Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003629

Physical Location & Seq

Genomic Coordinates Reverse (-)

42679661 .. 42680417

Gene Structure 757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0342700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGTTCACTCATATTTCATTCATGTTGTGGAATATATGGAAGCATCGATGTTCTTCTGTGTTCAATTTTTCTCCTCCAGACCCGGTGTCAACTGCAAACAAGGCCTTCATGCAAGCTGAAGAATTCCTTTTGGCTCGTCACATGGCCCCTTCAGTTCGACAGCATGCTCCGGTTGTTCATAACTCTGTTCCACAGACATGGTTTCCTCCTGCTCTTGGTTCTCTAAAAATTAATACAGATGCAACTTGGAACTCTGAGTCTTTGTGTTGTGGTCTTGCTGCGCTTCTCAGAGATTCTTCAGGTACTTTTCTCAATGGTGTGGTCTCAGTGGGGAAGGCTACCTCGGCGGAGGCTCAAGCGGTTCTTCTTGGCCTCAATTTGGCAAAAACTGAGTCCATTCTTTCTTTCTCTCATGAAGCTGATTGTCTCCCCTTAATCTCAGCTTTGAAATCCTCTTTGGGATCGGTCTCTTGGTCTACACTCACTTGGTTTCAACAGCTCATGTCTTTGGCTGATTCTTTCTCTTCTGTAAACTGGTCTTGGATCAGTAGGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000777 GO:0000778 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0000819 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006996 GO:0007049 GO:0007059 GO:0007080 GO:0007127 GO:0008150 GO:0008608 GO:0009987 GO:0016043 GO:0019237 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0032991 GO:0034508 GO:0034622 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0048285 GO:0050000 GO:0051179 GO:0051234 GO:0051276 GO:0051303 GO:0051310 GO:0051315 GO:0051316 GO:0051321 GO:0051382 GO:0051383 GO:0051455 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0061982 GO:0065003 GO:0065004 GO:0070013 GO:0070925 GO:0071824 GO:0071840 GO:0097159 GO:0098687 GO:0098813 GO:0140013 GO:0140014 GO:1901363 GO:1903046 GO:1903047 GO:1990837

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

185

Amino Acids

20.28

Weight (kDa)

6.57

Isoelectric Point (pI)

48.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	78 - 185	8e-13	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15660
fragaria_vesca	FvH4_6g30920 FvH4_6g30920 FvH4_6g30920 FvH4_6g30920 FvH4_6g30920 FvH4_6g30920 FvH4_6g30920 FvH4_6g30920 FvH4_6g30920
malus_domestica	MD09G1215000.v1.1 MD17G1197700.v1.1
prunus_persica	Prupe.3G073700_v2.0.a1 Prupe.3G073700_v2.0.a1 Prupe.3G073700_v2.0.a1 Prupe.3G073700_v2.0.a1 Prupe.3G073700_v2.0.a1
pyrus_communis	pycom09g13190 pycom17g20260
rosa_chinensis	RchiOBHm_Chr2g0137511
rosa_laevigata	RLG00000019658 RLG00000019659
rosa_multiflora	Rmu_sc0000765.1_g000007
rosa_roxburghii	Rroxscaffold_2G00107040
rosa_rugosa	Rorug02G0342700 Rorug02G0342800 Rorug02G0342900 Rorug02G0343000 Rorug02G0343000 Rorug02G0343000
rosa_samantha	Rh2AG390600 Rh2BG398300 Rh2CG377800 Rh2DG413300
rosa_wichuraiana	Rw2G032000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	476
AciI	CCGC	2 cut(s)	347, 359
AclWI	GGATC	2 cut(s)	469, 551
AcsI	RAATTY	1 cut(s)	122
AcuI	CTGAAG	3 cut(s)	135, 138, 282
AfaI	GTAC	1 cut(s)	304
AfiI	CCNNNNNNNGG	2 cut(s)	215, 379
AgsI	TTSAA	3 cut(s)	64, 448, 494
AhdI	GACNNNNNGTC	1 cut(s)	85
AjuI	GAANNNNNNNTTGG	2 cut(s)	440, 472
AluBI	AGCT	4 cut(s)	116, 419, 443, 499
AluI	AGCT	4 cut(s)	116, 419, 443, 499
Alw26I	GTCTC	3 cut(s)	328, 431, 472
AlwI	GGATC	2 cut(s)	469, 551
AoxI	GGCC	3 cut(s)	102, 144, 370
ApeKI	GCWGC	1 cut(s)	278
ApoI	RAATTY	1 cut(s)	122
ArsI	GACNNNNNNTTYG	2 cut(s)	377, 409
AseI	ATTAAT	1 cut(s)	231
AspLEI	GCGC	1 cut(s)	283
AspS9I	GGNCC	1 cut(s)	145
AsuC2I	CCSGG	1 cut(s)	83
BbvI	GCAGC	1 cut(s)	265
BcnI	CCSGG	1 cut(s)	83
BcoDI	GTCTC	3 cut(s)	328, 431, 472
BisI	GCNGC	1 cut(s)	279
BlsI	GCNGC	1 cut(s)	280
Bme1390I	CCNGG	1 cut(s)	83
BmeRI	GACNNNNNGTC	1 cut(s)	85
BmgT120I	GGNCC	1 cut(s)	145
BmiI	GGNNCC	1 cut(s)	147
BmrFI	CCNGG	1 cut(s)	83
BmsI	GCATC	2 cut(s)	52, 229
BpmI	CTGGAG	1 cut(s)	60
BpuEI	CTTGAG	1 cut(s)	339
BpuMI	CCSGG	1 cut(s)	83
Bsa29I	ATCGAT	1 cut(s)	46
BsaI	GGTCTC	2 cut(s)	328, 472
BsaJI	CCNNGG	1 cut(s)	342
BsaWI	WCCGGW	1 cut(s)	169
Bsc4I	CCNNNNNNNGG	2 cut(s)	215, 379
Bse1I	ACTGG	1 cut(s)	539
BseCI	ATCGAT	1 cut(s)	46
BseDI	CCNNGG	1 cut(s)	342
BseLI	CCNNNNNNNGG	2 cut(s)	215, 379
BseMII	CTCAG	5 cut(s)	246, 301, 339, 381, 453
BseNI	ACTGG	1 cut(s)	539
BseRI	GAGGAG	1 cut(s)	63
BseXI	GCAGC	1 cut(s)	265
BshFI	GGCC	3 cut(s)	104, 146, 372
BshVI	ATCGAT	1 cut(s)	46
BsiSI	CCGG	2 cut(s)	83, 170
BslI	CCNNNNNNNGG	2 cut(s)	215, 379
BsmAI	GTCTC	3 cut(s)	328, 431, 472
BsnI	GGCC	3 cut(s)	104, 146, 372
Bso31I	GGTCTC	2 cut(s)	328, 472
Bsp143I	GATC	2 cut(s)	461, 543
BspACI	CCGC	2 cut(s)	347, 359
BspANI	GGCC	3 cut(s)	104, 146, 372
BspCNI	CTCAG	5 cut(s)	247, 300, 338, 382, 452
BspDI	ATCGAT	1 cut(s)	46
BspHI	TCATGA	1 cut(s)	412
BspLI	GGNNCC	1 cut(s)	147
BspPI	GGATC	2 cut(s)	469, 551
BspTNI	GGTCTC	2 cut(s)	328, 472
BsrI	ACTGG	1 cut(s)	539
BssECI	CCNNGG	1 cut(s)	342
BssMI	GATC	2 cut(s)	461, 543
Bst6I	CTCTTC	1 cut(s)	529
BstC8I	GCNNGC	2 cut(s)	114, 165
BstDEI	CTNAG	5 cut(s)	255, 287, 325, 390, 439
BstHHI	GCGC	1 cut(s)	283
BstKTI	GATC	2 cut(s)	464, 546
BstMAI	GTCTC	3 cut(s)	328, 431, 472
BstMBI	GATC	2 cut(s)	461, 543
BstMWI	GCNNNNNNNGC	2 cut(s)	101, 344
BstNSI	RCATGY	1 cut(s)	167
BstSCI	CCNGG	1 cut(s)	81
BstV1I	GCAGC	1 cut(s)	265
BstXI	CCANNNNNNTGG	1 cut(s)	198
Bsu15I	ATCGAT	1 cut(s)	46
BsuRI	GGCC	3 cut(s)	104, 146, 372
BsuTUI	ATCGAT	1 cut(s)	46
BtsIMutI	CAGTG	1 cut(s)	333
Cac8I	GCNNGC	2 cut(s)	114, 165
CciI	TCATGA	1 cut(s)	412
CfoI	GCGC	1 cut(s)	283
Cfr13I	GGNCC	1 cut(s)	145
ClaI	ATCGAT	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	303
CviAII	CATG	7 cut(s)	22, 109, 142, 164, 198, 413, 502
CviQI	GTAC	1 cut(s)	303
DdeI	CTNAG	5 cut(s)	255, 287, 325, 390, 439
DpnI	GATC	2 cut(s)	463, 545
DpnII	GATC	2 cut(s)	461, 543
DriI	GACNNNNNGTC	1 cut(s)	85
Eam1104I	CTCTTC	1 cut(s)	529
Eam1105I	GACNNNNNGTC	1 cut(s)	85
EarI	CTCTTC	1 cut(s)	529
EciI	GGCGGA	1 cut(s)	362
Eco147I	AGGCCT	1 cut(s)	104
Eco31I	GGTCTC	2 cut(s)	328, 472
Eco57I	CTGAAG	3 cut(s)	135, 138, 282
EcoRI	GAATTC	1 cut(s)	122
FaeI	CATG	7 cut(s)	25, 112, 145, 167, 201, 416, 505
FalI	AAGNNNNNCTT	4 cut(s)	111, 143, 348, 380
FatI	CATG	7 cut(s)	21, 108, 141, 163, 197, 412, 501
FblI	GTMKAC	1 cut(s)	476
Fnu4HI	GCNGC	1 cut(s)	279
Fsp4HI	GCNGC	1 cut(s)	279
GlaI	GCGC	1 cut(s)	282
GluI	GCNGC	1 cut(s)	279
GsuI	CTGGAG	1 cut(s)	60
HaeIII	GGCC	3 cut(s)	104, 146, 372
HapII	CCGG	2 cut(s)	83, 170
HhaI	GCGC	1 cut(s)	283
Hin1II	CATG	7 cut(s)	25, 112, 145, 167, 201, 416, 505
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HincII	GTYRAC	1 cut(s)	90
HindII	GTYRAC	1 cut(s)	90
HinfI	GANTC	4 cut(s)	257, 293, 392, 515
HpaII	CCGG	2 cut(s)	83, 170
Hpy166II	GTNNAC	4 cut(s)	6, 90, 477, 532
Hpy188I	TCNGA	2 cut(s)	256, 290
Hpy188III	TCNNGA	2 cut(s)	77, 413
Hpy8I	GTNNAC	4 cut(s)	6, 90, 477, 532
HpyAV	CCTTC	3 cut(s)	115, 159, 328
HpyCH4V	TGCA	3 cut(s)	95, 112, 242
HpyF10VI	GCNNNNNNNGC	2 cut(s)	101, 344
HpyF3I	CTNAG	5 cut(s)	255, 287, 325, 390, 439
Hsp92II	CATG	7 cut(s)	25, 112, 145, 167, 201, 416, 505
HspAI	GCGC	1 cut(s)	281
Kzo9I	GATC	2 cut(s)	461, 543
LmnI	GCTCC	1 cut(s)	172
LpnPI	CCDG	6 cut(s)	90, 96, 183, 222, 285, 520
Lsp1109I	GCAGC	1 cut(s)	265
LweI	GCATC	2 cut(s)	52, 229
MaeIII	GTNAC	1 cut(s)	137
MalI	GATC	2 cut(s)	463, 545
MboI	GATC	2 cut(s)	461, 543
MboII	GAAGA	5 cut(s)	45, 131, 288, 356, 516
MluCI	AATT	4 cut(s)	64, 122, 228, 376
MlyI	GAGTC	2 cut(s)	266, 401
MnlI	CCTC	6 cut(s)	84, 216, 343, 352, 383, 463
MseI	TTAA	2 cut(s)	231, 434
MslI	CAYNNNNRTG	1 cut(s)	196
MspI	CCGG	2 cut(s)	83, 170
MspR9I	CCNGG	1 cut(s)	83
MwoI	GCNNNNNNNGC	2 cut(s)	101, 344
NciI	CCSGG	1 cut(s)	83
NdeII	GATC	2 cut(s)	461, 543
NlaIII	CATG	7 cut(s)	25, 112, 145, 167, 201, 416, 505
NlaIV	GGNNCC	1 cut(s)	147
NmeAIII	GCCGAG	1 cut(s)	323
NmuCI	GTSAC	1 cut(s)	137
NspI	RCATGY	1 cut(s)	167
PaeI	GCATGC	1 cut(s)	167
PagI	TCATGA	1 cut(s)	412
PceI	AGGCCT	1 cut(s)	104
PfeI	GAWTC	2 cut(s)	293, 515
PkrI	GCNGC	1 cut(s)	280
PleI	GAGTC	2 cut(s)	265, 400
PpsI	GAGTC	2 cut(s)	265, 400
PshBI	ATTAAT	1 cut(s)	231
PspN4I	GGNNCC	1 cut(s)	147
PspPI	GGNCC	1 cut(s)	145
RsaI	GTAC	1 cut(s)	304
RsaNI	GTAC	1 cut(s)	303
RseI	CAYNNNNRTG	1 cut(s)	196
SaqAI	TTAA	2 cut(s)	231, 434
SatI	GCNGC	1 cut(s)	279
Sau3AI	GATC	2 cut(s)	461, 543
Sau96I	GGNCC	1 cut(s)	145
SchI	GAGTC	2 cut(s)	266, 401
ScrFI	CCNGG	1 cut(s)	83
SetI	ASST	6 cut(s)	118, 304, 344, 421, 445, 501
SfaNI	GCATC	2 cut(s)	52, 229
SmiMI	CAYNNNNRTG	1 cut(s)	196
SmlI	CTYRAG	1 cut(s)	354
SmoI	CTYRAG	1 cut(s)	354
SphI	GCATGC	1 cut(s)	167
Sse9I	AATT	4 cut(s)	64, 122, 228, 376
SseBI	AGGCCT	1 cut(s)	104
SsiI	CCGC	2 cut(s)	347, 359
StuI	AGGCCT	1 cut(s)	104
StyD4I	CCNGG	1 cut(s)	81
TaqI	TCGA	2 cut(s)	46, 157
TaqII	GACCGA	1 cut(s)	454
TasI	AATT	4 cut(s)	64, 122, 228, 376
TfiI	GAWTC	2 cut(s)	293, 515
Tru1I	TTAA	2 cut(s)	231, 434
Tru9I	TTAA	2 cut(s)	231, 434
TscAI	CASTG	1 cut(s)	333
TseFI	GTSAC	1 cut(s)	137
TseI	GCWGC	1 cut(s)	278
Tsp45I	GTSAC	1 cut(s)	137
TspDTI	ATGAA	5 cut(s)	6, 10, 97, 167, 429
TspRI	CASTG	1 cut(s)	333
VspI	ATTAAT	1 cut(s)	231
XapI	RAATTY	1 cut(s)	122
XceI	RCATGY	1 cut(s)	167
XmiI	GTMKAC	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.