Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003629

Physical Location & Seq

Genomic Coordinates Forward (+)

42683552 .. 42687292

Gene Structure 3741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0342800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGAAGCAGAGGACGAGTACAGAAGGAAGGCCCGCGTGGCATTGGTGGTCATTGTGGTCCTCGCTTCCCTCGCCGTCGCTTCATTACTCGTCGCCTTTAGCTACTACTGCTACATCCGCAACAAGGTAGCCAAGCACCTCAACAACAACAACAAGGGGGCTGACTTGGAGGCCAAAGGTGGTTTTCCAAATCCGAAAACAGCTGCCAGTGACGGAGTTCAGGTCTTCACGTTTAAGCAACTACATTCGGCGACTGGGGGTTTCAGCAAATCGAATGTGGTTGGGAAAGGCGGATTCGGGTTGGTGTACCGTGGGGTGCTGCATAATGGGAGGAAAGTTGCAATTAAGTTTATGGACCAAGCAGGAAAGCAGGGAGAAGAAGAGTTTGAAATGGAGGTGGAGTTGCTAAGTCGGTTGCGTTCTCCATATTTGCTTTCGTTGCTTGGGTATTGTTCAGATAACAGTCGTAAGCTGTTGGTGTATGAGTTTATGGCAAATGGTGGATTGCAGGAACATTTGTATCCTGTCAGTGGTGGTCCTAATGCCCTCTCCACAAACTTAGACTGGGAAACCCGGTTGAGAATAGCTCTTGAAGCTGCGAAAGGTTTGGAGTATCTCCATGAACAAGTTAGTCCTCCAGTGATACACAGAGATTTTAAGAGCAGCAACATTCTCTTGGACAAAACATTCCATGCCAAAGTTTCTGATTTCGGATTGGCCAAACTTGGATCTGACAAAGCTGGAGGTTATGTTTCCACCAGAGTGTTGGGCACACAGGGATATGTTGCCCCTGAGTATGCATTAACAGGGCATCTGACAACTAAATCAGATGTGTACAGTTATGGGGTTGTGCTGTTGGAATTGCTAACAGGCAGAGTTCCAGTTGATATGAAGAGATCCCCTGGAGAAGGTGTTCTCGTTTCTTGGGCTTTGCCGCATCTGACAGATAGGGAGCAGGTTGTACAGATCATGGATCCTGCATTGGAGGGTCAATACTCGATGAAGGAGGTCATTCAGGTGGCAGCAATTGCTGCTATGTGTGTGCAACCAGAGGCAGATTATAGGCCACTGATGGCAGATGTTGTACAGTCACTCGTTCCGCTCGTGAAGATTCACAGATCAACCTCGAAGGTAGGCAGATGTTCTAGTTTGCATGCAACAAAGTCACCTGCACAGAATTCGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000777 GO:0000778 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0000819 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006996 GO:0007049 GO:0007059 GO:0007080 GO:0007127 GO:0008150 GO:0008608 GO:0009987 GO:0016043 GO:0019237 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0032991 GO:0034508 GO:0034622 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0048285 GO:0050000 GO:0051179 GO:0051234 GO:0051276 GO:0051303 GO:0051310 GO:0051315 GO:0051316 GO:0051321 GO:0051382 GO:0051383 GO:0051455 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0061982 GO:0065003 GO:0065004 GO:0070013 GO:0070925 GO:0071824 GO:0071840 GO:0097159 GO:0098687 GO:0098813 GO:0140013 GO:0140014 GO:1901363 GO:1903046 GO:1903047 GO:1990837

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

395

Amino Acids

43.09

Weight (kDa)

8.8

Isoelectric Point (pI)

31.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	89 - 298	1.8e-42	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	91 - 365	8.2e-45	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15660
fragaria_vesca	FvH4_6g30920 FvH4_6g30920 FvH4_6g30920 FvH4_6g30920 FvH4_6g30920 FvH4_6g30920 FvH4_6g30920 FvH4_6g30920 FvH4_6g30920
malus_domestica	MD09G1215000.v1.1 MD17G1197700.v1.1
prunus_persica	Prupe.3G073700_v2.0.a1 Prupe.3G073700_v2.0.a1 Prupe.3G073700_v2.0.a1 Prupe.3G073700_v2.0.a1 Prupe.3G073700_v2.0.a1
pyrus_communis	pycom09g13190 pycom17g20260
rosa_chinensis	RchiOBHm_Chr2g0137511
rosa_laevigata	RLG00000019658 RLG00000019659
rosa_multiflora	Rmu_sc0000765.1_g000007
rosa_roxburghii	Rroxscaffold_2G00107040
rosa_rugosa	Rorug02G0342700 Rorug02G0342800 Rorug02G0342900 Rorug02G0343000 Rorug02G0343000 Rorug02G0343000
rosa_samantha	Rh2AG390600 Rh2BG398300 Rh2CG377800 Rh2DG413300
rosa_wichuraiana	Rw2G032000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1177
Acc36I	ACCTGC	2 cut(s)	946, 1177
AccBSI	CCGCTC	1 cut(s)	1102
AccII	CGCG	1 cut(s)	36
AciI	CCGC	5 cut(s)	34, 118, 291, 935, 1100
AclWI	GGATC	4 cut(s)	736, 891, 968, 981
AcoI	YGGCCR	1 cut(s)	717
AcsI	RAATTY	1 cut(s)	1177
AfaI	GTAC	5 cut(s)	20, 308, 836, 963, 1086
AfiI	CCNNNNNNNGG	3 cut(s)	124, 530, 908
AgsI	TTSAA	2 cut(s)	389, 593
AjnI	CCWGG	1 cut(s)	901
AleI	CACNNNNGTG	1 cut(s)	761
AloI	GAACNNNNNNTCC	2 cut(s)	897, 929
AluBI	AGCT	6 cut(s)	102, 203, 472, 587, 596, 740
AluI	AGCT	6 cut(s)	102, 203, 472, 587, 596, 740
AlwI	GGATC	4 cut(s)	736, 891, 968, 981
AoxI	GGCC	4 cut(s)	30, 171, 717, 1064
ApeKI	GCWGC	6 cut(s)	203, 319, 596, 663, 1022, 1031
ApoI	RAATTY	1 cut(s)	1177
Asp700I	GAANNNNTTC	1 cut(s)	912
AspS9I	GGNCC	4 cut(s)	31, 58, 355, 536
AsuC2I	CCSGG	1 cut(s)	574
AsuHPI	GGTGA	1 cut(s)	1158
AvaII	GGWCC	3 cut(s)	58, 355, 536
BaeGI	GKGCMC	1 cut(s)	773
BaeI	ACNNNNGTAYC	2 cut(s)	503, 536
BalI	TGGCCA	1 cut(s)	719
BamHI	GGATCC	1 cut(s)	973
BauI	CACGAG	1 cut(s)	1103
BbsI	GAAGAC	1 cut(s)	217
BbvI	GCAGC	6 cut(s)	190, 306, 583, 675, 1018, 1034
BccI	CCATC	1 cut(s)	1066
BceAI	ACGGC	1 cut(s)	59
BcgI	CGANNNNNNTGC	1 cut(s)	1161
BciT130I	CCWGG	1 cut(s)	903
BciVI	GTATCC	1 cut(s)	531
BcnI	CCSGG	1 cut(s)	574
BfaI	CTAG	1 cut(s)	1146
BfuAI	ACCTGC	2 cut(s)	946, 1177
BfuI	GTATCC	1 cut(s)	531
BglI	GCCNNNNNGGC	1 cut(s)	38
BisI	GCNGC	7 cut(s)	204, 320, 597, 664, 935, 1023, 1032
BlsI	GCNGC	7 cut(s)	205, 321, 598, 665, 936, 1024, 1033
Bme1390I	CCNGG	2 cut(s)	574, 903
Bme18I	GGWCC	3 cut(s)	58, 355, 536
BmgT120I	GGNCC	4 cut(s)	31, 58, 355, 536
BmiI	GGNNCC	1 cut(s)	975
BmrFI	CCNGG	2 cut(s)	574, 903
BmrI	ACTGGG	2 cut(s)	264, 574
BmsI	GCATC	2 cut(s)	820, 946
BmuI	ACTGGG	2 cut(s)	264, 574
BpiI	GAAGAC	1 cut(s)	217
BplI	GAGNNNNNCTC	2 cut(s)	571, 603
BpmI	CTGGAG	3 cut(s)	621, 762, 924
BpuMI	CCSGG	1 cut(s)	574
BsaJI	CCNNGG	2 cut(s)	310, 901
BsaXI	ACNNNNNCTCC	8 cut(s)	207, 237, 386, 416, 735, 765, 897, 927
Bsc4I	CCNNNNNNNGG	3 cut(s)	124, 530, 908
Bse1I	ACTGG	5 cut(s)	207, 259, 569, 638, 881
BseBI	CCWGG	1 cut(s)	903
BseDI	CCNNGG	2 cut(s)	310, 901
BseGI	GGATG	1 cut(s)	114
BseLI	CCNNNNNNNGG	3 cut(s)	124, 530, 908
BseMII	CTCAG	1 cut(s)	783
BseNI	ACTGG	5 cut(s)	207, 259, 569, 638, 881
BseSI	GKGCMC	1 cut(s)	773
BseXI	GCAGC	6 cut(s)	190, 306, 583, 675, 1018, 1034
BsgI	GTGCAG	1 cut(s)	1155
Bsh1236I	CGCG	1 cut(s)	36
BshFI	GGCC	4 cut(s)	32, 173, 719, 1066
BsiSI	CCGG	1 cut(s)	574
BslI	CCNNNNNNNGG	3 cut(s)	124, 530, 908
BsnI	GGCC	4 cut(s)	32, 173, 719, 1066
Bsp1286I	GDGCHC	1 cut(s)	773
Bsp1407I	TGTACA	3 cut(s)	834, 961, 1084
Bsp143I	GATC	5 cut(s)	728, 896, 966, 973, 1118
BspACI	CCGC	5 cut(s)	34, 118, 291, 935, 1100
BspANI	GGCC	4 cut(s)	32, 173, 719, 1066
BspCNI	CTCAG	1 cut(s)	784
BspFNI	CGCG	1 cut(s)	36
BspLI	GGNNCC	1 cut(s)	975
BspMI	ACCTGC	2 cut(s)	946, 1177
BspPI	GGATC	4 cut(s)	736, 891, 968, 981
BsrBI	CCGCTC	1 cut(s)	1102
BsrGI	TGTACA	3 cut(s)	834, 961, 1084
BsrI	ACTGG	5 cut(s)	207, 259, 569, 638, 881
BssECI	CCNNGG	2 cut(s)	310, 901
BssMI	GATC	5 cut(s)	728, 896, 966, 973, 1118
BssSI	CACGAG	1 cut(s)	1103
Bst2BI	CACGAG	1 cut(s)	1103
Bst2UI	CCWGG	1 cut(s)	903
Bst4CI	ACNGT	4 cut(s)	311, 464, 839, 1089
Bst6I	CTCTTC	2 cut(s)	375, 887
BstAPI	GCANNNNNTGC	2 cut(s)	1028, 1031
BstAUI	TGTACA	3 cut(s)	834, 961, 1084
BstC8I	GCNNGC	2 cut(s)	34, 1155
BstDEI	CTNAG	3 cut(s)	407, 559, 792
BstDSI	CCRYGG	1 cut(s)	310
BstENI	CCTNNNNNAGG	1 cut(s)	906
BstF5I	GGATG	1 cut(s)	114
BstFNI	CGCG	1 cut(s)	36
BstKTI	GATC	5 cut(s)	731, 899, 969, 976, 1121
BstMBI	GATC	5 cut(s)	728, 896, 966, 973, 1118
BstMWI	GCNNNNNNNGC	8 cut(s)	38, 71, 108, 117, 439, 593, 1028, 1031
BstNI	CCWGG	1 cut(s)	903
BstNSI	RCATGY	1 cut(s)	1157
BstSCI	CCNGG	2 cut(s)	572, 901
BstSLI	GKGCMC	1 cut(s)	773
BstUI	CGCG	1 cut(s)	36
BstV1I	GCAGC	6 cut(s)	190, 306, 583, 675, 1018, 1034
BstV2I	GAAGAC	1 cut(s)	217
BstX2I	RGATCY	3 cut(s)	728, 896, 973
BstXI	CCANNNNNNTGG	1 cut(s)	766
BstYI	RGATCY	3 cut(s)	728, 896, 973
BsuI	GTATCC	1 cut(s)	531
BsuRI	GGCC	4 cut(s)	32, 173, 719, 1066
BtgI	CCRYGG	1 cut(s)	310
BtsCI	GGATG	1 cut(s)	114
BtsIMutI	CAGTG	4 cut(s)	214, 535, 645, 1067
BveI	ACCTGC	2 cut(s)	946, 1177
Cac8I	GCNNGC	2 cut(s)	34, 1155
Cfr13I	GGNCC	4 cut(s)	31, 58, 355, 536
Csp6I	GTAC	5 cut(s)	19, 307, 835, 962, 1085
CviAII	CATG	4 cut(s)	620, 692, 970, 1154
CviQI	GTAC	5 cut(s)	19, 307, 835, 962, 1085
DdeI	CTNAG	3 cut(s)	407, 559, 792
DpnI	GATC	5 cut(s)	730, 898, 968, 975, 1120
DpnII	GATC	5 cut(s)	728, 896, 966, 973, 1118
EaeI	YGGCCR	1 cut(s)	717
Eam1104I	CTCTTC	2 cut(s)	375, 887
EarI	CTCTTC	2 cut(s)	375, 887
EciI	GGCGGA	1 cut(s)	306
Eco47I	GGWCC	3 cut(s)	58, 355, 536
EcoNI	CCTNNNNNAGG	1 cut(s)	906
EcoRI	GAATTC	1 cut(s)	1177
EcoRII	CCWGG	1 cut(s)	901
EcoT22I	ATGCAT	1 cut(s)	802
FaeI	CATG	4 cut(s)	623, 695, 973, 1157
FatI	CATG	4 cut(s)	619, 691, 969, 1153
FauI	CCCGC	1 cut(s)	41
Fnu4HI	GCNGC	7 cut(s)	204, 320, 597, 664, 935, 1023, 1032
FokI	GGATG	1 cut(s)	101
Fsp4HI	GCNGC	7 cut(s)	204, 320, 597, 664, 935, 1023, 1032
FspBI	CTAG	1 cut(s)	1146
GluI	GCNGC	7 cut(s)	204, 320, 597, 664, 935, 1023, 1032
GsuI	CTGGAG	3 cut(s)	621, 762, 924
HaeIII	GGCC	4 cut(s)	32, 173, 719, 1066
HapII	CCGG	1 cut(s)	574
Hin1II	CATG	4 cut(s)	623, 695, 973, 1157
HinfI	GANTC	2 cut(s)	294, 1111
HpaII	CCGG	1 cut(s)	574
HphI	GGTGA	1 cut(s)	1158
Hpy166II	GTNNAC	2 cut(s)	307, 835
Hpy188I	TCNGA	8 cut(s)	195, 457, 706, 713, 733, 816, 829, 942
Hpy188III	TCNNGA	2 cut(s)	590, 1105
Hpy8I	GTNNAC	2 cut(s)	307, 835
Hpy99I	CGWCG	2 cut(s)	80, 95
HpyAV	CCTTC	5 cut(s)	18, 22, 902, 997, 1123
HpyCH4III	ACNGT	4 cut(s)	311, 464, 839, 1089
HpyCH4IV	ACGT	1 cut(s)	230
HpyCH4V	TGCA	9 cut(s)	322, 341, 508, 800, 980, 1045, 1153, 1157, 1172
HpyF10VI	GCNNNNNNNGC	8 cut(s)	38, 71, 108, 117, 439, 593, 1028, 1031
HpyF3I	CTNAG	3 cut(s)	407, 559, 792
HpySE526I	ACGT	1 cut(s)	230
Hsp92II	CATG	4 cut(s)	623, 695, 973, 1157
Kzo9I	GATC	5 cut(s)	728, 896, 966, 973, 1118
LmnI	GCTCC	1 cut(s)	952
Lsp1109I	GCAGC	6 cut(s)	190, 306, 583, 675, 1018, 1034
LweI	GCATC	2 cut(s)	820, 946
MaeI	CTAG	1 cut(s)	1146
MaeII	ACGT	1 cut(s)	230
MaeIII	GTNAC	3 cut(s)	209, 1089, 1164
MalI	GATC	5 cut(s)	730, 898, 968, 975, 1120
MbiI	CCGCTC	1 cut(s)	1102
MboI	GATC	5 cut(s)	728, 896, 966, 973, 1118
MboII	GAAGA	5 cut(s)	217, 389, 392, 904, 1120
MfeI	CAATTG	1 cut(s)	1026
MflI	RGATCY	3 cut(s)	728, 896, 973
MhlI	GDGCHC	1 cut(s)	773
MlsI	TGGCCA	1 cut(s)	719
MluCI	AATT	4 cut(s)	342, 860, 1026, 1177
MluNI	TGGCCA	1 cut(s)	719
MmeI	TCCRAC	1 cut(s)	837
Mox20I	TGGCCA	1 cut(s)	719
Mph1103I	ATGCAT	1 cut(s)	802
MroXI	GAANNNNTTC	1 cut(s)	912
MscI	TGGCCA	1 cut(s)	719
MseI	TTAA	5 cut(s)	234, 345, 657, 803, 1186
MslI	CAYNNNNRTG	2 cut(s)	761, 1016
Msp20I	TGGCCA	1 cut(s)	719
MspA1I	CMGCKG	1 cut(s)	203
MspI	CCGG	1 cut(s)	574
MspR9I	CCNGG	2 cut(s)	574, 903
MunI	CAATTG	1 cut(s)	1026
MvaI	CCWGG	1 cut(s)	903
MvnI	CGCG	1 cut(s)	36
MwoI	GCNNNNNNNGC	8 cut(s)	38, 71, 108, 117, 439, 593, 1028, 1031
NciI	CCSGG	1 cut(s)	574
NdeII	GATC	5 cut(s)	728, 896, 966, 973, 1118
NlaIII	CATG	4 cut(s)	623, 695, 973, 1157
NlaIV	GGNNCC	1 cut(s)	975
NmuCI	GTSAC	3 cut(s)	209, 1089, 1164
NsiI	ATGCAT	1 cut(s)	802
NspI	RCATGY	1 cut(s)	1157
OliI	CACNNNNGTG	1 cut(s)	761
PaeI	GCATGC	1 cut(s)	1157
PaqCI	CACCTGC	1 cut(s)	1177
PcsI	WCGNNNNNNNCGW	1 cut(s)	1101
PdmI	GAANNNNTTC	1 cut(s)	912
PfeI	GAWTC	2 cut(s)	294, 1111
PkrI	GCNGC	7 cut(s)	205, 321, 598, 665, 936, 1024, 1033
Psp6I	CCWGG	1 cut(s)	901
PspGI	CCWGG	1 cut(s)	901
PspN4I	GGNNCC	1 cut(s)	975
PspPI	GGNCC	4 cut(s)	31, 58, 355, 536
PsuI	RGATCY	3 cut(s)	728, 896, 973
PvuII	CAGCTG	1 cut(s)	203
RsaI	GTAC	5 cut(s)	20, 308, 836, 963, 1086
RsaNI	GTAC	5 cut(s)	19, 307, 835, 962, 1085
RseI	CAYNNNNRTG	2 cut(s)	761, 1016
SaqAI	TTAA	5 cut(s)	234, 345, 657, 803, 1186
SatI	GCNGC	7 cut(s)	204, 320, 597, 664, 935, 1023, 1032
Sau3AI	GATC	5 cut(s)	728, 896, 966, 973, 1118
Sau96I	GGNCC	4 cut(s)	31, 58, 355, 536
ScrFI	CCNGG	2 cut(s)	574, 903
SduI	GDGCHC	1 cut(s)	773
SfaNI	GCATC	2 cut(s)	820, 946
SinI	GGWCC	3 cut(s)	58, 355, 536
SmiMI	CAYNNNNRTG	2 cut(s)	761, 1016
SphI	GCATGC	1 cut(s)	1157
Sse9I	AATT	4 cut(s)	342, 860, 1026, 1177
SsiI	CCGC	5 cut(s)	34, 118, 291, 935, 1100
SspMI	CTAG	1 cut(s)	1146
StyD4I	CCNGG	2 cut(s)	572, 901
TaaI	ACNGT	4 cut(s)	311, 464, 839, 1089
TaiI	ACGT	1 cut(s)	233
TaqI	TCGA	3 cut(s)	272, 998, 1127
TasI	AATT	4 cut(s)	342, 860, 1026, 1177
TatI	WGTACW	4 cut(s)	18, 834, 961, 1084
TauI	GCSGC	1 cut(s)	937
TfiI	GAWTC	2 cut(s)	294, 1111
Tru1I	TTAA	5 cut(s)	234, 345, 657, 803, 1186
Tru9I	TTAA	5 cut(s)	234, 345, 657, 803, 1186
TscAI	CASTG	4 cut(s)	214, 535, 645, 1074
TseFI	GTSAC	3 cut(s)	209, 1089, 1164
TseI	GCWGC	6 cut(s)	203, 319, 596, 663, 1022, 1031
Tsp45I	GTSAC	3 cut(s)	209, 1089, 1164
TspDTI	ATGAA	4 cut(s)	72, 636, 905, 1016
TspGWI	ACGGA	1 cut(s)	228
TspRI	CASTG	4 cut(s)	214, 535, 645, 1074
VpaK11BI	GGWCC	3 cut(s)	58, 355, 536
XagI	CCTNNNNNAGG	1 cut(s)	906
XapI	RAATTY	1 cut(s)	1177
XceI	RCATGY	1 cut(s)	1157
XcmI	CCANNNNNNNNNTGG	1 cut(s)	763
XmnI	GAANNNNTTC	1 cut(s)	912
XspI	CTAG	1 cut(s)	1146
Zsp2I	ATGCAT	1 cut(s)	802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.