Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0003629

Physical Location & Seq

Genomic Coordinates Reverse (-)

11820717 .. 11822744

Gene Structure 2028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g13190.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1452 bp

ATGTTTGATGCATACAAGCACAATCCATCCCCAATTAAACGAAGCCGTCGACCATCGATTATGAGAAAGCGGGCTAAGCACAAGCATTCCTATCCGCTGATGGATTTTGAAAGTCGTGAGAATGGTAGTCCACTGAACCATTGCTCACAAGTAGAACCTAATGAAAATGTTACATGGGAGGAGATGGATTTAGCTGGTTCATTAGCTGAGGAAGTGAACGATGGAAGTTTTGATGAACTGCTGTCTCTAAATACTGAATGTCTAGAAGGTGATGAAGCAGTCACTCATGTACAGAAGTGTTTGAGGATGAAACCAATTGAACCAGAGAAATCAGACCTTCCAGAATTCCAAAGTATGACAAACATAGATAATTTGGTAAAAGGGTTAATCAGTTTAACAGGTGTGGAACATAGAAAGCGGGCAGAAGGGTCTGTTCTTTTTGCATCTCCAACATCACCAAAAAGCCCTTTTGCTTCGGTTCTGGATTTGCATAAGAGAATTTTACATTCAAGTCAATCAAGCGATCCATTTTCAGCTCATGACATTGATCAGTTGCCAGTAACAAATCCTTCTTCGGTTGAGAACTGTGACAAACAATCTGAGCTGGTTGACATGGGAGAGTGGATTACTATTTCTAATGAGTTGAAGTCACATTTAATTGAACCAAGTGACAATGTTGAAGTTGCCGAGATAGGTCCACCTGACATGGATTTTGAAGAATTCAGTCATGCATCAAAAAGATCTGCGAGTGAAGATTCAAGAAAACATGATGCTAGAATTGAGTTTGGCTCAAGTGGATCTCACGTTGACATTGAGGATAACATTGGAGGCAGTAACATGCATAAAAGGGTTATAAATGATACATCAAGTTGCCCTAATGCTGATACAGATGCTTGGGACAATGGGGACAATGATGGGGATGAGATACTGGTCGAAAACGAGCATGAGGAAGCAGTGGCTAGTGCGGAGCCTGAACTTTATGTGGCAGACTCAACTTTGGGAAAGGCGAGCAGCACTGTGAATGACAATACACACCCTGATGCTGATACAAATAATTTGGACAGTGGGGCTAATGATGGAGACATGGTGGAAGACAAACATGAGGAAGCAGTGGCTAGTGAGGAGCCTGAACTTAACGTGGCAGACTCAACTTTGGAGCTGAACTCACGCCCACAGAGAAGGCGGAAGAGTAGGGAACTTTCTAGAAGGAAAAGTCTAGCAGGGGCTGGTACAACATGGCAATCAGGTGTTAGGCGGAGCACAAGGATCAAGACAAGACCTTTGGAGTATTGGAAAGGGGAGCGGCTGTTATATGGACGTATACACGATAGTGAGTATTTTGTGTGGATATTGTTGGATCGATCACAGTTAAAATGCTTTTTGTTTTCATTTTTGCATTTACTAGCCCTCGCACGTGTATCTGGTTGCAGTTTCACTTTCTATTACGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000777 GO:0000778 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0000819 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006996 GO:0007049 GO:0007059 GO:0007080 GO:0007127 GO:0008150 GO:0008608 GO:0009987 GO:0016043 GO:0019237 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0032991 GO:0034508 GO:0034622 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0048285 GO:0050000 GO:0051179 GO:0051234 GO:0051276 GO:0051303 GO:0051310 GO:0051315 GO:0051316 GO:0051321 GO:0051382 GO:0051383 GO:0051455 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0061982 GO:0065003 GO:0065004 GO:0070013 GO:0070925 GO:0071824 GO:0071840 GO:0097159 GO:0098687 GO:0098813 GO:0140013 GO:0140014 GO:1901363 GO:1903046 GO:1903047 GO:1990837

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

484

Amino Acids

54.1

Weight (kDa)

4.95

Isoelectric Point (pI)

63.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15660
fragaria_vesca	FvH4_6g30920 FvH4_6g30920 FvH4_6g30920 FvH4_6g30920 FvH4_6g30920 FvH4_6g30920 FvH4_6g30920 FvH4_6g30920 FvH4_6g30920
malus_domestica	MD09G1215000.v1.1 MD17G1197700.v1.1
prunus_persica	Prupe.3G073700_v2.0.a1 Prupe.3G073700_v2.0.a1 Prupe.3G073700_v2.0.a1 Prupe.3G073700_v2.0.a1 Prupe.3G073700_v2.0.a1
pyrus_communis	pycom09g13190 pycom17g20260
rosa_chinensis	RchiOBHm_Chr2g0137511
rosa_laevigata	RLG00000019658 RLG00000019659
rosa_multiflora	Rmu_sc0000765.1_g000007
rosa_roxburghii	Rroxscaffold_2G00107040
rosa_rugosa	Rorug02G0342700 Rorug02G0342800 Rorug02G0342900 Rorug02G0343000 Rorug02G0343000 Rorug02G0343000
rosa_samantha	Rh2AG390600 Rh2BG398300 Rh2CG377800 Rh2DG413300
rosa_wichuraiana	Rw2G032000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	854
AccBSI	CCGCTC	1 cut(s)	1303
AccI	GTMKAC	2 cut(s)	49, 1321
AciI	CCGC	7 cut(s)	70, 95, 418, 965, 1183, 1255, 1303
AclWI	GGATC	4 cut(s)	518, 805, 1274, 1365
AcsI	RAATTY	3 cut(s)	344, 498, 719
AcvI	CACGTG	1 cut(s)	1415
AfaI	GTAC	2 cut(s)	291, 1231
AflIII	ACRYGT	1 cut(s)	1414
AgsI	TTSAA	8 cut(s)	110, 320, 510, 646, 662, 680, 716, 759
AleI	CACNNNNGTG	1 cut(s)	1329
AluBI	AGCT	5 cut(s)	194, 206, 536, 604, 1159
AluI	AGCT	5 cut(s)	194, 206, 536, 604, 1159
Alw21I	GWGCWC	1 cut(s)	1262
Alw26I	GTCTC	2 cut(s)	249, 1074
AlwI	GGATC	4 cut(s)	518, 805, 1274, 1365
AlwNI	CAGNNNCTG	1 cut(s)	1226
ApeKI	GCWGC	1 cut(s)	1011
ApoI	RAATTY	3 cut(s)	344, 498, 719
ArsI	GACNNNNNNTTYG	4 cut(s)	695, 727, 1264, 1296
AspS9I	GGNCC	1 cut(s)	695
AsuHPI	GGTGA	2 cut(s)	281, 447
AvaII	GGWCC	1 cut(s)	695
BbrPI	CACGTG	1 cut(s)	1415
BbsI	GAAGAC	1 cut(s)	1098
Bbv12I	GWGCWC	1 cut(s)	1262
BbvCI	CCTCAGC	1 cut(s)	207
BbvI	GCAGC	1 cut(s)	1023
BccI	CCATC	7 cut(s)	34, 61, 94, 178, 215, 908, 1070
BceAI	ACGGC	1 cut(s)	30
BclI	TGATCA	1 cut(s)	547
BcoDI	GTCTC	2 cut(s)	249, 1074
BfaI	CTAG	7 cut(s)	263, 774, 960, 1116, 1203, 1217, 1403
BglII	AGATCT	1 cut(s)	740
BisI	GCNGC	2 cut(s)	1012, 1304
BlpI	GCTNAGC	1 cut(s)	75
BlsI	GCNGC	2 cut(s)	1013, 1305
Bme18I	GGWCC	1 cut(s)	695
BmgT120I	GGNCC	1 cut(s)	695
BmiI	GGNNCC	2 cut(s)	969, 1125
BmsI	GCATC	5 cut(s)	452, 740, 760, 880, 1030
BpiI	GAAGAC	1 cut(s)	1098
BplI	GAGNNNNNCTC	4 cut(s)	773, 805, 1148, 1180
Bpu10I	CCTNAGC	1 cut(s)	207
Bpu1102I	GCTNAGC	1 cut(s)	75
BpuEI	CTTGAG	1 cut(s)	775
Bsa29I	ATCGAT	2 cut(s)	56, 1360
BsaAI	YACGTR	1 cut(s)	1415
BsaXI	ACNNNNNCTCC	4 cut(s)	1071, 1101, 1292, 1322
Bse1I	ACTGG	2 cut(s)	557, 933
Bse3DI	GCAATG	1 cut(s)	139
BseCI	ATCGAT	2 cut(s)	56, 1360
BseGI	GGATG	3 cut(s)	26, 312, 925
BseMI	GCAATG	1 cut(s)	139
BseMII	CTCAG	2 cut(s)	198, 591
BseNI	ACTGG	2 cut(s)	557, 933
BseRI	GAGGAG	2 cut(s)	194, 1136
BseXI	GCAGC	1 cut(s)	1023
BshVI	ATCGAT	2 cut(s)	56, 1360
BsiHKAI	GWGCWC	1 cut(s)	1262
BslFI	GGGAC	2 cut(s)	911, 920
BsmAI	GTCTC	2 cut(s)	249, 1074
BsmFI	GGGAC	2 cut(s)	911, 920
BsmI	GAATGC	1 cut(s)	85
Bsp1286I	GDGCHC	1 cut(s)	1262
Bsp1407I	TGTACA	1 cut(s)	289
Bsp143I	GATC	7 cut(s)	523, 547, 740, 797, 1266, 1357, 1361
Bsp1720I	GCTNAGC	1 cut(s)	75
BspACI	CCGC	7 cut(s)	70, 95, 418, 965, 1183, 1255, 1303
BspCNI	CTCAG	2 cut(s)	199, 592
BspDI	ATCGAT	2 cut(s)	56, 1360
BspHI	TCATGA	1 cut(s)	538
BspLI	GGNNCC	2 cut(s)	969, 1125
BspPI	GGATC	4 cut(s)	518, 805, 1274, 1365
BsrBI	CCGCTC	1 cut(s)	1303
BsrDI	GCAATG	1 cut(s)	139
BsrGI	TGTACA	1 cut(s)	289
BsrI	ACTGG	2 cut(s)	557, 933
BssMI	GATC	7 cut(s)	523, 547, 740, 797, 1266, 1357, 1361
BssNAI	GTATAC	1 cut(s)	1322
Bst1107I	GTATAC	1 cut(s)	1322
Bst4CI	ACNGT	4 cut(s)	587, 1018, 1064, 1368
Bst6I	CTCTTC	1 cut(s)	1181
BstAUI	TGTACA	1 cut(s)	289
BstBAI	YACGTR	1 cut(s)	1415
BstC8I	GCNNGC	3 cut(s)	72, 420, 1009
BstDEI	CTNAG	3 cut(s)	75, 207, 600
BstF5I	GGATG	3 cut(s)	26, 312, 925
BstKTI	GATC	7 cut(s)	526, 550, 743, 800, 1269, 1360, 1364
BstMAI	GTCTC	2 cut(s)	249, 1074
BstMBI	GATC	7 cut(s)	523, 547, 740, 797, 1266, 1357, 1361
BstMWI	GCNNNNNNNGC	1 cut(s)	76
BstNSI	RCATGY	1 cut(s)	841
BstV1I	GCAGC	1 cut(s)	1023
BstV2I	GAAGAC	1 cut(s)	1098
BstX2I	RGATCY	2 cut(s)	740, 797
BstYI	RGATCY	2 cut(s)	740, 797
BstZ17I	GTATAC	1 cut(s)	1322
Bsu15I	ATCGAT	2 cut(s)	56, 1360
BsuTUI	ATCGAT	2 cut(s)	56, 1360
BtsCI	GGATG	3 cut(s)	26, 312, 925
BtsI	GCAGTG	2 cut(s)	960, 1116
BtsIMutI	CAGTG	5 cut(s)	131, 960, 1014, 1069, 1116
Cac8I	GCNNGC	3 cut(s)	72, 420, 1009
CaiI	CAGNNNCTG	1 cut(s)	1226
CciI	TCATGA	1 cut(s)	538
Cfr13I	GGNCC	1 cut(s)	695
ClaI	ATCGAT	2 cut(s)	56, 1360
Csp6I	GTAC	2 cut(s)	290, 1230
CviQI	GTAC	2 cut(s)	290, 1230
DdeI	CTNAG	3 cut(s)	75, 207, 600
DpnI	GATC	7 cut(s)	525, 549, 742, 799, 1268, 1359, 1363
DpnII	GATC	7 cut(s)	523, 547, 740, 797, 1266, 1357, 1361
Eam1104I	CTCTTC	1 cut(s)	1181
EarI	CTCTTC	1 cut(s)	1181
EciI	GGCGGA	2 cut(s)	1198, 1270
Eco47I	GGWCC	1 cut(s)	695
Eco72I	CACGTG	1 cut(s)	1415
EcoRI	GAATTC	2 cut(s)	344, 719
EcoT22I	ATGCAT	3 cut(s)	13, 733, 843
FaqI	GGGAC	2 cut(s)	911, 920
FauI	CCCGC	2 cut(s)	63, 411
FbaI	TGATCA	1 cut(s)	547
FblI	GTMKAC	2 cut(s)	49, 1321
Fnu4HI	GCNGC	2 cut(s)	1012, 1304
FokI	GGATG	3 cut(s)	13, 319, 932
Fsp4HI	GCNGC	2 cut(s)	1012, 1304
FspBI	CTAG	7 cut(s)	263, 774, 960, 1116, 1203, 1217, 1403
GluI	GCNGC	2 cut(s)	1012, 1304
HincII	GTYRAC	3 cut(s)	50, 610, 808
HindII	GTYRAC	3 cut(s)	50, 610, 808
HinfI	GANTC	3 cut(s)	755, 989, 1145
HphI	GGTGA	2 cut(s)	281, 447
Hpy166II	GTNNAC	7 cut(s)	50, 131, 217, 610, 698, 808, 1322
Hpy188I	TCNGA	2 cut(s)	334, 601
Hpy188III	TCNNGA	8 cut(s)	116, 263, 341, 482, 539, 759, 1203, 1270
Hpy8I	GTNNAC	7 cut(s)	50, 131, 217, 610, 698, 808, 1322
Hpy99I	CGWCG	1 cut(s)	51
HpyAV	CCTTC	6 cut(s)	260, 347, 419, 579, 1173, 1200
HpyCH4III	ACNGT	4 cut(s)	587, 1018, 1064, 1368
HpyCH4IV	ACGT	4 cut(s)	804, 1137, 1318, 1414
HpyCH4V	TGCA	7 cut(s)	11, 443, 490, 731, 841, 1396, 1428
HpyF10VI	GCNNNNNNNGC	1 cut(s)	76
HpyF3I	CTNAG	3 cut(s)	75, 207, 600
HpySE526I	ACGT	4 cut(s)	804, 1137, 1318, 1414
Ksp22I	TGATCA	1 cut(s)	547
Kzo9I	GATC	7 cut(s)	523, 547, 740, 797, 1266, 1357, 1361
LmnI	GCTCC	5 cut(s)	967, 1123, 1156, 1257, 1300
Lsp1109I	GCAGC	1 cut(s)	1023
LweI	GCATC	5 cut(s)	452, 740, 760, 880, 1030
MaeI	CTAG	7 cut(s)	263, 774, 960, 1116, 1203, 1217, 1403
MaeII	ACGT	4 cut(s)	804, 1137, 1318, 1414
MaeIII	GTNAC	7 cut(s)	169, 280, 559, 587, 648, 668, 833
MalI	GATC	7 cut(s)	525, 549, 742, 799, 1268, 1359, 1363
MbiI	CCGCTC	1 cut(s)	1303
MboI	GATC	7 cut(s)	523, 547, 740, 797, 1266, 1357, 1361
MboII	GAAGA	5 cut(s)	564, 728, 764, 1103, 1198
MfeI	CAATTG	1 cut(s)	315
MflI	RGATCY	2 cut(s)	740, 797
MhlI	GDGCHC	1 cut(s)	1262
MluCI	AATT	9 cut(s)	33, 315, 344, 370, 498, 657, 719, 777, 1054
MlyI	GAGTC	2 cut(s)	983, 1139
MmeI	TCCRAC	2 cut(s)	473, 1335
MnlI	CCTC	9 cut(s)	172, 202, 297, 808, 821, 940, 1096, 1114, 1418
Mph1103I	ATGCAT	3 cut(s)	13, 733, 843
MseI	TTAA	6 cut(s)	36, 386, 395, 656, 1134, 1370
MslI	CAYNNNNRTG	2 cut(s)	1038, 1329
MspA1I	CMGCKG	1 cut(s)	97
MunI	CAATTG	1 cut(s)	315
Mva1269I	GAATGC	1 cut(s)	85
MwoI	GCNNNNNNNGC	1 cut(s)	76
NdeII	GATC	7 cut(s)	523, 547, 740, 797, 1266, 1357, 1361
NlaIV	GGNNCC	2 cut(s)	969, 1125
NmeAIII	GCCGAG	1 cut(s)	712
NmuCI	GTSAC	4 cut(s)	280, 587, 648, 668
NsiI	ATGCAT	3 cut(s)	13, 733, 843
NspI	RCATGY	1 cut(s)	841
OliI	CACNNNNGTG	1 cut(s)	1329
PagI	TCATGA	1 cut(s)	538
PcsI	WCGNNNNNNNCGW	1 cut(s)	46
PctI	GAATGC	1 cut(s)	85
PfeI	GAWTC	1 cut(s)	755
PkrI	GCNGC	2 cut(s)	1013, 1305
PleI	GAGTC	2 cut(s)	983, 1139
PmaCI	CACGTG	1 cut(s)	1415
PmlI	CACGTG	1 cut(s)	1415
PpsI	GAGTC	2 cut(s)	983, 1139
Ppu21I	YACGTR	1 cut(s)	1415
PsiI	TTATAA	1 cut(s)	854
PspCI	CACGTG	1 cut(s)	1415
PspN4I	GGNNCC	2 cut(s)	969, 1125
PspPI	GGNCC	1 cut(s)	695
PstNI	CAGNNNCTG	1 cut(s)	1226
PsuI	RGATCY	2 cut(s)	740, 797
RsaI	GTAC	2 cut(s)	291, 1231
RsaNI	GTAC	2 cut(s)	290, 1230
RseI	CAYNNNNRTG	2 cut(s)	1038, 1329
SalI	GTCGAC	1 cut(s)	48
SaqAI	TTAA	6 cut(s)	36, 386, 395, 656, 1134, 1370
SatI	GCNGC	2 cut(s)	1012, 1304
Sau3AI	GATC	7 cut(s)	523, 547, 740, 797, 1266, 1357, 1361
Sau96I	GGNCC	1 cut(s)	695
SchI	GAGTC	2 cut(s)	983, 1139
SduI	GDGCHC	1 cut(s)	1262
SfaNI	GCATC	5 cut(s)	452, 740, 760, 880, 1030
SinI	GGWCC	1 cut(s)	695
SmiMI	CAYNNNNRTG	2 cut(s)	1038, 1329
SmlI	CTYRAG	1 cut(s)	790
SmoI	CTYRAG	1 cut(s)	790
Sse9I	AATT	9 cut(s)	33, 315, 344, 370, 498, 657, 719, 777, 1054
SsiI	CCGC	7 cut(s)	70, 95, 418, 965, 1183, 1255, 1303
SspMI	CTAG	7 cut(s)	263, 774, 960, 1116, 1203, 1217, 1403
TaaI	ACNGT	4 cut(s)	587, 1018, 1064, 1368
TaiI	ACGT	4 cut(s)	807, 1140, 1321, 1417
TaqI	TCGA	4 cut(s)	49, 56, 933, 1360
TasI	AATT	9 cut(s)	33, 315, 344, 370, 498, 657, 719, 777, 1054
TatI	WGTACW	1 cut(s)	289
TauI	GCSGC	1 cut(s)	1306
TfiI	GAWTC	1 cut(s)	755
Tru1I	TTAA	6 cut(s)	36, 386, 395, 656, 1134, 1370
Tru9I	TTAA	6 cut(s)	36, 386, 395, 656, 1134, 1370
TscAI	CASTG	5 cut(s)	138, 960, 1021, 1069, 1116
TseFI	GTSAC	4 cut(s)	280, 587, 648, 668
TseI	GCWGC	1 cut(s)	1011
Tsp45I	GTSAC	4 cut(s)	280, 587, 648, 668
TspDTI	ATGAA	6 cut(s)	177, 189, 249, 288, 323, 1377
TspRI	CASTG	5 cut(s)	138, 960, 1021, 1069, 1116
VpaK11BI	GGWCC	1 cut(s)	695
XapI	RAATTY	3 cut(s)	344, 498, 719
XbaI	TCTAGA	2 cut(s)	262, 1202
XceI	RCATGY	1 cut(s)	841
XmiI	GTMKAC	2 cut(s)	49, 1321
XspI	CTAG	7 cut(s)	263, 774, 960, 1116, 1203, 1217, 1403
Zsp2I	ATGCAT	3 cut(s)	13, 733, 843

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.