Rorug07G0350200

Forkhead associated domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0004815
Physical Location & Seq
Reverse (-)
38825858 .. 38827183
1326 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0350200.1

Sequence Viewer

Length: 1143 bp
ATGGAGGTGGTGCAAGTACTTCATATGAAGAACGGAGATGGCGAGACTAGTTATGCCAGAAACTCCACTGTTCAGAAAAAAACAATATCTTTCGCCAAGCCAATCATTGAGAAAGCAGTGCTAGAAATCTTGGGCTCCACTATCATGGGAATAGAGAGCATGGGAATAGCAGATTTGGGTTGCTCCTCTGGACCCAACACCTTCCTACTCGTCTCGCATATCATGGATGTAATACATGCTAAATTTAGCACAGTTACAGAGCTTAGAGTGTTTCTAAATGACCTCTTTAGCAACGACTTCAACTCCATCTTTATGTCACTCCCAGCCTTCTACGATAAACTGAATAAGCAAGACTATAATAATGGTCGTGATCCTGAGCAGCATGTCATAAATCCCTTAATTTCTGCTGTGCCCGGTTCGTTTTACGGTCCATTGTTTCCCAGAAAGAGTATGCACTTTGTTCACTCTTCTTTTAGTCTTCACTGGCTATCTCAGGTCCCCGATGGCCTAAACAACAAAGGAAAGATTTACATGTCTAAGAGCAGCCCACAGTGTGTGTTGGATGCATACTCCATGCAGTTTCAGAAAGGCTTTGCTGTTTTTCTGAGGTCTAGGGCACAAGAAATAGTCGACGGAGGACGAATGGTGTTGTCCTTCATGGGCAGGCCATCCTCTGACCCAACAGCTGATCAGGGAATTTTCTACCAGTACGAGCTCTTAGCCCAAGCATTAATGGCCATGGTTTCCAAGGGTCTTATAAAAGAGGAGAAGGTTGATTCCTTCAACTTGCCCCACTATGCTCCATGTGCAGAGGAATTGAATTTGGTGTTACAAAAAGAAGGGTCTTTCATCAAGGAACACCTTGAAGCATTCGAAGTTGATTGGGATATTGGCGGTGCTGATCTCGATCATAACATGCCTAATGGTACATTTGACGATGATCAAACAATAACAAGCAATGGGCAGCAAATGGCCAATAGCATAAGAGCCGTAGTTGAGTCAATGCTTGAATCTCATTTTGGAAAAGAGATAATGGATGATGTGTTTCAGAAATATGCAGAGCTCGTTAGCAGGCACTTAACAAATAGTACCACTACACCCAAGTATACGGTTTGGGTCATTTCACTCGTTAAAAAGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000075 GO:0000077 GO:0000228 GO:0000278 GO:0000280 GO:0000723 GO:0000724 GO:0000725 GO:0000781 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007093 GO:0007095 GO:0007127 GO:0007131 GO:0007154 GO:0007165 GO:0007346 GO:0008134 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0010389 GO:0010564 GO:0010948 GO:0010972 GO:0016043 GO:0016233 GO:0016234 GO:0022402 GO:0022414 GO:0023052 GO:0030870 GO:0031570 GO:0031572 GO:0031974 GO:0031981 GO:0032200 GO:0032392 GO:0032508 GO:0032991 GO:0033554 GO:0034641 GO:0035556 GO:0035825 GO:0042127 GO:0042405 GO:0042592 GO:0042770 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044773 GO:0044774 GO:0044818 GO:0045786 GO:0045930 GO:0046483 GO:0047485 GO:0048145 GO:0048285 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0051321 GO:0051716 GO:0051726 GO:0060249 GO:0061982 GO:0065007 GO:0065008 GO:0070013 GO:0071103 GO:0071214 GO:0071478 GO:0071479 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:0104004 GO:0140013 GO:1901360 GO:1901363 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902749 GO:1902750 GO:1903046 GO:1903047
KEGG Pathways
Metabolic & Signaling
ko03440 ko04218 map03440 map04218
Pfam Domains
Protein Families
BRCT FHA

Protein Analysis

380

Amino Acids

42.51

Weight (kDa)

5.55

Isoelectric Point (pI)

41.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 51 - 378 4.3e-114 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 758
AccI GTMKAC 2 cut(s) 630, 1106
AciI CCGC 1 cut(s) 894
AclWI GGATC 1 cut(s) 365
AcoI YGGCCR 2 cut(s) 735, 972
AcsI RAATTY 3 cut(s) 242, 696, 820
AdeI CACNNNGTG 1 cut(s) 554
AfaI GTAC 4 cut(s) 18, 710, 928, 1090
AflIII ACRYGT 1 cut(s) 531
AgsI TTSAA 5 cut(s) 301, 784, 820, 866, 1010
AhlI ACTAGT 1 cut(s) 47
AjuI GAANNNNNNNTTGG 2 cut(s) 1002, 1034
AluBI AGCT 4 cut(s) 262, 686, 715, 1063
AluI AGCT 4 cut(s) 262, 686, 715, 1063
Alw21I GWGCWC 2 cut(s) 717, 1065
Alw26I GTCTC 2 cut(s) 38, 217
AlwI GGATC 1 cut(s) 365
AoxI GGCC 4 cut(s) 505, 665, 735, 972
ApeKI GCWGC 3 cut(s) 379, 543, 964
ApoI RAATTY 3 cut(s) 242, 696, 820
AseI ATTAAT 1 cut(s) 731
AspS9I GGNCC 3 cut(s) 191, 428, 496
AsuC2I CCSGG 1 cut(s) 414
AsuII TTCGAA 1 cut(s) 873
AvaII GGWCC 3 cut(s) 191, 428, 496
BaeGI GKGCMC 2 cut(s) 414, 619
BalI TGGCCA 2 cut(s) 737, 974
BanII GRGCYC 3 cut(s) 137, 717, 1065
BbsI GAAGAC 1 cut(s) 470
Bbv12I GWGCWC 2 cut(s) 717, 1065
BbvI GCAGC 3 cut(s) 391, 555, 976
BccI CCATC 4 cut(s) 32, 314, 497, 676
BceAI ACGGC 1 cut(s) 974
BclI TGATCA 2 cut(s) 688, 940
BcnI CCSGG 1 cut(s) 414
BcoDI GTCTC 2 cut(s) 38, 217
BcuI ACTAGT 1 cut(s) 47
BfaI CTAG 3 cut(s) 48, 122, 612
BisI GCNGC 3 cut(s) 380, 544, 965
BlsI GCNGC 3 cut(s) 381, 545, 966
BmcAI AGTACT 1 cut(s) 18
Bme1390I CCNGG 1 cut(s) 414
Bme18I GGWCC 3 cut(s) 191, 428, 496
BmgT120I GGNCC 3 cut(s) 191, 428, 496
BmiI GGNNCC 3 cut(s) 136, 193, 498
BmrFI CCNGG 1 cut(s) 414
BmsI GCATC 1 cut(s) 553
BpiI GAAGAC 1 cut(s) 470
Bpu10I CCTNAGC 1 cut(s) 375
Bpu14I TTCGAA 1 cut(s) 873
BpuMI CCSGG 1 cut(s) 414
BsaBI GATNNNNATC 1 cut(s) 906
BsaJI CCNNGG 2 cut(s) 738, 747
BsaXI ACNNNNNCTCC 2 cut(s) 287, 317
Bse1I ACTGG 2 cut(s) 488, 706
Bse3DI GCAATG 1 cut(s) 964
Bse8I GATNNNNATC 1 cut(s) 906
BseDI CCNNGG 2 cut(s) 738, 747
BseGI GGATG 4 cut(s) 232, 568, 668, 1042
BseJI GATNNNNATC 1 cut(s) 906
BseMI GCAATG 1 cut(s) 964
BseMII CTCAG 3 cut(s) 366, 506, 596
BseNI ACTGG 2 cut(s) 488, 706
BseRI GAGGAG 2 cut(s) 175, 779
BseSI GKGCMC 2 cut(s) 414, 619
BseXI GCAGC 3 cut(s) 391, 555, 976
BseYI CCCAGC 1 cut(s) 322
BsgI GTGCAG 1 cut(s) 828
BshFI GGCC 4 cut(s) 507, 667, 737, 974
BsiHKAI GWGCWC 2 cut(s) 717, 1065
BsiSI CCGG 1 cut(s) 414
BslFI GGGAC 1 cut(s) 482
BsmAI GTCTC 2 cut(s) 38, 217
BsmBI CGTCTC 1 cut(s) 217
BsmFI GGGAC 1 cut(s) 482
BsmI GAATGC 1 cut(s) 869
BsnI GGCC 4 cut(s) 507, 667, 737, 974
Bsp119I TTCGAA 1 cut(s) 873
Bsp1286I GDGCHC 5 cut(s) 137, 414, 619, 717, 1065
Bsp143I GATC 5 cut(s) 370, 688, 901, 907, 940
Bsp19I CCATGG 1 cut(s) 738
BspACI CCGC 1 cut(s) 894
BspANI GGCC 4 cut(s) 507, 667, 737, 974
BspCNI CTCAG 3 cut(s) 367, 505, 597
BspLI GGNNCC 3 cut(s) 136, 193, 498
BspPI GGATC 1 cut(s) 365
BspT104I TTCGAA 1 cut(s) 873
BsrDI GCAATG 1 cut(s) 964
BsrI ACTGG 2 cut(s) 488, 706
BssECI CCNNGG 2 cut(s) 738, 747
BssMI GATC 5 cut(s) 370, 688, 901, 907, 940
BssNAI GTATAC 1 cut(s) 1107
BssT1I CCWWGG 2 cut(s) 738, 747
Bst1107I GTATAC 1 cut(s) 1107
Bst4CI ACNGT 5 cut(s) 70, 253, 428, 552, 1111
Bst6I CTCTTC 1 cut(s) 472
BstBI TTCGAA 1 cut(s) 873
BstC8I GCNNGC 2 cut(s) 665, 1073
BstDEI CTNAG 6 cut(s) 263, 375, 492, 537, 605, 718
BstDSI CCRYGG 1 cut(s) 738
BstF5I GGATG 4 cut(s) 232, 568, 668, 1042
BstKTI GATC 5 cut(s) 373, 691, 904, 910, 943
BstMAI GTCTC 2 cut(s) 38, 217
BstMBI GATC 5 cut(s) 370, 688, 901, 907, 940
BstMWI GCNNNNNNNGC 2 cut(s) 734, 806
BstNSI RCATGY 4 cut(s) 239, 386, 535, 919
BstSCI CCNGG 1 cut(s) 412
BstSLI GKGCMC 2 cut(s) 414, 619
BstV1I GCAGC 3 cut(s) 391, 555, 976
BstV2I GAAGAC 1 cut(s) 470
BstXI CCANNNNNNTGG 1 cut(s) 145
BstZ17I GTATAC 1 cut(s) 1107
BsuRI GGCC 4 cut(s) 507, 667, 737, 974
BtgI CCRYGG 1 cut(s) 738
BtsCI GGATG 4 cut(s) 232, 568, 668, 1042
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 4 cut(s) 66, 123, 481, 557
Cac8I GCNNGC 2 cut(s) 665, 1073
Cfr13I GGNCC 3 cut(s) 191, 428, 496
Csp6I GTAC 4 cut(s) 17, 709, 927, 1089
CviQI GTAC 4 cut(s) 17, 709, 927, 1089
DdeI CTNAG 6 cut(s) 263, 375, 492, 537, 605, 718
DpnI GATC 5 cut(s) 372, 690, 903, 909, 942
DpnII GATC 5 cut(s) 370, 688, 901, 907, 940
DraIII CACNNNGTG 1 cut(s) 554
EaeI YGGCCR 2 cut(s) 735, 972
Eam1104I CTCTTC 1 cut(s) 472
EarI CTCTTC 1 cut(s) 472
Ecl136II GAGCTC 2 cut(s) 715, 1063
Eco130I CCWWGG 2 cut(s) 738, 747
Eco24I GRGCYC 3 cut(s) 137, 717, 1065
Eco47I GGWCC 3 cut(s) 191, 428, 496
Eco53kI GAGCTC 2 cut(s) 715, 1063
EcoICRI GAGCTC 2 cut(s) 715, 1063
EcoO109I RGGNCCY 1 cut(s) 496
EcoT14I CCWWGG 2 cut(s) 738, 747
EcoT22I ATGCAT 1 cut(s) 568
EcoT38I GRGCYC 3 cut(s) 137, 717, 1065
ErhI CCWWGG 2 cut(s) 738, 747
Esp3I CGTCTC 1 cut(s) 217
FaqI GGGAC 1 cut(s) 482
FauNDI CATATG 1 cut(s) 24
FbaI TGATCA 2 cut(s) 688, 940
FblI GTMKAC 2 cut(s) 630, 1106
Fnu4HI GCNGC 3 cut(s) 380, 544, 965
FokI GGATG 4 cut(s) 239, 575, 655, 1049
FriOI GRGCYC 3 cut(s) 137, 717, 1065
Fsp4HI GCNGC 3 cut(s) 380, 544, 965
FspBI CTAG 3 cut(s) 48, 122, 612
GluI GCNGC 3 cut(s) 380, 544, 965
GsaI CCCAGC 1 cut(s) 326
HaeIII GGCC 4 cut(s) 507, 667, 737, 974
HapII CCGG 1 cut(s) 414
HincII GTYRAC 1 cut(s) 631
HindII GTYRAC 1 cut(s) 631
HinfI GANTC 3 cut(s) 776, 998, 1010
HpaII CCGG 1 cut(s) 414
Hpy166II GTNNAC 3 cut(s) 463, 631, 1107
Hpy188I TCNGA 5 cut(s) 75, 585, 606, 676, 1050
Hpy188III TCNNGA 4 cut(s) 189, 368, 374, 905
Hpy8I GTNNAC 3 cut(s) 463, 631, 1107
Hpy99I CGWCG 1 cut(s) 635
HpyAV CCTTC 6 cut(s) 211, 337, 664, 763, 790, 833
HpyCH4III ACNGT 5 cut(s) 70, 253, 428, 552, 1111
HpyCH4V TGCA 6 cut(s) 13, 454, 566, 577, 809, 1058
HpyF10VI GCNNNNNNNGC 2 cut(s) 734, 806
HpyF3I CTNAG 6 cut(s) 263, 375, 492, 537, 605, 718
Ksp22I TGATCA 2 cut(s) 688, 940
Kzo9I GATC 5 cut(s) 370, 688, 901, 907, 940
LmnI GCTCC 3 cut(s) 140, 188, 805
Lsp1109I GCAGC 3 cut(s) 391, 555, 976
LweI GCATC 1 cut(s) 553
MaeI CTAG 3 cut(s) 48, 122, 612
MaeIII GTNAC 3 cut(s) 253, 315, 828
MalI GATC 5 cut(s) 372, 690, 903, 909, 942
MboI GATC 5 cut(s) 370, 688, 901, 907, 940
MboII GAAGA 3 cut(s) 40, 459, 470
MhlI GDGCHC 5 cut(s) 137, 414, 619, 717, 1065
MlsI TGGCCA 2 cut(s) 737, 974
MluCI AATT 5 cut(s) 242, 399, 696, 815, 820
MluNI TGGCCA 2 cut(s) 737, 974
MlyI GAGTC 1 cut(s) 1007
MmeI TCCRAC 1 cut(s) 540
MnlI CCTC 7 cut(s) 196, 293, 600, 629, 682, 757, 805
Mox20I TGGCCA 2 cut(s) 737, 974
Mph1103I ATGCAT 1 cut(s) 568
MscI TGGCCA 2 cut(s) 737, 974
MseI TTAA 4 cut(s) 398, 731, 1079, 1131
MslI CAYNNNNRTG 2 cut(s) 143, 311
Msp20I TGGCCA 2 cut(s) 737, 974
MspA1I CMGCKG 1 cut(s) 686
MspI CCGG 1 cut(s) 414
MspR9I CCNGG 1 cut(s) 414
Mva1269I GAATGC 1 cut(s) 869
MwoI GCNNNNNNNGC 2 cut(s) 734, 806
NciI CCSGG 1 cut(s) 414
NcoI CCATGG 1 cut(s) 738
NdeI CATATG 1 cut(s) 24
NdeII GATC 5 cut(s) 370, 688, 901, 907, 940
NlaIV GGNNCC 3 cut(s) 136, 193, 498
NmuCI GTSAC 1 cut(s) 315
NsiI ATGCAT 1 cut(s) 568
NspI RCATGY 4 cut(s) 239, 386, 535, 919
NspV TTCGAA 1 cut(s) 873
PciI ACATGT 1 cut(s) 531
PcsI WCGNNNNNNNCGW 1 cut(s) 39
PctI GAATGC 1 cut(s) 869
PfeI GAWTC 2 cut(s) 776, 1010
PkrI GCNGC 3 cut(s) 381, 545, 966
PleI GAGTC 1 cut(s) 1006
PpsI GAGTC 1 cut(s) 1006
PpuMI RGGWCCY 1 cut(s) 496
PscI ACATGT 1 cut(s) 531
PshBI ATTAAT 1 cut(s) 731
PsiI TTATAA 1 cut(s) 758
Psp124BI GAGCTC 2 cut(s) 717, 1065
Psp5II RGGWCCY 1 cut(s) 496
PspFI CCCAGC 1 cut(s) 322
PspN4I GGNNCC 3 cut(s) 136, 193, 498
PspPI GGNCC 3 cut(s) 191, 428, 496
PspPPI RGGWCCY 1 cut(s) 496
PvuII CAGCTG 1 cut(s) 686
RsaI GTAC 4 cut(s) 18, 710, 928, 1090
RsaNI GTAC 4 cut(s) 17, 709, 927, 1089
RseI CAYNNNNRTG 2 cut(s) 143, 311
SacI GAGCTC 2 cut(s) 717, 1065
SalI GTCGAC 1 cut(s) 629
SaqAI TTAA 4 cut(s) 398, 731, 1079, 1131
SatI GCNGC 3 cut(s) 380, 544, 965
Sau3AI GATC 5 cut(s) 370, 688, 901, 907, 940
Sau96I GGNCC 3 cut(s) 191, 428, 496
ScaI AGTACT 1 cut(s) 18
SchI GAGTC 1 cut(s) 1007
ScrFI CCNGG 1 cut(s) 414
SduI GDGCHC 5 cut(s) 137, 414, 619, 717, 1065
SfaNI GCATC 1 cut(s) 553
SfuI TTCGAA 1 cut(s) 873
SinI GGWCC 3 cut(s) 191, 428, 496
SmiMI CAYNNNNRTG 2 cut(s) 143, 311
SpeI ACTAGT 1 cut(s) 47
Sse9I AATT 5 cut(s) 242, 399, 696, 815, 820
SsiI CCGC 1 cut(s) 894
SspMI CTAG 3 cut(s) 48, 122, 612
SstI GAGCTC 2 cut(s) 717, 1065
StyD4I CCNGG 1 cut(s) 412
StyI CCWWGG 2 cut(s) 738, 747
TaaI ACNGT 5 cut(s) 70, 253, 428, 552, 1111
TaqI TCGA 3 cut(s) 630, 873, 906
TasI AATT 5 cut(s) 242, 399, 696, 815, 820
TatI WGTACW 1 cut(s) 16
TfiI GAWTC 2 cut(s) 776, 1010
Tru1I TTAA 4 cut(s) 398, 731, 1079, 1131
Tru9I TTAA 4 cut(s) 398, 731, 1079, 1131
TscAI CASTG 4 cut(s) 73, 123, 488, 557
TseFI GTSAC 1 cut(s) 315
TseI GCWGC 3 cut(s) 379, 543, 964
Tsp45I GTSAC 1 cut(s) 315
TspDTI ATGAA 4 cut(s) 11, 41, 646, 838
TspGWI ACGGA 2 cut(s) 48, 648
TspRI CASTG 4 cut(s) 73, 123, 488, 557
VpaK11BI GGWCC 3 cut(s) 191, 428, 496
VspI ATTAAT 1 cut(s) 731
XapI RAATTY 3 cut(s) 242, 696, 820
XceI RCATGY 4 cut(s) 239, 386, 535, 919
XmiI GTMKAC 2 cut(s) 630, 1106
XspI CTAG 3 cut(s) 48, 122, 612
ZrmI AGTACT 1 cut(s) 18
Zsp2I ATGCAT 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.