Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0010538

Physical Location & Seq

Genomic Coordinates Forward (+)

35082997 .. 35086218

Gene Structure 3222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1256400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGATCTTGAAGCCAAGAGGTTTGGAAGTGGGCCTCGGGAACTTGGCGGTGCTGCTGATCTCATAAATCAGTATAAGCTTTGTCATCATCATGAATTCTTTTGCAAGAGATCACTGCCCTTGTCAATATCAGAGACTCATTATCTACATAATGTGGTGGGAGACACATCAATCAGGAAGGGGGAAGGGATGGAATTAGATCAGCTTGTTCAGAAAAACCTTTGTACGAGAGAAAAAAGTGGACATATACATCCTTTTGATTTGGGTATACTTCATGAAGCTTTTCCATTAAGGGAAACAACTCGTGTTAAATTGCCTTCTGCAGAGAAGGGGATCCGTACCTCGGGGAAGTCAAAAAGTGAGGTTGATAAAAAGGAGAGGAAGCATAAAAAGCACAGAGACAAGGATACAGATCACAAGAAACACAGAAACCGTCACAAGGACAACAATGGCGATGCTGGTATGAACAAGAATACCGCTCATGGCTTGACAACTGAGCAGTTGAAGGAACAAAAAGATTGGTCCATCCAGAAGAGGAGGCTTGCTGGTTTTGAAGATCCTCCCGTCTCCGGACATAAAAAAGCCAGAATCAAACGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

200

Amino Acids

22.83

Weight (kDa)

9.77

Isoelectric Point (pI)

42.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010538)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g09480 FvH4_3g09480
malus_domestica	MD10G1256400.v1.1
prunus_persica	Prupe.4G087000_v2.0.a1 Prupe.4G087200_v2.0.a1 Prupe.4G087200_v2.0.a1
pyrus_communis	pycom10g21220
rosa_chinensis	RchiOBHm_Chr5g0015061
rosa_laevigata	RLG00000032166
rosa_multiflora	Rmu_co8507481.1_g000001
rosa_roxburghii	Rroxscaffold_1G00061470
rosa_rugosa	Rorug05G0023800 Rorug05G0023900 Rorug05G0023900 Rorug05G0023900 Rorug05G0024000
rosa_samantha	Rh5AG118400 Rh5BG116300 Rh5CG127200 Rh5DG115200
rosa_wichuraiana	Rw5G010230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	479
AccI	GTMKAC	1 cut(s)	268
AccIII	TCCGGA	1 cut(s)	569
AciI	CCGC	2 cut(s)	48, 477
AclWI	GGATC	4 cut(s)	12, 328, 341, 551
AcsI	RAATTY	1 cut(s)	95
AfaI	GTAC	2 cut(s)	226, 340
AfiI	CCNNNNNNNGG	3 cut(s)	343, 439, 569
AgsI	TTSAA	3 cut(s)	11, 505, 554
AluBI	AGCT	3 cut(s)	79, 205, 281
AluI	AGCT	3 cut(s)	79, 205, 281
Alw26I	GTCTC	4 cut(s)	128, 156, 393, 571
AlwI	GGATC	4 cut(s)	12, 328, 341, 551
Ama87I	CYCGRG	2 cut(s)	36, 343
Aor13HI	TCCGGA	1 cut(s)	569
AoxI	GGCC	1 cut(s)	32
ApeKI	GCWGC	1 cut(s)	53
ApoI	RAATTY	1 cut(s)	95
Asp700I	GAANNNNTTC	1 cut(s)	282
AspS9I	GGNCC	2 cut(s)	32, 522
AvaI	CYCGRG	2 cut(s)	36, 343
AvaII	GGWCC	1 cut(s)	522
BamHI	GGATCC	1 cut(s)	333
BauI	CACGAG	1 cut(s)	303
BbvI	GCAGC	1 cut(s)	40
BccI	CCATC	2 cut(s)	184, 533
BciVI	GTATCC	1 cut(s)	400
BcoDI	GTCTC	4 cut(s)	128, 156, 393, 571
BfmI	CTRYAG	1 cut(s)	321
BfuI	GTATCC	1 cut(s)	400
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
Bme18I	GGWCC	1 cut(s)	522
BmeT110I	CYCGRG	2 cut(s)	36, 343
BmgT120I	GGNCC	2 cut(s)	32, 522
BmiI	GGNNCC	1 cut(s)	335
BmsI	GCATC	1 cut(s)	445
BsaBI	GATNNNNATC	1 cut(s)	411
BsaJI	CCNNGG	2 cut(s)	35, 342
BsaWI	WCCGGW	1 cut(s)	569
Bsc4I	CCNNNNNNNGG	3 cut(s)	343, 439, 569
Bse8I	GATNNNNATC	1 cut(s)	411
BseAI	TCCGGA	1 cut(s)	569
BseDI	CCNNGG	2 cut(s)	35, 342
BseGI	GGATG	3 cut(s)	195, 250, 525
BseJI	GATNNNNATC	1 cut(s)	411
BseLI	CCNNNNNNNGG	3 cut(s)	343, 439, 569
BseMII	CTCAG	1 cut(s)	486
BseRI	GAGGAG	1 cut(s)	550
BseXI	GCAGC	1 cut(s)	40
BshFI	GGCC	1 cut(s)	34
BsiHKCI	CYCGRG	2 cut(s)	36, 343
BsiSI	CCGG	1 cut(s)	570
BslI	CCNNNNNNNGG	3 cut(s)	343, 439, 569
BsmAI	GTCTC	4 cut(s)	128, 156, 393, 571
BsmBI	CGTCTC	1 cut(s)	571
BsnI	GGCC	1 cut(s)	34
BsoBI	CYCGRG	2 cut(s)	36, 343
Bsp13I	TCCGGA	1 cut(s)	569
Bsp143I	GATC	7 cut(s)	4, 58, 110, 199, 333, 412, 556
BspACI	CCGC	2 cut(s)	48, 477
BspANI	GGCC	1 cut(s)	34
BspCNI	CTCAG	1 cut(s)	487
BspEI	TCCGGA	1 cut(s)	569
BspHI	TCATGA	2 cut(s)	91, 274
BspLI	GGNNCC	1 cut(s)	335
BspMAI	CTGCAG	1 cut(s)	325
BspPI	GGATC	4 cut(s)	12, 328, 341, 551
BsrBI	CCGCTC	1 cut(s)	479
BssECI	CCNNGG	2 cut(s)	35, 342
BssMI	GATC	7 cut(s)	4, 58, 110, 199, 333, 412, 556
BssNAI	GTATAC	1 cut(s)	269
BssSI	CACGAG	1 cut(s)	303
Bst1107I	GTATAC	1 cut(s)	269
Bst2BI	CACGAG	1 cut(s)	303
Bst4CI	ACNGT	1 cut(s)	434
Bst6I	CTCTTC	1 cut(s)	527
BstC8I	GCNNGC	1 cut(s)	543
BstDEI	CTNAG	1 cut(s)	495
BstF5I	GGATG	3 cut(s)	195, 250, 525
BstKTI	GATC	7 cut(s)	7, 61, 113, 202, 336, 415, 559
BstMAI	GTCTC	4 cut(s)	128, 156, 393, 571
BstMBI	GATC	7 cut(s)	4, 58, 110, 199, 333, 412, 556
BstMWI	GCNNNNNNNGC	1 cut(s)	391
BstSFI	CTRYAG	1 cut(s)	321
BstV1I	GCAGC	1 cut(s)	40
BstX2I	RGATCY	3 cut(s)	4, 333, 556
BstYI	RGATCY	3 cut(s)	4, 333, 556
BstZ17I	GTATAC	1 cut(s)	269
BsuI	GTATCC	1 cut(s)	400
BsuRI	GGCC	1 cut(s)	34
BtgZI	GCGATG	1 cut(s)	468
BtsCI	GGATG	3 cut(s)	195, 250, 525
BtsI	GCAGTG	1 cut(s)	113
BtsIMutI	CAGTG	1 cut(s)	113
Cac8I	GCNNGC	1 cut(s)	543
CciI	TCATGA	2 cut(s)	91, 274
Cfr13I	GGNCC	2 cut(s)	32, 522
Csp6I	GTAC	2 cut(s)	225, 339
CviAII	CATG	3 cut(s)	92, 275, 482
CviJI	RGCY	8 cut(s)	14, 34, 79, 205, 281, 486, 541, 584
CviKI_1	RGCY	8 cut(s)	14, 34, 79, 205, 281, 486, 541, 584
CviQI	GTAC	2 cut(s)	225, 339
DdeI	CTNAG	1 cut(s)	495
DpnI	GATC	7 cut(s)	6, 60, 112, 201, 335, 414, 558
DpnII	GATC	7 cut(s)	4, 58, 110, 199, 333, 412, 556
Eam1104I	CTCTTC	1 cut(s)	527
EarI	CTCTTC	1 cut(s)	527
Eco47I	GGWCC	1 cut(s)	522
Eco88I	CYCGRG	2 cut(s)	36, 343
EcoRI	GAATTC	1 cut(s)	95
Esp3I	CGTCTC	1 cut(s)	571
FaeI	CATG	3 cut(s)	95, 278, 485
FatI	CATG	3 cut(s)	91, 274, 481
FblI	GTMKAC	1 cut(s)	268
Fnu4HI	GCNGC	1 cut(s)	54
FokI	GGATG	3 cut(s)	202, 237, 512
Fsp4HI	GCNGC	1 cut(s)	54
GluI	GCNGC	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	34
HapII	CCGG	1 cut(s)	570
Hin1II	CATG	3 cut(s)	95, 278, 485
HindIII	AAGCTT	2 cut(s)	77, 279
HinfI	GANTC	2 cut(s)	136, 588
HpaII	CCGG	1 cut(s)	570
Hpy166II	GTNNAC	2 cut(s)	242, 269
Hpy188I	TCNGA	2 cut(s)	133, 213
Hpy188III	TCNNGA	7 cut(s)	8, 38, 92, 175, 275, 529, 570
Hpy8I	GTNNAC	2 cut(s)	242, 269
HpyAV	CCTTC	5 cut(s)	172, 179, 322, 327, 499
HpyCH4III	ACNGT	1 cut(s)	434
HpyCH4V	TGCA	2 cut(s)	105, 323
HpyF10VI	GCNNNNNNNGC	1 cut(s)	391
HpyF3I	CTNAG	1 cut(s)	495
Hsp92II	CATG	3 cut(s)	95, 278, 485
Kpn2I	TCCGGA	1 cut(s)	569
Kzo9I	GATC	7 cut(s)	4, 58, 110, 199, 333, 412, 556
LpnPI	CCDG	5 cut(s)	160, 444, 531, 542, 583
Lsp1109I	GCAGC	1 cut(s)	40
LweI	GCATC	1 cut(s)	445
MaeIII	GTNAC	1 cut(s)	434
MalI	GATC	7 cut(s)	6, 60, 112, 201, 335, 414, 558
MbiI	CCGCTC	1 cut(s)	479
MboI	GATC	7 cut(s)	4, 58, 110, 199, 333, 412, 556
MboII	GAAGA	2 cut(s)	544, 566
MflI	RGATCY	3 cut(s)	4, 333, 556
MluCI	AATT	3 cut(s)	95, 194, 311
MlyI	GAGTC	1 cut(s)	130
MnlI	CCTC	8 cut(s)	12, 45, 352, 355, 372, 528, 531, 570
MroI	TCCGGA	1 cut(s)	569
MroXI	GAANNNNTTC	1 cut(s)	282
MseI	TTAA	2 cut(s)	290, 309
MslI	CAYNNNNRTG	1 cut(s)	90
MspI	CCGG	1 cut(s)	570
MwoI	GCNNNNNNNGC	1 cut(s)	391
NdeII	GATC	7 cut(s)	4, 58, 110, 199, 333, 412, 556
NlaIII	CATG	3 cut(s)	95, 278, 485
NlaIV	GGNNCC	1 cut(s)	335
NmuCI	GTSAC	1 cut(s)	434
PagI	TCATGA	2 cut(s)	91, 274
PdmI	GAANNNNTTC	1 cut(s)	282
PfeI	GAWTC	1 cut(s)	588
PkrI	GCNGC	1 cut(s)	55
PleI	GAGTC	1 cut(s)	130
PpsI	GAGTC	1 cut(s)	130
PspN4I	GGNNCC	1 cut(s)	335
PspPI	GGNCC	2 cut(s)	32, 522
PstI	CTGCAG	1 cut(s)	325
PsuI	RGATCY	3 cut(s)	4, 333, 556
RsaI	GTAC	2 cut(s)	226, 340
RsaNI	GTAC	2 cut(s)	225, 339
RseI	CAYNNNNRTG	1 cut(s)	90
SaqAI	TTAA	2 cut(s)	290, 309
SatI	GCNGC	1 cut(s)	54
Sau3AI	GATC	7 cut(s)	4, 58, 110, 199, 333, 412, 556
Sau96I	GGNCC	2 cut(s)	32, 522
SchI	GAGTC	1 cut(s)	130
SetI	ASST	7 cut(s)	23, 81, 207, 222, 283, 344, 366
SfaNI	GCATC	1 cut(s)	445
SfcI	CTRYAG	1 cut(s)	321
SinI	GGWCC	1 cut(s)	522
SmiMI	CAYNNNNRTG	1 cut(s)	90
Sse9I	AATT	3 cut(s)	95, 194, 311
SsiI	CCGC	2 cut(s)	48, 477
TaaI	ACNGT	1 cut(s)	434
TasI	AATT	3 cut(s)	95, 194, 311
TfiI	GAWTC	1 cut(s)	588
Tru1I	TTAA	2 cut(s)	290, 309
Tru9I	TTAA	2 cut(s)	290, 309
TscAI	CASTG	1 cut(s)	120
TseFI	GTSAC	1 cut(s)	434
TseI	GCWGC	1 cut(s)	53
Tsp45I	GTSAC	1 cut(s)	434
TspDTI	ATGAA	4 cut(s)	108, 263, 291, 479
TspGWI	ACGGA	1 cut(s)	326
TspRI	CASTG	1 cut(s)	120
VpaK11BI	GGWCC	1 cut(s)	522
XapI	RAATTY	1 cut(s)	95
XmiI	GTMKAC	1 cut(s)	268
XmnI	GAANNNNTTC	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.