Rroxscaffold_3G00218250

Forkhead associated domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0004815
Physical Location & Seq
Forward (+)
381177 .. 397664
16488 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00218250.1

Sequence Viewer

Length: 1602 bp
ATGGTTTGGGGTTTCTTCCCCGCCGACCCCCTCTCAGGTGAGGATACATACTATATCTTTGCTACAGGAACTTACAAAGTGGGTCGGAAAGGTTGTGATGTAAATATTGCAAAAGACAAAGGAGTTTCTAGGGTCCACGCAGAAATAATTGTTGATTCAATGATATCAGCTCTCCCTCAGCAAACTAAATCTTCTGTTTTATCCTCCAAAGTCCGAATTAGAGATTGCTCAAAATATGGAACGTATATTAACAAGAACCTTACATCAGTGGAGAAGATTCATGAGTTACCGAATAAAGAAACGTCATTGAGAGATGGGGACATGGTTTCATTTGGAACTGGTACTGCTGTCTTCAGATTTTCCTTTGTTCCCCTTATTTTGTTCGCATGCTGCCCGGAAAAATCTCGAGTGAATCATCCTCTTCAAGAGAAAATTTCATCAATCGGTGCTCGCATCACCTATCATTGGAGTCAGGAGTGCACGCATGTGCTTGTTGACCAAGTCATGCCAATGAAAGAAGATCTACTGGATGGTATTATGATGAAGAAACCTTTTGTAGTTGGAAGTTGGGTTGAGTTTGTTGCAGAGAAGAACATTCTCACTGAGTTTCCAAGTTACACAGCCTTTTCTCCAACAATGACCATGGAAGGAATATCGGTCAAACTTGCGGACCCAAGAAGTCGAGAAAACTGTTTAAAAGGATATACATTTTTGTTGGACTCAACACTAGTGTATAAATTCGGTGATCGGTTGCAGTCCTTACTGGAAGTCAGTGGTGCAGAGATTCTTTTAATTGAAGGATTTAAATCAAAAAGCCAACAAGTGAATGTGTCCTCAAAGCAAGTGCTGTTGGTGAATTTGGAAAGAGATTATAATGAAGTAGGATTAAATATCAATGCGTCTCTGTTCCTCACAAACAAAATTCATATCATATTGTCCCTCCTTTATCCAACTCTAGAACTAGGATTTATTTGCAGCAGTCTCGATTGTAGAAAGGAAAGGGATTTCGACAATCAAACATCAGTTCTGAGCAATGCCGTTTCCGTAGGGTGCACATTTGTGGCAGTCTCAGATTATGAAACTGTGGTAGCTGATTCTGATGTAGAAGAAACAGCCACATCAGTTCTGGCAACTGCATCTGTTGGCACTGGAGTTGTTGAAAATGTGCTCCATGCAGTCACCAAATCGGAGAATAACTTTGTCATGAGCTCTAGACGCAGTAGTGACATATCCACCATAAGAGGCAAGCTTAATGATTCTGAAAGTGGGATTGCTGATATTATTTATAGCCAAGATTTGATTGCGCGAGATAAGAGCATACCTTGTACCGTTGTTACTAGTGCAAACAACAGATTCATAAATTTCAAACGCTTCAGAAAGACAAATATTCAGTCTGGGAATAGCTTCAACAATCTTATTCCATTCTCCAAGGACCCATATAATGATTCTGACTATGGGAGTGAGGAAGTGGTACAGTCTGTGAAGGACGAGAAAAGGAGAAAGCACATGGAAGCCATCTCTGAAGAATTATTTAATAATGAACAGGGTCGATGTCGTGGTGTAGCTGGTTCTCTTCATGGGATTCTTAGTCATGGAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000075 GO:0000077 GO:0000228 GO:0000278 GO:0000280 GO:0000723 GO:0000724 GO:0000725 GO:0000781 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007093 GO:0007095 GO:0007127 GO:0007131 GO:0007154 GO:0007165 GO:0007346 GO:0008134 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0010389 GO:0010564 GO:0010948 GO:0010972 GO:0016043 GO:0016233 GO:0016234 GO:0022402 GO:0022414 GO:0023052 GO:0030870 GO:0031570 GO:0031572 GO:0031974 GO:0031981 GO:0032200 GO:0032392 GO:0032508 GO:0032991 GO:0033554 GO:0034641 GO:0035556 GO:0035825 GO:0042127 GO:0042405 GO:0042592 GO:0042770 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044773 GO:0044774 GO:0044818 GO:0045786 GO:0045930 GO:0046483 GO:0047485 GO:0048145 GO:0048285 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0051321 GO:0051716 GO:0051726 GO:0060249 GO:0061982 GO:0065007 GO:0065008 GO:0070013 GO:0071103 GO:0071214 GO:0071478 GO:0071479 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:0104004 GO:0140013 GO:1901360 GO:1901363 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902749 GO:1902750 GO:1903046 GO:1903047
KEGG Pathways
Metabolic & Signaling
ko03440 ko04218 map03440 map04218
Pfam Domains
Protein Families
BRCT FHA

Protein Analysis

533

Amino Acids

59.21

Weight (kDa)

6.12

Isoelectric Point (pI)

41.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FHA PF00498 25 - 112 4.1e-10 FHA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 873
AccII CGCG 1 cut(s) 1306
AciI CCGC 2 cut(s) 21, 668
AcsI RAATTY 5 cut(s) 432, 737, 856, 921, 1360
AcuI CTGAAG 3 cut(s) 337, 1357, 1542
AfaI GTAC 3 cut(s) 343, 1327, 1473
AfiI CCNNNNNNNGG 2 cut(s) 35, 465
AgsI TTSAA 6 cut(s) 159, 425, 797, 1160, 1366, 1408
AhlI ACTAGT 2 cut(s) 727, 1337
AleI CACNNNNGTG 2 cut(s) 485, 1058
AluBI AGCT 6 cut(s) 170, 1091, 1209, 1249, 1404, 1565
AluI AGCT 6 cut(s) 170, 1091, 1209, 1249, 1404, 1565
Alw21I GWGCWC 5 cut(s) 451, 482, 1055, 1170, 1211
Alw26I GTCTC 3 cut(s) 906, 986, 1072
Alw44I GTGCAC 2 cut(s) 478, 1051
Ama87I CYCGRG 1 cut(s) 405
ApaLI GTGCAC 2 cut(s) 478, 1051
ApeKI GCWGC 2 cut(s) 390, 975
ApoI RAATTY 5 cut(s) 432, 737, 856, 921, 1360
ArsI GACNNNNNNTTYG 2 cut(s) 1376, 1408
Asp700I GAANNNNTTC 1 cut(s) 1403
AspLEI GCGC 1 cut(s) 1306
AspS9I GGNCC 3 cut(s) 133, 670, 1432
AsuC2I CCSGG 1 cut(s) 395
AsuHPI GGTGA 5 cut(s) 50, 448, 755, 865, 1171
AvaI CYCGRG 1 cut(s) 405
AvaII GGWCC 3 cut(s) 133, 670, 1432
BaeGI GKGCMC 2 cut(s) 482, 1055
BaeI ACNNNNGTAYC 2 cut(s) 333, 366
BanII GRGCYC 1 cut(s) 1211
BbsI GAAGAC 1 cut(s) 343
Bbv12I GWGCWC 5 cut(s) 451, 482, 1055, 1170, 1211
BbvCI CCTCAGC 1 cut(s) 177
BbvI GCAGC 2 cut(s) 377, 987
BccI CCATC 3 cut(s) 308, 524, 1523
BceAI ACGGC 1 cut(s) 1022
BcgI CGANNNNNNTGC 2 cut(s) 964, 998
BciVI GTATCC 1 cut(s) 37
BcnI CCSGG 1 cut(s) 395
BcoDI GTCTC 3 cut(s) 906, 986, 1072
BcuI ACTAGT 2 cut(s) 727, 1337
BfaI CTAG 6 cut(s) 129, 728, 956, 962, 1212, 1338
BfmI CTRYAG 1 cut(s) 63
BfuI GTATCC 1 cut(s) 37
BglII AGATCT 1 cut(s) 520
BisI GCNGC 2 cut(s) 391, 976
BlsI GCNGC 2 cut(s) 392, 977
Bme1390I CCNGG 1 cut(s) 395
Bme18I GGWCC 3 cut(s) 133, 670, 1432
BmeT110I CYCGRG 1 cut(s) 405
BmgT120I GGNCC 3 cut(s) 133, 670, 1432
BmiI GGNNCC 3 cut(s) 134, 672, 1434
BmrFI CCNGG 1 cut(s) 395
BmsI GCATC 2 cut(s) 462, 1145
BpiI GAAGAC 1 cut(s) 343
BpmI CTGGAG 1 cut(s) 1170
Bpu10I CCTNAGC 1 cut(s) 177
BpuMI CCSGG 1 cut(s) 395
BsaBI GATNNNNATC 1 cut(s) 805
BsaJI CCNNGG 2 cut(s) 642, 1428
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 465
Bse1I ACTGG 4 cut(s) 343, 531, 768, 1153
Bse3DI GCAATG 1 cut(s) 1039
Bse8I GATNNNNATC 1 cut(s) 805
BseDI CCNNGG 2 cut(s) 642, 1428
BseGI GGATG 2 cut(s) 415, 535
BseJI GATNNNNATC 1 cut(s) 805
BseLI CCNNNNNNNGG 2 cut(s) 35, 465
BseMI GCAATG 1 cut(s) 1039
BseMII CTCAG 5 cut(s) 48, 191, 594, 1019, 1083
BseNI ACTGG 4 cut(s) 343, 531, 768, 1153
BseSI GKGCMC 2 cut(s) 482, 1055
BseXI GCAGC 2 cut(s) 377, 987
BsgI GTGCAG 1 cut(s) 798
Bsh1236I CGCG 1 cut(s) 1306
BsiHKAI GWGCWC 5 cut(s) 451, 482, 1055, 1170, 1211
BsiHKCI CYCGRG 1 cut(s) 405
BsiSI CCGG 1 cut(s) 395
BslFI GGGAC 2 cut(s) 332, 922
BslI CCNNNNNNNGG 2 cut(s) 35, 465
BsmAI GTCTC 3 cut(s) 906, 986, 1072
BsmBI CGTCTC 1 cut(s) 906
BsmFI GGGAC 2 cut(s) 332, 922
BsoBI CYCGRG 1 cut(s) 405
Bsp1286I GDGCHC 5 cut(s) 451, 482, 1055, 1170, 1211
Bsp143I GATC 2 cut(s) 520, 745
Bsp19I CCATGG 1 cut(s) 642
BspACI CCGC 2 cut(s) 21, 668
BspCNI CTCAG 5 cut(s) 47, 190, 595, 1020, 1082
BspFNI CGCG 1 cut(s) 1306
BspHI TCATGA 2 cut(s) 280, 1203
BspLI GGNNCC 3 cut(s) 134, 672, 1434
BsrDI GCAATG 1 cut(s) 1039
BsrI ACTGG 4 cut(s) 343, 531, 768, 1153
BssECI CCNNGG 2 cut(s) 642, 1428
BssMI GATC 2 cut(s) 520, 745
BssT1I CCWWGG 2 cut(s) 642, 1428
Bst4CI ACNGT 4 cut(s) 692, 1084, 1330, 1476
Bst6I CTCTTC 2 cut(s) 426, 1578
BstC8I GCNNGC 4 cut(s) 388, 451, 482, 1247
BstDEI CTNAG 6 cut(s) 34, 177, 603, 1028, 1069, 1586
BstDSI CCRYGG 1 cut(s) 642
BstF5I GGATG 2 cut(s) 415, 535
BstFNI CGCG 1 cut(s) 1306
BstHHI GCGC 1 cut(s) 1306
BstKTI GATC 2 cut(s) 523, 748
BstMAI GTCTC 3 cut(s) 906, 986, 1072
BstMBI GATC 2 cut(s) 520, 745
BstMWI GCNNNNNNNGC 1 cut(s) 1215
BstNSI RCATGY 2 cut(s) 390, 488
BstSCI CCNGG 1 cut(s) 393
BstSFI CTRYAG 1 cut(s) 63
BstSLI GKGCMC 2 cut(s) 482, 1055
BstUI CGCG 1 cut(s) 1306
BstV1I GCAGC 2 cut(s) 377, 987
BstV2I GAAGAC 1 cut(s) 343
BstX2I RGATCY 1 cut(s) 520
BstYI RGATCY 1 cut(s) 520
BsuI GTATCC 1 cut(s) 37
BtgI CCRYGG 1 cut(s) 642
BtsCI GGATG 2 cut(s) 415, 535
BtsIMutI CAGTG 4 cut(s) 273, 600, 778, 1146
Cac8I GCNNGC 4 cut(s) 388, 451, 482, 1247
CciI TCATGA 2 cut(s) 280, 1203
CfoI GCGC 1 cut(s) 1306
Cfr13I GGNCC 3 cut(s) 133, 670, 1432
CseI GACGC 2 cut(s) 888, 1224
Csp6I GTAC 3 cut(s) 342, 1326, 1472
CviQI GTAC 3 cut(s) 342, 1326, 1472
DdeI CTNAG 6 cut(s) 34, 177, 603, 1028, 1069, 1586
DpnI GATC 2 cut(s) 522, 747
DpnII GATC 2 cut(s) 520, 745
DraI TTTAAA 2 cut(s) 696, 805
Eam1104I CTCTTC 2 cut(s) 426, 1578
EarI CTCTTC 2 cut(s) 426, 1578
Ecl136II GAGCTC 1 cut(s) 1209
Eco130I CCWWGG 2 cut(s) 642, 1428
Eco24I GRGCYC 1 cut(s) 1211
Eco32I GATATC 1 cut(s) 165
Eco47I GGWCC 3 cut(s) 133, 670, 1432
Eco53kI GAGCTC 1 cut(s) 1209
Eco57I CTGAAG 3 cut(s) 337, 1357, 1542
Eco88I CYCGRG 1 cut(s) 405
EcoICRI GAGCTC 1 cut(s) 1209
EcoO109I RGGNCCY 1 cut(s) 1432
EcoRV GATATC 1 cut(s) 165
EcoT14I CCWWGG 2 cut(s) 642, 1428
EcoT38I GRGCYC 1 cut(s) 1211
ErhI CCWWGG 2 cut(s) 642, 1428
Esp3I CGTCTC 1 cut(s) 906
FaqI GGGAC 2 cut(s) 332, 922
FauI CCCGC 1 cut(s) 28
Fnu4HI GCNGC 2 cut(s) 391, 976
FokI GGATG 2 cut(s) 402, 542
FriOI GRGCYC 1 cut(s) 1211
Fsp4HI GCNGC 2 cut(s) 391, 976
FspBI CTAG 6 cut(s) 129, 728, 956, 962, 1212, 1338
GlaI GCGC 1 cut(s) 1305
GluI GCNGC 2 cut(s) 391, 976
GsuI CTGGAG 1 cut(s) 1170
HapII CCGG 1 cut(s) 395
HgaI GACGC 2 cut(s) 888, 1224
HhaI GCGC 1 cut(s) 1306
Hin6I GCGC 1 cut(s) 1304
HinP1I GCGC 1 cut(s) 1304
HincII GTYRAC 1 cut(s) 496
HindII GTYRAC 1 cut(s) 496
HindIII AAGCTT 1 cut(s) 1247
HpaII CCGG 1 cut(s) 395
HphI GGTGA 5 cut(s) 50, 448, 755, 865, 1171
Hpy166II GTNNAC 4 cut(s) 136, 480, 496, 1053
Hpy188III TCNNGA 9 cut(s) 281, 405, 425, 473, 683, 956, 983, 1204, 1212
Hpy8I GTNNAC 4 cut(s) 136, 480, 496, 1053
HpyAV CCTTC 3 cut(s) 641, 791, 1477
HpyCH4III ACNGT 4 cut(s) 692, 1084, 1330, 1476
HpyCH4IV ACGT 2 cut(s) 242, 302
HpyF10VI GCNNNNNNNGC 1 cut(s) 1215
HpyF3I CTNAG 6 cut(s) 34, 177, 603, 1028, 1069, 1586
HpySE526I ACGT 2 cut(s) 242, 302
HspAI GCGC 1 cut(s) 1304
Kzo9I GATC 2 cut(s) 520, 745
LmnI GCTCC 1 cut(s) 1173
Lsp1109I GCAGC 2 cut(s) 377, 987
LweI GCATC 2 cut(s) 462, 1145
MaeI CTAG 6 cut(s) 129, 728, 956, 962, 1212, 1338
MaeII ACGT 2 cut(s) 242, 302
MaeIII GTNAC 5 cut(s) 285, 614, 1177, 1223, 1333
MalI GATC 2 cut(s) 522, 747
MboI GATC 2 cut(s) 520, 745
MflI RGATCY 1 cut(s) 520
MhlI GDGCHC 5 cut(s) 451, 482, 1055, 1170, 1211
MluCI AATT 9 cut(s) 147, 216, 432, 737, 792, 856, 921, 1360, 1526
MlyI GAGTC 2 cut(s) 478, 713
MmeI TCCRAC 5 cut(s) 65, 541, 656, 696, 974
MroXI GAANNNNTTC 1 cut(s) 1403
MseI TTAA 7 cut(s) 249, 695, 791, 804, 887, 1251, 1533
MslI CAYNNNNRTG 3 cut(s) 485, 509, 1058
MspI CCGG 1 cut(s) 395
MspR9I CCNGG 1 cut(s) 395
MvnI CGCG 1 cut(s) 1306
MwoI GCNNNNNNNGC 1 cut(s) 1215
NciI CCSGG 1 cut(s) 395
NcoI CCATGG 1 cut(s) 642
NdeII GATC 2 cut(s) 520, 745
NlaIV GGNNCC 3 cut(s) 134, 672, 1434
NmuCI GTSAC 2 cut(s) 1177, 1223
NspI RCATGY 2 cut(s) 390, 488
OliI CACNNNNGTG 2 cut(s) 485, 1058
PaeI GCATGC 1 cut(s) 390
PaeR7I CTCGAG 1 cut(s) 405
PagI TCATGA 2 cut(s) 280, 1203
PdmI GAANNNNTTC 1 cut(s) 1403
PfeI GAWTC 9 cut(s) 155, 277, 412, 784, 1094, 1256, 1353, 1445, 1582
PflFI GACNNNGTC 1 cut(s) 500
PkrI GCNGC 2 cut(s) 392, 977
PleI GAGTC 2 cut(s) 477, 713
PpsI GAGTC 2 cut(s) 477, 713
PpuMI RGGWCCY 1 cut(s) 1432
PsiI TTATAA 1 cut(s) 873
Psp124BI GAGCTC 1 cut(s) 1211
Psp5II RGGWCCY 1 cut(s) 1432
PspN4I GGNNCC 3 cut(s) 134, 672, 1434
PspPI GGNCC 3 cut(s) 133, 670, 1432
PspPPI RGGWCCY 1 cut(s) 1432
PsuI RGATCY 1 cut(s) 520
PsyI GACNNNGTC 1 cut(s) 500
RsaI GTAC 3 cut(s) 343, 1327, 1473
RsaNI GTAC 3 cut(s) 342, 1326, 1472
RseI CAYNNNNRTG 3 cut(s) 485, 509, 1058
SacI GAGCTC 1 cut(s) 1211
SaqAI TTAA 7 cut(s) 249, 695, 791, 804, 887, 1251, 1533
SatI GCNGC 2 cut(s) 391, 976
Sau3AI GATC 2 cut(s) 520, 745
Sau96I GGNCC 3 cut(s) 133, 670, 1432
SchI GAGTC 2 cut(s) 478, 713
ScrFI CCNGG 1 cut(s) 395
SduI GDGCHC 5 cut(s) 451, 482, 1055, 1170, 1211
SfaNI GCATC 2 cut(s) 462, 1145
SfcI CTRYAG 1 cut(s) 63
Sfr274I CTCGAG 1 cut(s) 405
SinI GGWCC 3 cut(s) 133, 670, 1432
SlaI CTCGAG 1 cut(s) 405
SmiI ATTTAAAT 1 cut(s) 805
SmiMI CAYNNNNRTG 3 cut(s) 485, 509, 1058
SmlI CTYRAG 1 cut(s) 405
SmoI CTYRAG 1 cut(s) 405
SpeI ACTAGT 2 cut(s) 727, 1337
SphI GCATGC 1 cut(s) 390
Sse9I AATT 9 cut(s) 147, 216, 432, 737, 792, 856, 921, 1360, 1526
SsiI CCGC 2 cut(s) 21, 668
SspI AATATT 2 cut(s) 106, 1387
SspMI CTAG 6 cut(s) 129, 728, 956, 962, 1212, 1338
SstI GAGCTC 1 cut(s) 1211
StyD4I CCNGG 1 cut(s) 393
StyI CCWWGG 2 cut(s) 642, 1428
SwaI ATTTAAAT 1 cut(s) 805
TaaI ACNGT 4 cut(s) 692, 1084, 1330, 1476
TaiI ACGT 2 cut(s) 245, 305
TaqI TCGA 5 cut(s) 406, 682, 984, 1008, 1549
TaqII GACCGA 1 cut(s) 646
TasI AATT 9 cut(s) 147, 216, 432, 737, 792, 856, 921, 1360, 1526
TfiI GAWTC 9 cut(s) 155, 277, 412, 784, 1094, 1256, 1353, 1445, 1582
Tru1I TTAA 7 cut(s) 249, 695, 791, 804, 887, 1251, 1533
Tru9I TTAA 7 cut(s) 249, 695, 791, 804, 887, 1251, 1533
TscAI CASTG 4 cut(s) 273, 607, 778, 1153
TseFI GTSAC 2 cut(s) 1177, 1223
TseI GCWGC 2 cut(s) 390, 975
Tsp45I GTSAC 2 cut(s) 1177, 1223
TspGWI ACGGA 1 cut(s) 1033
TspRI CASTG 4 cut(s) 273, 607, 778, 1153
Tth111I GACNNNGTC 1 cut(s) 500
VneI GTGCAC 2 cut(s) 478, 1051
VpaK11BI GGWCC 3 cut(s) 133, 670, 1432
XapI RAATTY 5 cut(s) 432, 737, 856, 921, 1360
XbaI TCTAGA 2 cut(s) 955, 1211
XceI RCATGY 2 cut(s) 390, 488
XcmI CCANNNNNNNNNTGG 1 cut(s) 1123
XhoI CTCGAG 1 cut(s) 405
XmnI GAANNNNTTC 1 cut(s) 1403
XspI CTAG 6 cut(s) 129, 728, 956, 962, 1212, 1338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.