Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003629

Physical Location & Seq

Genomic Coordinates Forward (+)

55077162 .. 55078593

Gene Structure 1432 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019658

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGAGTGGCGACTCCCGCTTGTGCTCACATTCAACTTTCTTTGAAAAATTAGGGCTACTTCTCAAATGTGGAGATGAGTCGGAGCTCCGATCCAGTCGACCCGCTTCTGGGCTGCACTCTCTTCCCCAAGGACAAGTTCTCGTCGGACCCTTCCAAGCCCTACGACTTCGACCACGACCTCCAAGCCATCAAAATTGCCTTTTGTTGAAATTTCACGAACTTGATAGTGCCTCACTATCTGGTCTTAAAGATCACGCGAAGAACATTTTAAGTGGCAGTTCAGTTATTCCGCAGTCTGATATGTCACAAGCATTGAAATGCCTAAACGGAGTGGTTCCTGCAAATGATGTGGACAATCACCGAGAGGGAAGACCTGCCTTGGGTCTTAAACGCGCTCGTTTTTCTTTGAAACCTAATTCCAGTCAACCTGATATTAATTTGGGACCAACGTTCGATTTATTGAGTAGGAGAAGTTTAGTGTCAATTCCATCAAATGATCCATTTTCAGCTTTTGATATTGATCAGTTTCGGGTGACAAATCCTTCTTCAGTTGAGAACAGAAACAAACAATCTGATCGGATTGGCATTGCAGAGCAGAAAATGATTTCTGATACGTTGAAGTCACCTTTAATTAAACAAGGTGACAAGATTGAAGGTGCCAAGACAGGTTCATGTGAGGTGGCTGTTAAAGAATTCACTAATGCATCGAAAAGGTCTAAGAGGGACGGGGACAGTTTAAGTAAAGTTGGTGTTGGTTATGAAGCTGACACGGAGGAGGAGACTGGAGGCGGTAAGGTTACGAGTGAGACGTTAAATACTGGTGGAAGACAAGCTGCAGGAAGCAGGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000777 GO:0000778 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0000819 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006996 GO:0007049 GO:0007059 GO:0007080 GO:0007127 GO:0008150 GO:0008608 GO:0009987 GO:0016043 GO:0019237 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0032991 GO:0034508 GO:0034622 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0048285 GO:0050000 GO:0051179 GO:0051234 GO:0051276 GO:0051303 GO:0051310 GO:0051315 GO:0051316 GO:0051321 GO:0051382 GO:0051383 GO:0051455 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0061982 GO:0065003 GO:0065004 GO:0070013 GO:0070925 GO:0071824 GO:0071840 GO:0097159 GO:0098687 GO:0098813 GO:0140013 GO:0140014 GO:1901363 GO:1903046 GO:1903047 GO:1990837

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

284

Amino Acids

30.47

Weight (kDa)

8.95

Isoelectric Point (pI)

58.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15660
fragaria_vesca	FvH4_6g30920 FvH4_6g30920 FvH4_6g30920 FvH4_6g30920 FvH4_6g30920 FvH4_6g30920 FvH4_6g30920 FvH4_6g30920 FvH4_6g30920
malus_domestica	MD09G1215000.v1.1 MD17G1197700.v1.1
prunus_persica	Prupe.3G073700_v2.0.a1 Prupe.3G073700_v2.0.a1 Prupe.3G073700_v2.0.a1 Prupe.3G073700_v2.0.a1 Prupe.3G073700_v2.0.a1
pyrus_communis	pycom09g13190 pycom17g20260
rosa_chinensis	RchiOBHm_Chr2g0137511
rosa_laevigata	RLG00000019658 RLG00000019659
rosa_multiflora	Rmu_sc0000765.1_g000007
rosa_roxburghii	Rroxscaffold_2G00107040
rosa_rugosa	Rorug02G0342700 Rorug02G0342800 Rorug02G0342900 Rorug02G0343000 Rorug02G0343000 Rorug02G0343000
rosa_samantha	Rh2AG390600 Rh2BG398300 Rh2CG377800 Rh2DG413300
rosa_wichuraiana	Rw2G032000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	382, 834
AccB1I	GGYRCC	1 cut(s)	656
AccI	GTMKAC	1 cut(s)	97
AccII	CGCG	2 cut(s)	257, 393
AciI	CCGC	4 cut(s)	16, 102, 290, 789
AclI	AACGTT	1 cut(s)	449
AclWI	GGATC	2 cut(s)	84, 491
AcsI	RAATTY	2 cut(s)	209, 692
AcuI	CTGAAG	1 cut(s)	531
AfiI	CCNNNNNNNGG	3 cut(s)	107, 108, 380
AgsI	TTSAA	7 cut(s)	33, 44, 208, 316, 409, 619, 653
AjuI	GAANNNNNNNTTGG	2 cut(s)	120, 152
AluBI	AGCT	4 cut(s)	85, 509, 764, 833
AluI	AGCT	4 cut(s)	85, 509, 764, 833
Alw21I	GWGCWC	2 cut(s)	26, 87
Alw26I	GTCTC	2 cut(s)	773, 800
AlwI	GGATC	2 cut(s)	84, 491
AlwNI	CAGNNNCTG	1 cut(s)	849
ApeKI	GCWGC	2 cut(s)	112, 833
ApoI	RAATTY	2 cut(s)	209, 692
AseI	ATTAAT	1 cut(s)	435
AspLEI	GCGC	1 cut(s)	395
AspS9I	GGNCC	3 cut(s)	146, 443, 846
AsuHPI	GGTGA	4 cut(s)	350, 544, 615, 653
AvaII	GGWCC	3 cut(s)	146, 443, 846
BanI	GGYRCC	1 cut(s)	656
BanII	GRGCYC	1 cut(s)	87
BbsI	GAAGAC	2 cut(s)	376, 832
Bbv12I	GWGCWC	2 cut(s)	26, 87
BbvI	GCAGC	2 cut(s)	99, 820
BccI	CCATC	2 cut(s)	195, 496
BclI	TGATCA	1 cut(s)	520
BcoDI	GTCTC	2 cut(s)	773, 800
BfmI	CTRYAG	1 cut(s)	834
BfuAI	ACCTGC	2 cut(s)	382, 834
BisI	GCNGC	2 cut(s)	113, 834
BlsI	GCNGC	2 cut(s)	114, 835
Bme18I	GGWCC	3 cut(s)	146, 443, 846
BmgT120I	GGNCC	3 cut(s)	146, 443, 846
BmiI	GGNNCC	4 cut(s)	148, 336, 444, 658
BmsI	GCATC	1 cut(s)	713
BpiI	GAAGAC	2 cut(s)	376, 832
BpmI	CTGGAG	1 cut(s)	804
BsaBI	GATNNNNATC	1 cut(s)	519
BsaJI	CCNNGG	2 cut(s)	127, 378
Bsc4I	CCNNNNNNNGG	3 cut(s)	107, 108, 380
Bse1I	ACTGG	4 cut(s)	93, 420, 787, 823
Bse3DI	GCAATG	1 cut(s)	585
Bse8I	GATNNNNATC	1 cut(s)	519
BseDI	CCNNGG	2 cut(s)	127, 378
BseJI	GATNNNNATC	1 cut(s)	519
BseLI	CCNNNNNNNGG	3 cut(s)	107, 108, 380
BseMI	GCAATG	1 cut(s)	585
BseNI	ACTGG	4 cut(s)	93, 420, 787, 823
BseRI	GAGGAG	2 cut(s)	788, 791
BseXI	GCAGC	2 cut(s)	99, 820
BsgI	GTGCAG	1 cut(s)	98
Bsh1236I	CGCG	2 cut(s)	257, 393
BshNI	GGYRCC	1 cut(s)	656
BsiHKAI	GWGCWC	2 cut(s)	26, 87
BslFI	GGGAC	3 cut(s)	456, 737, 743
BslI	CCNNNNNNNGG	3 cut(s)	107, 108, 380
BsmAI	GTCTC	2 cut(s)	773, 800
BsmBI	CGTCTC	1 cut(s)	800
BsmFI	GGGAC	3 cut(s)	456, 737, 743
Bsp1286I	GDGCHC	2 cut(s)	26, 87
Bsp143I	GATC	5 cut(s)	89, 250, 496, 520, 574
BspACI	CCGC	4 cut(s)	16, 102, 290, 789
BspFNI	CGCG	2 cut(s)	257, 393
BspLI	GGNNCC	4 cut(s)	148, 336, 444, 658
BspMAI	CTGCAG	1 cut(s)	838
BspMI	ACCTGC	2 cut(s)	382, 834
BspPI	GGATC	2 cut(s)	84, 491
BspT107I	GGYRCC	1 cut(s)	656
BsrDI	GCAATG	1 cut(s)	585
BsrI	ACTGG	4 cut(s)	93, 420, 787, 823
BssECI	CCNNGG	2 cut(s)	127, 378
BssMI	GATC	5 cut(s)	89, 250, 496, 520, 574
BssT1I	CCWWGG	2 cut(s)	127, 378
Bst4CI	ACNGT	1 cut(s)	734
Bst6I	CTCTTC	1 cut(s)	126
BstDEI	CTNAG	1 cut(s)	717
BstFNI	CGCG	2 cut(s)	257, 393
BstHHI	GCGC	1 cut(s)	395
BstKTI	GATC	5 cut(s)	92, 253, 499, 523, 577
BstMAI	GTCTC	2 cut(s)	773, 800
BstMBI	GATC	5 cut(s)	89, 250, 496, 520, 574
BstMWI	GCNNNNNNNGC	1 cut(s)	15
BstSFI	CTRYAG	1 cut(s)	834
BstUI	CGCG	2 cut(s)	257, 393
BstV1I	GCAGC	2 cut(s)	99, 820
BstV2I	GAAGAC	2 cut(s)	376, 832
BveI	ACCTGC	2 cut(s)	382, 834
CaiI	CAGNNNCTG	1 cut(s)	849
CfoI	GCGC	1 cut(s)	395
Cfr13I	GGNCC	3 cut(s)	146, 443, 846
CspCI	CAANNNNNGTGG	2 cut(s)	330, 365
CviAII	CATG	1 cut(s)	672
CviJI	RGCY	9 cut(s)	55, 85, 112, 158, 186, 509, 683, 764, 833
CviKI_1	RGCY	9 cut(s)	55, 85, 112, 158, 186, 509, 683, 764, 833
DdeI	CTNAG	1 cut(s)	717
DpnI	GATC	5 cut(s)	91, 252, 498, 522, 576
DpnII	GATC	5 cut(s)	89, 250, 496, 520, 574
Eam1104I	CTCTTC	1 cut(s)	126
EarI	CTCTTC	1 cut(s)	126
Ecl136II	GAGCTC	1 cut(s)	85
Eco130I	CCWWGG	2 cut(s)	127, 378
Eco24I	GRGCYC	1 cut(s)	87
Eco47I	GGWCC	3 cut(s)	146, 443, 846
Eco53kI	GAGCTC	1 cut(s)	85
Eco57I	CTGAAG	1 cut(s)	531
EcoICRI	GAGCTC	1 cut(s)	85
EcoO109I	RGGNCCY	1 cut(s)	846
EcoRI	GAATTC	1 cut(s)	692
EcoT14I	CCWWGG	2 cut(s)	127, 378
EcoT22I	ATGCAT	1 cut(s)	706
EcoT38I	GRGCYC	1 cut(s)	87
ErhI	CCWWGG	2 cut(s)	127, 378
Esp3I	CGTCTC	1 cut(s)	800
FaeI	CATG	1 cut(s)	675
FaiI	YATR	3 cut(s)	302, 673, 759
FaqI	GGGAC	3 cut(s)	456, 737, 743
FatI	CATG	1 cut(s)	671
FauI	CCCGC	2 cut(s)	23, 109
FbaI	TGATCA	1 cut(s)	520
FblI	GTMKAC	1 cut(s)	97
Fnu4HI	GCNGC	2 cut(s)	113, 834
FriOI	GRGCYC	1 cut(s)	87
Fsp4HI	GCNGC	2 cut(s)	113, 834
GlaI	GCGC	1 cut(s)	394
GluI	GCNGC	2 cut(s)	113, 834
GsuI	CTGGAG	1 cut(s)	804
HhaI	GCGC	1 cut(s)	395
Hin1II	CATG	1 cut(s)	675
Hin6I	GCGC	1 cut(s)	393
HinP1I	GCGC	1 cut(s)	393
HincII	GTYRAC	2 cut(s)	98, 425
HindII	GTYRAC	2 cut(s)	98, 425
HinfI	GANTC	2 cut(s)	11, 77
HphI	GGTGA	4 cut(s)	350, 544, 615, 653
Hpy166II	GTNNAC	3 cut(s)	98, 352, 425
Hpy188I	TCNGA	7 cut(s)	82, 89, 146, 298, 574, 579, 610
Hpy188III	TCNNGA	2 cut(s)	215, 849
Hpy8I	GTNNAC	3 cut(s)	98, 352, 425
Hpy99I	CGWCG	1 cut(s)	146
HpyAV	CCTTC	3 cut(s)	160, 552, 647
HpyCH4III	ACNGT	1 cut(s)	734
HpyCH4IV	ACGT	3 cut(s)	449, 614, 809
HpyCH4V	TGCA	5 cut(s)	115, 341, 590, 704, 836
HpyF10VI	GCNNNNNNNGC	1 cut(s)	15
HpyF3I	CTNAG	1 cut(s)	717
HpySE526I	ACGT	3 cut(s)	449, 614, 809
Hsp92II	CATG	1 cut(s)	675
HspAI	GCGC	1 cut(s)	393
Ksp22I	TGATCA	1 cut(s)	520
Kzo9I	GATC	5 cut(s)	89, 250, 496, 520, 574
LmnI	GCTCC	2 cut(s)	82, 90
Lsp1109I	GCAGC	2 cut(s)	99, 820
LweI	GCATC	1 cut(s)	713
MaeII	ACGT	3 cut(s)	449, 614, 809
MaeIII	GTNAC	5 cut(s)	303, 532, 621, 641, 796
MalI	GATC	5 cut(s)	91, 252, 498, 522, 576
MboI	GATC	5 cut(s)	89, 250, 496, 520, 574
MboII	GAAGA	5 cut(s)	113, 271, 381, 537, 837
MhlI	GDGCHC	2 cut(s)	26, 87
MluCI	AATT	8 cut(s)	47, 193, 209, 415, 436, 483, 630, 692
MlyI	GAGTC	2 cut(s)	5, 86
MmeI	TCCRAC	2 cut(s)	60, 124
MnlI	CCTC	8 cut(s)	189, 241, 358, 670, 714, 766, 769, 779
Mph1103I	ATGCAT	1 cut(s)	706
MseI	TTAA	9 cut(s)	246, 269, 387, 435, 629, 633, 687, 737, 812
MslI	CAYNNNNRTG	1 cut(s)	316
MvnI	CGCG	2 cut(s)	257, 393
MwoI	GCNNNNNNNGC	1 cut(s)	15
NdeII	GATC	5 cut(s)	89, 250, 496, 520, 574
NlaIII	CATG	1 cut(s)	675
NlaIV	GGNNCC	4 cut(s)	148, 336, 444, 658
NmuCI	GTSAC	4 cut(s)	303, 532, 621, 641
NsiI	ATGCAT	1 cut(s)	706
PacI	TTAATTAA	1 cut(s)	633
PcsI	WCGNNNNNNNCGW	1 cut(s)	806
PkrI	GCNGC	2 cut(s)	114, 835
PleI	GAGTC	2 cut(s)	5, 85
PpsI	GAGTC	2 cut(s)	5, 85
PpuMI	RGGWCCY	1 cut(s)	846
PshBI	ATTAAT	1 cut(s)	435
Psp124BI	GAGCTC	1 cut(s)	87
Psp1406I	AACGTT	1 cut(s)	449
Psp5II	RGGWCCY	1 cut(s)	846
PspN4I	GGNNCC	4 cut(s)	148, 336, 444, 658
PspPI	GGNCC	3 cut(s)	146, 443, 846
PspPPI	RGGWCCY	1 cut(s)	846
PstI	CTGCAG	1 cut(s)	838
PstNI	CAGNNNCTG	1 cut(s)	849
RseI	CAYNNNNRTG	1 cut(s)	316
SacI	GAGCTC	1 cut(s)	87
SalI	GTCGAC	1 cut(s)	96
SaqAI	TTAA	9 cut(s)	246, 269, 387, 435, 629, 633, 687, 737, 812
SatI	GCNGC	2 cut(s)	113, 834
Sau3AI	GATC	5 cut(s)	89, 250, 496, 520, 574
Sau96I	GGNCC	3 cut(s)	146, 443, 846
SchI	GAGTC	2 cut(s)	5, 86
SduI	GDGCHC	2 cut(s)	26, 87
SfaNI	GCATC	1 cut(s)	713
SfcI	CTRYAG	1 cut(s)	834
SinI	GGWCC	3 cut(s)	146, 443, 846
SmiMI	CAYNNNNRTG	1 cut(s)	316
Sse9I	AATT	8 cut(s)	47, 193, 209, 415, 436, 483, 630, 692
SsiI	CCGC	4 cut(s)	16, 102, 290, 789
SstI	GAGCTC	1 cut(s)	87
StyI	CCWWGG	2 cut(s)	127, 378
TaaI	ACNGT	1 cut(s)	734
TaiI	ACGT	3 cut(s)	452, 617, 812
TaqI	TCGA	4 cut(s)	97, 169, 453, 707
TasI	AATT	8 cut(s)	47, 193, 209, 415, 436, 483, 630, 692
Tru1I	TTAA	9 cut(s)	246, 269, 387, 435, 629, 633, 687, 737, 812
Tru9I	TTAA	9 cut(s)	246, 269, 387, 435, 629, 633, 687, 737, 812
TseFI	GTSAC	4 cut(s)	303, 532, 621, 641
TseI	GCWGC	2 cut(s)	112, 833
Tsp45I	GTSAC	4 cut(s)	303, 532, 621, 641
TspDTI	ATGAA	2 cut(s)	660, 774
TspGWI	ACGGA	2 cut(s)	342, 785
VpaK11BI	GGWCC	3 cut(s)	146, 443, 846
VspI	ATTAAT	1 cut(s)	435
XapI	RAATTY	2 cut(s)	209, 692
XmiI	GTMKAC	1 cut(s)	97
Zsp2I	ATGCAT	1 cut(s)	706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.