Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003629

Physical Location & Seq

Genomic Coordinates Forward (+)

42693892 .. 42695579

Gene Structure 1688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0342900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGCCTCTGCACCATCATTGTTTGTTACTGCGACACTTCTAGTGTTCATCTTTGGGTGCTGCAGTACTGTAAATGCTCAGCTCTCTCCCACCTTCTACTCAAAAACTTGCCCAACTCTTCTAAGCGTAGTTCGCACCGCCATGAATCAAGCTGTTACTAAGGAGCCTCGCATGGGTGCCTCCATTCTTCGCTTGTTCTTCCACGACTGCTTTGTCAATGGTTGCGACGCTTCGATTCTGTTGGATGACACTGCTTCCTTCACAGGCGAGAAGAATGCGGGCCCAAACCAGAACTCTGTCAGGGGTTTCGAAGTGATTGACACCATAAAAACTCTCGTGGAAGCAGCTTGTAATGCTACAGTTTATTGTGCAGATATTTTAGCTCTTGCAGCACGAGATGGAGTTGTCTTGCTTGGAGGAACATCATGGACTGTACCACTGGGCCGCAGAGATGCAAGAACGGCAAGCCAAAGCGCCGCCAACAGCAACCTCCCATCTCCATTCGCAGACCTCGCAGCTCTCATCTCAAGCTTCACTGCCAAAGGCTTAACCGCTAATGACATGACCGTGCTCTCTGGGGCTCACACAATAGGCCAAGCACAGTGTTCTTCCTTCAGGACTCGCATCTACAACGAGACCAACATCGACCCAGGCTTTGCCACCACTCGCAAGGCTAGTTGCCCGGCTAGTTCTGGTAATACTAACTTGGCTCCCTTCGACACGACGCCAAACGGCTTTGATAACGACTACTACAAGGCGCTTGTGGGACGTCGTGGGCTTCTTCACTCCGATCAGCAGTTGTTTAATAATGGATCTCAGGATGCGCTGGTTAGAACTTATAGTACCAACGTTGCTGCGTTTAACAGGGATTTTGCTGCGGCCATGGTGAAGATGAGTCGGATTAGTCCTCTTCTGGGAACCAACGGAGAGATCAGGAAAAACTGCAGACTGGTGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000777 GO:0000778 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0000819 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006996 GO:0007049 GO:0007059 GO:0007080 GO:0007127 GO:0008150 GO:0008608 GO:0009987 GO:0016043 GO:0019237 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0032991 GO:0034508 GO:0034622 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0048285 GO:0050000 GO:0051179 GO:0051234 GO:0051276 GO:0051303 GO:0051310 GO:0051315 GO:0051316 GO:0051321 GO:0051382 GO:0051383 GO:0051455 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0061982 GO:0065003 GO:0065004 GO:0070013 GO:0070925 GO:0071824 GO:0071840 GO:0097159 GO:0098687 GO:0098813 GO:0140013 GO:0140014 GO:1901363 GO:1903046 GO:1903047 GO:1990837

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

319

Amino Acids

33.98

Weight (kDa)

8.53

Isoelectric Point (pI)

31.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	44 - 283	5.8e-84	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15660
fragaria_vesca	FvH4_6g30920 FvH4_6g30920 FvH4_6g30920 FvH4_6g30920 FvH4_6g30920 FvH4_6g30920 FvH4_6g30920 FvH4_6g30920 FvH4_6g30920
malus_domestica	MD09G1215000.v1.1 MD17G1197700.v1.1
prunus_persica	Prupe.3G073700_v2.0.a1 Prupe.3G073700_v2.0.a1 Prupe.3G073700_v2.0.a1 Prupe.3G073700_v2.0.a1 Prupe.3G073700_v2.0.a1
pyrus_communis	pycom09g13190 pycom17g20260
rosa_chinensis	RchiOBHm_Chr2g0137511
rosa_laevigata	RLG00000019658 RLG00000019659
rosa_multiflora	Rmu_sc0000765.1_g000007
rosa_roxburghii	Rroxscaffold_2G00107040
rosa_rugosa	Rorug02G0342700 Rorug02G0342800 Rorug02G0342900 Rorug02G0343000 Rorug02G0343000 Rorug02G0343000
rosa_samantha	Rh2AG390600 Rh2BG398300 Rh2CG377800 Rh2DG413300
rosa_wichuraiana	Rw2G032000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	212
AatII	GACGTC	1 cut(s)	772
AccB1I	GGYRCC	1 cut(s)	176
AciI	CCGC	6 cut(s)	138, 278, 445, 477, 552, 878
AclI	AACGTT	1 cut(s)	849
AclWI	GGATC	1 cut(s)	820
AcoI	YGGCCR	1 cut(s)	879
AcuI	CTGAAG	1 cut(s)	598
AcyI	GRCGYC	2 cut(s)	725, 769
AfaI	GTAC	3 cut(s)	67, 435, 844
AfiI	CCNNNNNNNGG	2 cut(s)	173, 914
AjnI	CCWGG	1 cut(s)	649
AluBI	AGCT	6 cut(s)	82, 152, 347, 383, 518, 531
AluI	AGCT	6 cut(s)	82, 152, 347, 383, 518, 531
Alw21I	GWGCWC	1 cut(s)	573
Alw26I	GTCTC	1 cut(s)	629
AlwI	GGATC	1 cut(s)	820
AoxI	GGCC	5 cut(s)	3, 280, 442, 592, 879
ApaI	GGGCCC	1 cut(s)	284
ApeKI	GCWGC	6 cut(s)	60, 344, 389, 515, 854, 875
ArsI	GACNNNNNNTTYG	2 cut(s)	638, 670
AspLEI	GCGC	3 cut(s)	476, 760, 826
AspS9I	GGNCC	3 cut(s)	280, 281, 442
AsuC2I	CCSGG	1 cut(s)	683
AsuHPI	GGTGA	1 cut(s)	898
AsuII	TTCGAA	1 cut(s)	309
BaeGI	GKGCMC	1 cut(s)	284
BanI	GGYRCC	1 cut(s)	176
BanII	GRGCYC	2 cut(s)	284, 583
BauI	CACGAG	2 cut(s)	335, 393
Bbv12I	GWGCWC	1 cut(s)	573
BbvI	GCAGC	6 cut(s)	47, 356, 401, 527, 841, 862
BccI	CCATC	3 cut(s)	22, 392, 502
BceAI	ACGGC	2 cut(s)	477, 748
BcgI	CGANNNNNNTGC	2 cut(s)	257, 291
BciT130I	CCWGG	1 cut(s)	651
BcnI	CCSGG	1 cut(s)	683
BcoDI	GTCTC	1 cut(s)	629
BfaI	CTAG	3 cut(s)	41, 675, 687
BfmI	CTRYAG	3 cut(s)	61, 357, 943
BfoI	RGCGCY	2 cut(s)	477, 761
BisI	GCNGC	9 cut(s)	61, 345, 390, 445, 477, 516, 855, 876, 879
BlpI	GCTNAGC	1 cut(s)	78
BlsI	GCNGC	9 cut(s)	62, 346, 391, 446, 478, 517, 856, 877, 880
BmcAI	AGTACT	1 cut(s)	67
Bme1390I	CCNGG	2 cut(s)	651, 683
BmgT120I	GGNCC	3 cut(s)	280, 281, 442
BmiI	GGNNCC	5 cut(s)	165, 178, 282, 711, 919
BmrFI	CCNGG	2 cut(s)	651, 683
BmrI	ACTGGG	1 cut(s)	449
BmsI	GCATC	3 cut(s)	442, 633, 811
BmuI	ACTGGG	1 cut(s)	449
Bpu1102I	GCTNAGC	1 cut(s)	78
Bpu14I	TTCGAA	1 cut(s)	309
BpuEI	CTTGAG	1 cut(s)	511
BpuMI	CCSGG	1 cut(s)	683
BsaHI	GRCGYC	2 cut(s)	725, 769
BsaI	GGTCTC	1 cut(s)	629
BsaJI	CCNNGG	2 cut(s)	649, 882
Bsc4I	CCNNNNNNNGG	2 cut(s)	173, 914
Bse1I	ACTGG	2 cut(s)	444, 954
BseBI	CCWGG	1 cut(s)	651
BseDI	CCNNGG	2 cut(s)	649, 882
BseGI	GGATG	2 cut(s)	250, 826
BseLI	CCNNNNNNNGG	2 cut(s)	173, 914
BseMII	CTCAG	2 cut(s)	92, 830
BseNI	ACTGG	2 cut(s)	444, 954
BseSI	GKGCMC	1 cut(s)	284
BseXI	GCAGC	6 cut(s)	47, 356, 401, 527, 841, 862
BsgI	GTGCAG	1 cut(s)	390
BshFI	GGCC	5 cut(s)	5, 282, 444, 594, 881
BshNI	GGYRCC	1 cut(s)	176
BsiHKAI	GWGCWC	1 cut(s)	573
BsiSI	CCGG	1 cut(s)	683
BslFI	GGGAC	1 cut(s)	780
BslI	CCNNNNNNNGG	2 cut(s)	173, 914
BsmAI	GTCTC	1 cut(s)	629
BsmFI	GGGAC	1 cut(s)	780
BsmI	GAATGC	1 cut(s)	280
BsnI	GGCC	5 cut(s)	5, 282, 444, 594, 881
Bso31I	GGTCTC	1 cut(s)	629
Bsp119I	TTCGAA	1 cut(s)	309
Bsp120I	GGGCCC	1 cut(s)	280
Bsp1286I	GDGCHC	3 cut(s)	284, 573, 583
Bsp143I	GATC	3 cut(s)	790, 812, 930
Bsp1720I	GCTNAGC	1 cut(s)	78
Bsp19I	CCATGG	1 cut(s)	882
BspACI	CCGC	6 cut(s)	138, 278, 445, 477, 552, 878
BspANI	GGCC	5 cut(s)	5, 282, 444, 594, 881
BspCNI	CTCAG	2 cut(s)	91, 829
BspLI	GGNNCC	5 cut(s)	165, 178, 282, 711, 919
BspMAI	CTGCAG	2 cut(s)	65, 947
BspPI	GGATC	1 cut(s)	820
BspT104I	TTCGAA	1 cut(s)	309
BspT107I	GGYRCC	1 cut(s)	176
BspTNI	GGTCTC	1 cut(s)	629
BsrI	ACTGG	2 cut(s)	444, 954
BssECI	CCNNGG	2 cut(s)	649, 882
BssMI	GATC	3 cut(s)	790, 812, 930
BssNI	GRCGYC	2 cut(s)	725, 769
BssSI	CACGAG	2 cut(s)	335, 393
BssT1I	CCWWGG	1 cut(s)	882
Bst2BI	CACGAG	2 cut(s)	335, 393
Bst2UI	CCWGG	1 cut(s)	651
Bst4CI	ACNGT	5 cut(s)	70, 361, 433, 568, 603
Bst6I	CTCTTC	2 cut(s)	123, 915
BstACI	GRCGYC	2 cut(s)	725, 769
BstBI	TTCGAA	1 cut(s)	309
BstC8I	GCNNGC	2 cut(s)	280, 466
BstDEI	CTNAG	4 cut(s)	78, 122, 159, 816
BstDSI	CCRYGG	1 cut(s)	882
BstF5I	GGATG	2 cut(s)	250, 826
BstH2I	RGCGCY	2 cut(s)	477, 761
BstHHI	GCGC	3 cut(s)	476, 760, 826
BstKTI	GATC	3 cut(s)	793, 815, 933
BstMAI	GTCTC	1 cut(s)	629
BstMBI	GATC	3 cut(s)	790, 812, 930
BstMWI	GCNNNNNNNGC	5 cut(s)	132, 353, 389, 461, 512
BstNI	CCWGG	1 cut(s)	651
BstSCI	CCNGG	2 cut(s)	649, 681
BstSFI	CTRYAG	3 cut(s)	61, 357, 943
BstSLI	GKGCMC	1 cut(s)	284
BstV1I	GCAGC	6 cut(s)	47, 356, 401, 527, 841, 862
BstX2I	RGATCY	1 cut(s)	812
BstYI	RGATCY	1 cut(s)	812
BsuRI	GGCC	5 cut(s)	5, 282, 444, 594, 881
BtgI	CCRYGG	1 cut(s)	882
BtsCI	GGATG	2 cut(s)	250, 826
BtsI	GCAGTG	2 cut(s)	249, 534
BtsIMutI	CAGTG	4 cut(s)	249, 437, 534, 608
Cac8I	GCNNGC	2 cut(s)	280, 466
CfoI	GCGC	3 cut(s)	476, 760, 826
Cfr13I	GGNCC	3 cut(s)	280, 281, 442
CseI	GACGC	2 cut(s)	236, 733
Csp6I	GTAC	3 cut(s)	66, 434, 843
CviAII	CATG	5 cut(s)	142, 172, 426, 562, 883
CviQI	GTAC	3 cut(s)	66, 434, 843
DdeI	CTNAG	4 cut(s)	78, 122, 159, 816
DpnI	GATC	3 cut(s)	792, 814, 932
DpnII	GATC	3 cut(s)	790, 812, 930
DrdI	GACNNNNNNGTC	1 cut(s)	212
DseDI	GACNNNNNNGTC	1 cut(s)	212
EaeI	YGGCCR	1 cut(s)	879
Eam1104I	CTCTTC	2 cut(s)	123, 915
EarI	CTCTTC	2 cut(s)	123, 915
Eco130I	CCWWGG	1 cut(s)	882
Eco24I	GRGCYC	2 cut(s)	284, 583
Eco31I	GGTCTC	1 cut(s)	629
Eco57I	CTGAAG	1 cut(s)	598
EcoRII	CCWGG	1 cut(s)	649
EcoT14I	CCWWGG	1 cut(s)	882
EcoT38I	GRGCYC	2 cut(s)	284, 583
ErhI	CCWWGG	1 cut(s)	882
FaeI	CATG	5 cut(s)	145, 175, 429, 565, 886
FaiI	YATR	7 cut(s)	143, 173, 326, 427, 563, 840, 884
FaqI	GGGAC	1 cut(s)	780
FatI	CATG	5 cut(s)	141, 171, 425, 561, 882
FauI	CCCGC	1 cut(s)	271
Fnu4HI	GCNGC	9 cut(s)	61, 345, 390, 445, 477, 516, 855, 876, 879
FokI	GGATG	2 cut(s)	257, 833
FriOI	GRGCYC	2 cut(s)	284, 583
Fsp4HI	GCNGC	9 cut(s)	61, 345, 390, 445, 477, 516, 855, 876, 879
FspBI	CTAG	3 cut(s)	41, 675, 687
GlaI	GCGC	3 cut(s)	475, 759, 825
GluI	GCNGC	9 cut(s)	61, 345, 390, 445, 477, 516, 855, 876, 879
HaeII	RGCGCY	2 cut(s)	477, 761
HaeIII	GGCC	5 cut(s)	5, 282, 444, 594, 881
HapII	CCGG	1 cut(s)	683
HgaI	GACGC	2 cut(s)	236, 733
HhaI	GCGC	3 cut(s)	476, 760, 826
Hin1I	GRCGYC	2 cut(s)	725, 769
Hin1II	CATG	5 cut(s)	145, 175, 429, 565, 886
Hin6I	GCGC	3 cut(s)	474, 758, 824
HinP1I	GCGC	3 cut(s)	474, 758, 824
HindIII	AAGCTT	1 cut(s)	529
HinfI	GANTC	4 cut(s)	145, 235, 619, 895
HpaII	CCGG	1 cut(s)	683
HphI	GGTGA	1 cut(s)	898
Hpy188I	TCNGA	2 cut(s)	790, 900
Hpy188III	TCNNGA	3 cut(s)	616, 818, 934
Hpy99I	CGWCG	3 cut(s)	230, 727, 774
HpyAV	CCTTC	4 cut(s)	103, 268, 622, 724
HpyCH4III	ACNGT	5 cut(s)	70, 361, 433, 568, 603
HpyCH4IV	ACGT	2 cut(s)	769, 849
HpyCH4V	TGCA	6 cut(s)	11, 63, 371, 389, 455, 945
HpyF10VI	GCNNNNNNNGC	5 cut(s)	132, 353, 389, 461, 512
HpyF3I	CTNAG	4 cut(s)	78, 122, 159, 816
HpySE526I	ACGT	2 cut(s)	769, 849
Hsp92I	GRCGYC	2 cut(s)	725, 769
Hsp92II	CATG	5 cut(s)	145, 175, 429, 565, 886
HspAI	GCGC	3 cut(s)	474, 758, 824
Kzo9I	GATC	3 cut(s)	790, 812, 930
LmnI	GCTCC	2 cut(s)	163, 715
Lsp1109I	GCAGC	6 cut(s)	47, 356, 401, 527, 841, 862
LweI	GCATC	3 cut(s)	442, 633, 811
MaeI	CTAG	3 cut(s)	41, 675, 687
MaeII	ACGT	2 cut(s)	769, 849
MaeIII	GTNAC	2 cut(s)	25, 154
MalI	GATC	3 cut(s)	792, 814, 932
MboI	GATC	3 cut(s)	790, 812, 930
MboII	GAAGA	8 cut(s)	110, 179, 190, 283, 600, 773, 901, 902
MflI	RGATCY	1 cut(s)	812
MhlI	GDGCHC	3 cut(s)	284, 573, 583
MluCI	AATT	1 cut(s)	955
MlyI	GAGTC	2 cut(s)	613, 904
MmeI	TCCRAC	2 cut(s)	222, 878
MnlI	CCTC	7 cut(s)	16, 177, 190, 410, 500, 521, 918
MseI	TTAA	4 cut(s)	548, 804, 861, 958
MslI	CAYNNNNRTG	2 cut(s)	140, 566
MspI	CCGG	1 cut(s)	683
MspR9I	CCNGG	2 cut(s)	651, 683
Mva1269I	GAATGC	1 cut(s)	280
MvaI	CCWGG	1 cut(s)	651
MwoI	GCNNNNNNNGC	5 cut(s)	132, 353, 389, 461, 512
NciI	CCSGG	1 cut(s)	683
NcoI	CCATGG	1 cut(s)	882
NdeII	GATC	3 cut(s)	790, 812, 930
NlaIII	CATG	5 cut(s)	145, 175, 429, 565, 886
NlaIV	GGNNCC	5 cut(s)	165, 178, 282, 711, 919
NspV	TTCGAA	1 cut(s)	309
PctI	GAATGC	1 cut(s)	280
PfeI	GAWTC	2 cut(s)	145, 235
PkrI	GCNGC	9 cut(s)	62, 346, 391, 446, 478, 517, 856, 877, 880
PleI	GAGTC	2 cut(s)	613, 903
PpsI	GAGTC	2 cut(s)	613, 903
Psp1406I	AACGTT	1 cut(s)	849
Psp6I	CCWGG	1 cut(s)	649
PspGI	CCWGG	1 cut(s)	649
PspN4I	GGNNCC	5 cut(s)	165, 178, 282, 711, 919
PspOMI	GGGCCC	1 cut(s)	280
PspPI	GGNCC	3 cut(s)	280, 281, 442
PsrI	GAACNNNNNNTAC	2 cut(s)	826, 858
PstI	CTGCAG	2 cut(s)	65, 947
PsuI	RGATCY	1 cut(s)	812
RsaI	GTAC	3 cut(s)	67, 435, 844
RsaNI	GTAC	3 cut(s)	66, 434, 843
RseI	CAYNNNNRTG	2 cut(s)	140, 566
SaqAI	TTAA	4 cut(s)	548, 804, 861, 958
SatI	GCNGC	9 cut(s)	61, 345, 390, 445, 477, 516, 855, 876, 879
Sau3AI	GATC	3 cut(s)	790, 812, 930
Sau96I	GGNCC	3 cut(s)	280, 281, 442
ScaI	AGTACT	1 cut(s)	67
SchI	GAGTC	2 cut(s)	613, 904
ScrFI	CCNGG	2 cut(s)	651, 683
SduI	GDGCHC	3 cut(s)	284, 573, 583
SfaNI	GCATC	3 cut(s)	442, 633, 811
SfcI	CTRYAG	3 cut(s)	61, 357, 943
SfuI	TTCGAA	1 cut(s)	309
SmiMI	CAYNNNNRTG	2 cut(s)	140, 566
SmlI	CTYRAG	1 cut(s)	526
SmoI	CTYRAG	1 cut(s)	526
Sse9I	AATT	1 cut(s)	955
SsiI	CCGC	6 cut(s)	138, 278, 445, 477, 552, 878
SspMI	CTAG	3 cut(s)	41, 675, 687
StyD4I	CCNGG	2 cut(s)	649, 681
StyI	CCWWGG	1 cut(s)	882
TaaI	ACNGT	5 cut(s)	70, 361, 433, 568, 603
TaiI	ACGT	2 cut(s)	772, 852
TaqI	TCGA	4 cut(s)	233, 309, 645, 717
TasI	AATT	1 cut(s)	955
TatI	WGTACW	1 cut(s)	65
TauI	GCSGC	3 cut(s)	447, 479, 881
TfiI	GAWTC	2 cut(s)	145, 235
Tru1I	TTAA	4 cut(s)	548, 804, 861, 958
Tru9I	TTAA	4 cut(s)	548, 804, 861, 958
TscAI	CASTG	4 cut(s)	256, 444, 541, 608
TseI	GCWGC	6 cut(s)	60, 344, 389, 515, 854, 875
TspDTI	ATGAA	2 cut(s)	37, 158
TspGWI	ACGGA	1 cut(s)	939
TspRI	CASTG	4 cut(s)	256, 444, 541, 608
XspI	CTAG	3 cut(s)	41, 675, 687
ZraI	GACGTC	1 cut(s)	770
ZrmI	AGTACT	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.