Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0003629

Physical Location & Seq

Genomic Coordinates Reverse (-)

21192527 .. 21203521

Gene Structure 10995 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1215000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGAACGACGCTCGGAGCTCTGATCCATTGGATCCGCTGCAGGGTTTCACAGGCCTCTCCCTCTTCCACCAGAGCTTCAAGGCCATCCCAGACAGTTCAACTTCCATTCCCTTCGATTTTGACCCCAACCTGCAAGCCATCCATTCCCAATTCAACTCCACGGCCTCACAAGTTAAACTTGTAGATCAGGTGAAAAACATTTTAAGTGATACTTCGAAAATTCTGAAGTCTGGTATTCCACAAGCTAAACAGAATAGTGAAGTTGTTCCTGAAAAGGCTGAGGATAATCCCCTACAAAGAATACCAGCCTCCGGTCGTGAACTTGCTCGTTTTTCTGTGAAGCCTAATTCCAGTCAACCTAATATGTGTTCACTACCACCTTTTGACATCAGTTGGCATGAGAATGCTAGAAAAGGAAAAGAGAATTTGAGGGGTGGTGCTGCGTTGGATGCAGATCAGCAAGCCATCCATATCCAACTCAATTCCATGGCCTCACAACATAGTCCAAGTAAACTTAAAGATCAAGTGGAAAACATTGCAAGTGTTACTTCAGAAATTGTGGAGCCTGGTAATCGACAGGCATTGAAACAGAAAAATAAAGTTGTTCCTGAAAAGGCTGCTAAAAGTCCCCGACAAAGAAGACCAGCCTTGGGTCTTAAACGTACTCGGTTTTCTATGAAGCCTGATTCCAGTCAACCTGATACGAATTTGCTACCACCTTTCGATCCCAAAAATTATAAAGACCCAGAGGAATTGTTCAAGGAACATGAAAAATATGAGAATGCTAAAAAAGAATTAGAAAAGCTGAAGGGTGGTGCTATGTTTGATGCATACAAGCACAATCCATCCCCGATTAAACGAACCCGTCGACCATCGGTTATGAGGTTCATTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000777 GO:0000778 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0000819 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006996 GO:0007049 GO:0007059 GO:0007080 GO:0007127 GO:0008150 GO:0008608 GO:0009987 GO:0016043 GO:0019237 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0032991 GO:0034508 GO:0034622 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0048285 GO:0050000 GO:0051179 GO:0051234 GO:0051276 GO:0051303 GO:0051310 GO:0051315 GO:0051316 GO:0051321 GO:0051382 GO:0051383 GO:0051455 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0061982 GO:0065003 GO:0065004 GO:0070013 GO:0070925 GO:0071824 GO:0071840 GO:0097159 GO:0098687 GO:0098813 GO:0140013 GO:0140014 GO:1901363 GO:1903046 GO:1903047 GO:1990837

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

299

Amino Acids

33.3

Weight (kDa)

9.54

Isoelectric Point (pI)

54.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15660
fragaria_vesca	FvH4_6g30920 FvH4_6g30920 FvH4_6g30920 FvH4_6g30920 FvH4_6g30920 FvH4_6g30920 FvH4_6g30920 FvH4_6g30920 FvH4_6g30920
malus_domestica	MD09G1215000.v1.1 MD17G1197700.v1.1
prunus_persica	Prupe.3G073700_v2.0.a1 Prupe.3G073700_v2.0.a1 Prupe.3G073700_v2.0.a1 Prupe.3G073700_v2.0.a1 Prupe.3G073700_v2.0.a1
pyrus_communis	pycom09g13190 pycom17g20260
rosa_chinensis	RchiOBHm_Chr2g0137511
rosa_laevigata	RLG00000019658 RLG00000019659
rosa_multiflora	Rmu_sc0000765.1_g000007
rosa_roxburghii	Rroxscaffold_2G00107040
rosa_rugosa	Rorug02G0342700 Rorug02G0342800 Rorug02G0342900 Rorug02G0343000 Rorug02G0343000 Rorug02G0343000
rosa_samantha	Rh2AG390600 Rh2BG398300 Rh2CG377800 Rh2DG413300
rosa_wichuraiana	Rw2G032000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	738
Acc36I	ACCTGC	1 cut(s)	138
AccI	GTMKAC	1 cut(s)	868
AciI	CCGC	1 cut(s)	35
AclWI	GGATC	4 cut(s)	17, 26, 39, 719
AcsI	RAATTY	3 cut(s)	219, 424, 706
AcuI	CTGAAG	3 cut(s)	245, 534, 827
AfaI	GTAC	1 cut(s)	664
AfiI	CCNNNNNNNGG	3 cut(s)	41, 311, 650
AgsI	TTSAA	5 cut(s)	79, 99, 154, 586, 760
AjnI	CCWGG	1 cut(s)	565
AluBI	AGCT	5 cut(s)	18, 75, 245, 805, 894
AluI	AGCT	5 cut(s)	18, 75, 245, 805, 894
Alw21I	GWGCWC	1 cut(s)	20
AlwI	GGATC	4 cut(s)	17, 26, 39, 719
AoxI	GGCC	4 cut(s)	52, 81, 162, 489
ApeKI	GCWGC	3 cut(s)	37, 440, 617
ApoI	RAATTY	3 cut(s)	219, 424, 706
Asp700I	GAANNNNTTC	1 cut(s)	264
AsuHPI	GGTGA	1 cut(s)	202
AsuII	TTCGAA	1 cut(s)	215
BamHI	GGATCC	1 cut(s)	31
BanII	GRGCYC	1 cut(s)	20
BbsI	GAAGAC	1 cut(s)	646
Bbv12I	GWGCWC	1 cut(s)	20
BbvCI	CCTCAGC	1 cut(s)	279
BbvI	GCAGC	3 cut(s)	24, 427, 604
BccI	CCATC	5 cut(s)	92, 146, 473, 853, 880
BceAI	ACGGC	1 cut(s)	177
BciT130I	CCWGG	1 cut(s)	567
BfaI	CTAG	1 cut(s)	408
BfmI	CTRYAG	1 cut(s)	38
BfuAI	ACCTGC	1 cut(s)	138
BisI	GCNGC	3 cut(s)	38, 441, 618
BlsI	GCNGC	3 cut(s)	39, 442, 619
Bme1390I	CCNGG	1 cut(s)	567
BmiI	GGNNCC	2 cut(s)	33, 564
BmrFI	CCNGG	1 cut(s)	567
BmsI	GCATC	2 cut(s)	439, 817
BpiI	GAAGAC	1 cut(s)	646
Bpu10I	CCTNAGC	1 cut(s)	279
Bpu14I	TTCGAA	1 cut(s)	215
BsaBI	GATNNNNATC	1 cut(s)	453
BsaJI	CCNNGG	3 cut(s)	159, 486, 648
BsaWI	WCCGGW	1 cut(s)	311
Bsc4I	CCNNNNNNNGG	3 cut(s)	41, 311, 650
Bse1I	ACTGG	2 cut(s)	351, 690
Bse3DI	GCAATG	1 cut(s)	534
Bse8I	GATNNNNATC	1 cut(s)	453
BseBI	CCWGG	1 cut(s)	567
BseDI	CCNNGG	3 cut(s)	159, 486, 648
BseGI	GGATG	5 cut(s)	84, 138, 454, 465, 845
BseJI	GATNNNNATC	1 cut(s)	453
BseLI	CCNNNNNNNGG	3 cut(s)	41, 311, 650
BseMI	GCAATG	1 cut(s)	534
BseMII	CTCAG	1 cut(s)	270
BseNI	ACTGG	2 cut(s)	351, 690
BseXI	GCAGC	3 cut(s)	24, 427, 604
Bsh1285I	CGRYCG	1 cut(s)	316
BshFI	GGCC	4 cut(s)	54, 83, 164, 491
BsiEI	CGRYCG	1 cut(s)	316
BsiHKAI	GWGCWC	1 cut(s)	20
BsiSI	CCGG	1 cut(s)	312
BslFI	GGGAC	1 cut(s)	612
BslI	CCNNNNNNNGG	3 cut(s)	41, 311, 650
BsmFI	GGGAC	1 cut(s)	612
BsmI	GAATGC	2 cut(s)	409, 787
BsnI	GGCC	4 cut(s)	54, 83, 164, 491
Bsp119I	TTCGAA	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	20
Bsp143I	GATC	6 cut(s)	22, 31, 184, 454, 520, 724
Bsp19I	CCATGG	1 cut(s)	486
BspACI	CCGC	1 cut(s)	35
BspANI	GGCC	4 cut(s)	54, 83, 164, 491
BspCNI	CTCAG	1 cut(s)	271
BspLI	GGNNCC	2 cut(s)	33, 564
BspMAI	CTGCAG	1 cut(s)	42
BspMI	ACCTGC	1 cut(s)	138
BspPI	GGATC	4 cut(s)	17, 26, 39, 719
BspT104I	TTCGAA	1 cut(s)	215
BsrDI	GCAATG	1 cut(s)	534
BsrI	ACTGG	2 cut(s)	351, 690
BssECI	CCNNGG	3 cut(s)	159, 486, 648
BssMI	GATC	6 cut(s)	22, 31, 184, 454, 520, 724
BssT1I	CCWWGG	2 cut(s)	486, 648
Bst2UI	CCWGG	1 cut(s)	567
Bst4CI	ACNGT	1 cut(s)	95
Bst6I	CTCTTC	1 cut(s)	68
BstBI	TTCGAA	1 cut(s)	215
BstC8I	GCNNGC	2 cut(s)	135, 462
BstDEI	CTNAG	1 cut(s)	279
BstDSI	CCRYGG	2 cut(s)	159, 486
BstF5I	GGATG	5 cut(s)	84, 138, 454, 465, 845
BstKTI	GATC	6 cut(s)	25, 34, 187, 457, 523, 727
BstMBI	GATC	6 cut(s)	22, 31, 184, 454, 520, 724
BstMCI	CGRYCG	1 cut(s)	316
BstMWI	GCNNNNNNNGC	1 cut(s)	449
BstNI	CCWGG	1 cut(s)	567
BstSCI	CCNGG	1 cut(s)	565
BstSFI	CTRYAG	1 cut(s)	38
BstV1I	GCAGC	3 cut(s)	24, 427, 604
BstV2I	GAAGAC	1 cut(s)	646
BstX2I	RGATCY	1 cut(s)	31
BstYI	RGATCY	1 cut(s)	31
BsuRI	GGCC	4 cut(s)	54, 83, 164, 491
BtgI	CCRYGG	2 cut(s)	159, 486
BtsCI	GGATG	5 cut(s)	84, 138, 454, 465, 845
BveI	ACCTGC	1 cut(s)	138
Cac8I	GCNNGC	2 cut(s)	135, 462
CseI	GACGC	1 cut(s)	17
Csp6I	GTAC	1 cut(s)	663
CviAII	CATG	3 cut(s)	398, 487, 767
CviQI	GTAC	1 cut(s)	663
DdeI	CTNAG	1 cut(s)	279
DpnI	GATC	6 cut(s)	24, 33, 186, 456, 522, 726
DpnII	GATC	6 cut(s)	22, 31, 184, 454, 520, 724
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Ecl136II	GAGCTC	1 cut(s)	18
Eco130I	CCWWGG	2 cut(s)	486, 648
Eco147I	AGGCCT	1 cut(s)	54
Eco24I	GRGCYC	1 cut(s)	20
Eco53kI	GAGCTC	1 cut(s)	18
Eco57I	CTGAAG	3 cut(s)	245, 534, 827
EcoICRI	GAGCTC	1 cut(s)	18
EcoRII	CCWGG	1 cut(s)	565
EcoT14I	CCWWGG	2 cut(s)	486, 648
EcoT22I	ATGCAT	1 cut(s)	832
EcoT38I	GRGCYC	1 cut(s)	20
ErhI	CCWWGG	2 cut(s)	486, 648
FaeI	CATG	3 cut(s)	401, 490, 770
FalI	AAGNNNNNCTT	6 cut(s)	162, 194, 196, 228, 532, 564
FaqI	GGGAC	1 cut(s)	612
FatI	CATG	3 cut(s)	397, 486, 766
FblI	GTMKAC	1 cut(s)	868
Fnu4HI	GCNGC	3 cut(s)	38, 441, 618
FokI	GGATG	5 cut(s)	71, 125, 452, 461, 832
FriOI	GRGCYC	1 cut(s)	20
Fsp4HI	GCNGC	3 cut(s)	38, 441, 618
FspBI	CTAG	1 cut(s)	408
GluI	GCNGC	3 cut(s)	38, 441, 618
HaeIII	GGCC	4 cut(s)	54, 83, 164, 491
HapII	CCGG	1 cut(s)	312
HgaI	GACGC	1 cut(s)	17
Hin1II	CATG	3 cut(s)	401, 490, 770
HincII	GTYRAC	3 cut(s)	356, 695, 869
HindII	GTYRAC	3 cut(s)	356, 695, 869
HinfI	GANTC	1 cut(s)	686
HpaII	CCGG	1 cut(s)	312
HphI	GGTGA	1 cut(s)	202
Hpy166II	GTNNAC	6 cut(s)	320, 356, 371, 512, 695, 869
Hpy188I	TCNGA	4 cut(s)	15, 22, 225, 553
Hpy188III	TCNNGA	3 cut(s)	269, 317, 608
Hpy8I	GTNNAC	6 cut(s)	320, 356, 371, 512, 695, 869
Hpy99I	CGWCG	2 cut(s)	11, 870
HpyAV	CCTTC	2 cut(s)	121, 802
HpyCH4III	ACNGT	1 cut(s)	95
HpyCH4IV	ACGT	1 cut(s)	661
HpyCH4V	TGCA	5 cut(s)	40, 133, 452, 539, 830
HpyF10VI	GCNNNNNNNGC	1 cut(s)	449
HpyF3I	CTNAG	1 cut(s)	279
HpySE526I	ACGT	1 cut(s)	661
Hsp92II	CATG	3 cut(s)	401, 490, 770
Kzo9I	GATC	6 cut(s)	22, 31, 184, 454, 520, 724
LmnI	GCTCC	2 cut(s)	15, 562
Lsp1109I	GCAGC	3 cut(s)	24, 427, 604
LweI	GCATC	2 cut(s)	439, 817
MaeI	CTAG	1 cut(s)	408
MaeII	ACGT	1 cut(s)	661
MaeIII	GTNAC	1 cut(s)	544
MalI	GATC	6 cut(s)	24, 33, 186, 456, 522, 726
MboI	GATC	6 cut(s)	22, 31, 184, 454, 520, 724
MboII	GAAGA	2 cut(s)	55, 651
MflI	RGATCY	1 cut(s)	31
MhlI	GDGCHC	1 cut(s)	20
MmeI	TCCRAC	2 cut(s)	426, 499
MnlI	CCTC	9 cut(s)	65, 71, 175, 274, 319, 423, 502, 742, 876
Mph1103I	ATGCAT	1 cut(s)	832
MroXI	GAANNNNTTC	1 cut(s)	264
MseI	TTAA	5 cut(s)	174, 203, 516, 657, 855
MslI	CAYNNNNRTG	1 cut(s)	402
MspA1I	CMGCKG	1 cut(s)	37
MspI	CCGG	1 cut(s)	312
MspR9I	CCNGG	1 cut(s)	567
Mva1269I	GAATGC	2 cut(s)	409, 787
MvaI	CCWGG	1 cut(s)	567
MwoI	GCNNNNNNNGC	1 cut(s)	449
NcoI	CCATGG	1 cut(s)	486
NdeII	GATC	6 cut(s)	22, 31, 184, 454, 520, 724
NlaIII	CATG	3 cut(s)	401, 490, 770
NlaIV	GGNNCC	2 cut(s)	33, 564
NsiI	ATGCAT	1 cut(s)	832
NspV	TTCGAA	1 cut(s)	215
PceI	AGGCCT	1 cut(s)	54
PcsI	WCGNNNNNNNCGW	1 cut(s)	865
PctI	GAATGC	2 cut(s)	409, 787
PdmI	GAANNNNTTC	1 cut(s)	264
PfeI	GAWTC	1 cut(s)	686
PkrI	GCNGC	3 cut(s)	39, 442, 619
PsiI	TTATAA	1 cut(s)	738
Psp124BI	GAGCTC	1 cut(s)	20
Psp6I	CCWGG	1 cut(s)	565
PspGI	CCWGG	1 cut(s)	565
PspN4I	GGNNCC	2 cut(s)	33, 564
PstI	CTGCAG	1 cut(s)	42
PsuI	RGATCY	1 cut(s)	31
RsaI	GTAC	1 cut(s)	664
RsaNI	GTAC	1 cut(s)	663
RseI	CAYNNNNRTG	1 cut(s)	402
SacI	GAGCTC	1 cut(s)	20
SalI	GTCGAC	1 cut(s)	867
SaqAI	TTAA	5 cut(s)	174, 203, 516, 657, 855
SatI	GCNGC	3 cut(s)	38, 441, 618
Sau3AI	GATC	6 cut(s)	22, 31, 184, 454, 520, 724
ScrFI	CCNGG	1 cut(s)	567
SduI	GDGCHC	1 cut(s)	20
SfaNI	GCATC	2 cut(s)	439, 817
SfcI	CTRYAG	1 cut(s)	38
SfuI	TTCGAA	1 cut(s)	215
SmiMI	CAYNNNNRTG	1 cut(s)	402
SseBI	AGGCCT	1 cut(s)	54
SsiI	CCGC	1 cut(s)	35
SspMI	CTAG	1 cut(s)	408
SstI	GAGCTC	1 cut(s)	20
StuI	AGGCCT	1 cut(s)	54
StyD4I	CCNGG	1 cut(s)	565
StyI	CCWWGG	2 cut(s)	486, 648
TaaI	ACNGT	1 cut(s)	95
TaiI	ACGT	1 cut(s)	664
TaqI	TCGA	5 cut(s)	114, 215, 574, 723, 868
TfiI	GAWTC	1 cut(s)	686
Tru1I	TTAA	5 cut(s)	174, 203, 516, 657, 855
Tru9I	TTAA	5 cut(s)	174, 203, 516, 657, 855
TseI	GCWGC	3 cut(s)	37, 440, 617
TspDTI	ATGAA	4 cut(s)	17, 692, 783, 877
XapI	RAATTY	3 cut(s)	219, 424, 706
XmiI	GTMKAC	1 cut(s)	868
XmnI	GAANNNNTTC	1 cut(s)	264
XspI	CTAG	1 cut(s)	408
Zsp2I	ATGCAT	1 cut(s)	832

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.