCNNNNNNNGG 6 cut(s) 80, 170, 309, 454, 547, 566
BsmAI GTCTC 2 cut(s) 494, 567
BsnI GGCC 5 cut(s) 90, 116, 344, 401, 413
BsoBI CYCGRG 1 cut(s) 107
Bsp143I GATC 3 cut(s) 38, 291, 660
Bsp1720I GCTNAGC 1 cut(s) 626
BspACI CCGC 7 cut(s) 65, 74, 188, 321, 328, 350, 680
BspANI GGCC 5 cut(s) 90, 116, 344, 401, 413
BspCNI CTCAG 3 cut(s) 347, 388, 639
BspFNI CGCG 3 cut(s) 65, 76, 330
BspLI GGNNCC 1 cut(s) 690
BspPI GGATC 2 cut(s) 46, 668
BsrDI GCAATG 2 cut(s) 465, 610
BsrFI RCCGGY 1 cut(s) 535
BsrI ACTGG 2 cut(s) 245, 541
BssAI RCCGGY 1 cut(s) 535
BssECI CCNNGG 1 cut(s) 303
BssMI GATC 3 cut(s) 38, 291, 660
BssT1I CCWWGG 1 cut(s) 303
Bst2UI CCWGG 1 cut(s) 203
Bst4CI ACNGT 2 cut(s) 148, 173
BstC8I GCNNGC 1 cut(s) 114
BstDEI CTNAG 4 cut(s) 334, 396, 577, 626
BstF5I GGATG 2 cut(s) 73, 159
BstFNI CGCG 3 cut(s) 65, 76, 330
BstH2I RGCGCY 2 cut(s) 374, 623
BstHHI GCGC 3 cut(s) 332, 373, 622
BstKTI GATC 3 cut(s) 41, 294, 663
BstMAI GTCTC 2 cut(s) 494, 567
BstMBI GATC 3 cut(s) 38, 291, 660
BstMWI GCNNNNNNNGC 4 cut(s) 329, 356, 370, 617
BstNI CCWGG 1 cut(s) 203
BstSCI CCNGG 3 cut(s) 201, 585, 691
BstUI CGCG 3 cut(s) 65, 76, 330
BstV1I GCAGC 3 cut(s) 417, 609, 640
Bsu36I CCTNAGG 1 cut(s) 396
BsuRI GGCC 5 cut(s) 90, 116, 344, 401, 413
BtsCI GGATG 2 cut(s) 73, 159
Cac8I GCNNGC 1 cut(s) 114
CfoI GCGC 3 cut(s) 332, 373, 622
Cfr10I RCCGGY 1 cut(s) 535
Cfr13I GGNCC 3 cut(s) 343, 392, 538
Csp6I GTAC 2 cut(s) 174, 517
CspAI ACCGGT 1 cut(s) 535
CviAII CATG 2 cut(s) 566, 664
CviQI GTAC 2 cut(s) 174, 517
DdeI CTNAG 4 cut(s) 334, 396, 577, 626
DpnI GATC 3 cut(s) 40, 293, 662
DpnII GATC 3 cut(s) 38, 291, 660
DriI GACNNNNNGTC 1 cut(s) 128
EaeI YGGCCR 2 cut(s) 114, 411
Eam1105I GACNNNNNGTC 1 cut(s) 128
Eco130I CCWWGG 1 cut(s) 303
Eco147I AGGCCT 1 cut(s) 401
Eco47I GGWCC 2 cut(s) 392, 538
Eco81I CCTNAGG 1 cut(s) 396
Eco88I CYCGRG 1 cut(s) 107
EcoO109I RGGNCCY 1 cut(s) 343
EcoRII CCWGG 1 cut(s) 201
EcoT14I CCWWGG 1 cut(s) 303
ErhI CCWWGG 1 cut(s) 303
FaeI CATG 2 cut(s) 569, 667
FaiI YATR 5 cut(s) 224, 567, 615, 645, 665
FatI CATG 2 cut(s) 565, 663
Fnu4HI GCNGC 3 cut(s) 431, 623, 654
FokI GGATG 2 cut(s) 80, 146
Fsp4HI GCNGC 3 cut(s) 431, 623, 654
FspBI CTAG 2 cut(s) 50, 347
GlaI GCGC 3 cut(s) 331, 372, 621
GluI GCNGC 3 cut(s) 431, 623, 654
GsaI CCCAGC 1 cut(s) 660
GsuI CTGGAG 1 cut(s) 228
HaeII RGCGCY 2 cut(s) 374, 623
HaeIII GGCC 5 cut(s) 90, 116, 344, 401, 413
HapII CCGG 4 cut(s) 215, 536, 587, 692
HhaI GCGC 3 cut(s) 332, 373, 622
Hin1II CATG 2 cut(s) 569, 667
Hin6I GCGC 3 cut(s) 330, 371, 620
HinP1I GCGC 3 cut(s) 330, 371, 620
HincII GTYRAC 1 cut(s) 250
HindII GTYRAC 1 cut(s) 250
HindIII AAGCTT 2 cut(s) 207, 491
HinfI GANTC 3 cut(s) 123, 272, 353
HpaII CCGG 4 cut(s) 215, 536, 587, 692
HphI GGTGA 4 cut(s) 142, 223, 292, 679
Hpy166II GTNNAC 4 cut(s) 8, 133, 250, 670
Hpy188III TCNNGA 2 cut(s) 395, 593
Hpy8I GTNNAC 4 cut(s) 8, 133, 250, 670
Hpy99I CGWCG 3 cut(s) 131, 173, 260
HpyAV CCTTC 4 cut(s) 163, 238, 244, 271
HpyCH4III ACNGT 2 cut(s) 148, 173
HpyCH4V TGCA 2 cut(s) 71, 565
HpyF10VI GCNNNNNNNGC 4 cut(s) 329, 356, 370, 617
HpyF3I CTNAG 4 cut(s) 334, 396, 577, 626
Hsp92II CATG 2 cut(s) 569, 667
HspAI GCGC 3 cut(s) 330, 371, 620
Kzo9I GATC 3 cut(s) 38, 291, 660
LmnI GCTCC 2 cut(s) 600, 706
Lsp1109I GCAGC 3 cut(s) 417, 609, 640
LweI GCATC 3 cut(s) 58, 598, 639
MaeI CTAG 2 cut(s) 50, 347
MaeIII GTNAC 2 cut(s) 148, 312
MalI GATC 3 cut(s) 40, 293, 662
MboI GATC 3 cut(s) 38, 291, 660
MboII GAAGA 1 cut(s) 436
MlsI TGGCCA 2 cut(s) 116, 413
MluNI TGGCCA 2 cut(s) 116, 413
MlyI GAGTC 1 cut(s) 117
MnlI CCTC 8 cut(s) 18, 167, 248, 252, 272, 343, 391, 633
Mox20I TGGCCA 2 cut(s) 116, 413
MscI TGGCCA 2 cut(s) 116, 413
MseI TTAA 2 cut(s) 339, 423
Msp20I TGGCCA 2 cut(s) 116, 413
MspA1I CMGCKG 1 cut(s) 323
MspI CCGG 4 cut(s) 215, 536, 587, 692
MspR9I CCNGG 3 cut(s) 203, 587, 693
MvaI CCWGG 1 cut(s) 203
MvnI CGCG 3 cut(s) 65, 76, 330
MwoI GCNNNNNNNGC 4 cut(s) 329, 356, 370, 617
NciI CCSGG 2 cut(s) 587, 693
NdeII GATC 3 cut(s) 38, 291, 660
NlaIII CATG 2 cut(s) 569, 667
NlaIV GGNNCC 1 cut(s) 690
NmeAIII GCCGAG 1 cut(s) 340
NmuCI GTSAC 2 cut(s) 148, 312
PaeR7I CTCGAG 1 cut(s) 107
PceI AGGCCT 1 cut(s) 401
PfeI GAWTC 2 cut(s) 272, 353
PfoI TCCNGGA 1 cut(s) 201
PinAI ACCGGT 1 cut(s) 535
PkrI GCNGC 3 cut(s) 432, 624, 655
PleI GAGTC 1 cut(s) 117
PpsI GAGTC 1 cut(s) 117
PsiI TTATAA 1 cut(s) 615
Psp6I CCWGG 1 cut(s) 201
PspFI CCCAGC 1 cut(s) 656
PspGI CCWGG 1 cut(s) 201
PspN4I GGNNCC 1 cut(s) 690
PspPI GGNCC 3 cut(s) 343, 392, 538
PspXI VCTCGAGB 1 cut(s) 107
RsaI GTAC 2 cut(s) 175, 518
RsaNI GTAC 2 cut(s) 174, 517
SaqAI TTAA 2 cut(s) 339, 423
SatI GCNGC 3 cut(s) 431, 623, 654
Sau3AI GATC 3 cut(s) 38, 291, 660
Sau96I GGNCC 3 cut(s) 343, 392, 538
SchI GAGTC 1 cut(s) 117
ScrFI CCNGG 3 cut(s) 203, 587, 693
SfaNI GCATC 3 cut(s) 58, 598, 639
Sfr274I CTCGAG 1 cut(s) 107
SinI GGWCC 2 cut(s) 392, 538
SlaI CTCGAG 1 cut(s) 107
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
SseBI AGGCCT 1 cut(s) 401
SsiI CCGC 7 cut(s) 65, 74, 188, 321, 328, 350, 680
SspMI CTAG 2 cut(s) 50, 347
StuI AGGCCT 1 cut(s) 401
StyD4I CCNGG 3 cut(s) 201, 585, 691
StyI CCWWGG 1 cut(s) 303
TaaI ACNGT 2 cut(s) 148, 173
TaqI TCGA 3 cut(s) 108, 255, 275
TaqII GACCGA 1 cut(s) 300
TatI WGTACW 1 cut(s) 516
TfiI GAWTC 2 cut(s) 272, 353
Tru1I TTAA 2 cut(s) 339, 423
Tru9I TTAA 2 cut(s) 339, 423
TseFI GTSAC 2 cut(s) 148, 312
TseI GCWGC 3 cut(s) 430, 622, 653
Tsp45I GTSAC 2 cut(s) 148, 312
VpaK11BI GGWCC 2 cut(s) 392, 538
XhoI CTCGAG 1 cut(s) 107
XspI CTAG 2 cut(s) 50, 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.