Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0010538

Physical Location & Seq

Genomic Coordinates Forward (+)

83586871 .. 83591139

Gene Structure 4269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00061470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGATCTTGACGGGAAAAGGTTTGGAAGAGGGCCTCGGGAACTTGGTGGTGCTACCAATCTCATAAATCAGTATAAGCTTTGGCCTTATCATGAATTCTTTTGCAAAAGGCCGCTTCCTTTATCAGAGACTCATTATCTTCATAATGTGGTGGGAGACACAGAAATCAGGAAAGGGGAGGGGATGAAATTGGATCACCTATTTGAGAACACCCCTTATATGAGAGAAAGGAGTGCAAACATACATCCTTTCGATTTGGGTATGCTTAGTGAAGCTTTCCGAATAAAGGAGACAACTCCTGTTCATTTACCTTCCGCCGAGAAAGGGATCCGTACTTCAGTGGTGAAGTCAAAGGGTGAGTTAGAAGACAAGGAAAGGAAGCATAAAAAGAACAAAGACAAGGATAAGGATCGTAAGAAGCACAAAAAACGTCGCCGGGACAACCGCAGTGATGCTGATTGCAGCAATAAGAATGTTACTAATGGCCTGAAAACTGTGCAGTTGAAGGAACAGCCTGATATGTTCATTCAGAAGAGGAGGCTCAATGGTTATGGAGATCTTTCTGTCCATGAAAATAAAAGAGTGAGATTAAAAATTAAATCAATAAAAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

204

Amino Acids

23.89

Weight (kDa)

9.92

Isoelectric Point (pI)

42.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010538)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g09480 FvH4_3g09480
malus_domestica	MD10G1256400.v1.1
prunus_persica	Prupe.4G087000_v2.0.a1 Prupe.4G087200_v2.0.a1 Prupe.4G087200_v2.0.a1
pyrus_communis	pycom10g21220
rosa_chinensis	RchiOBHm_Chr5g0015061
rosa_laevigata	RLG00000032166
rosa_multiflora	Rmu_co8507481.1_g000001
rosa_roxburghii	Rroxscaffold_1G00061470
rosa_rugosa	Rorug05G0023800 Rorug05G0023900 Rorug05G0023900 Rorug05G0023900 Rorug05G0024000
rosa_samantha	Rh5AG118400 Rh5BG116300 Rh5CG127200 Rh5DG115200
rosa_wichuraiana	Rw5G010230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	113, 315, 445
AclWI	GGATC	5 cut(s)	12, 201, 322, 335, 417
AcsI	RAATTY	1 cut(s)	95
AcuI	CTGAAG	1 cut(s)	321
AfaI	GTAC	1 cut(s)	334
AfiI	CCNNNNNNNGG	2 cut(s)	286, 324
AgsI	TTSAA	1 cut(s)	505
AluBI	AGCT	2 cut(s)	79, 275
AluI	AGCT	2 cut(s)	79, 275
Alw26I	GTCTC	3 cut(s)	122, 150, 284
AlwI	GGATC	5 cut(s)	12, 201, 322, 335, 417
Ama87I	CYCGRG	1 cut(s)	36
AoxI	GGCC	4 cut(s)	32, 83, 110, 484
ApeKI	GCWGC	1 cut(s)	462
ApoI	RAATTY	1 cut(s)	95
AspS9I	GGNCC	1 cut(s)	32
AsuC2I	CCSGG	1 cut(s)	437
AsuHPI	GGTGA	3 cut(s)	188, 355, 368
AvaI	CYCGRG	1 cut(s)	36
BamHI	GGATCC	1 cut(s)	327
BbsI	GAAGAC	1 cut(s)	372
BbvI	GCAGC	1 cut(s)	474
BcnI	CCSGG	1 cut(s)	437
BcoDI	GTCTC	3 cut(s)	122, 150, 284
BglII	AGATCT	1 cut(s)	556
BisI	GCNGC	2 cut(s)	113, 463
BlsI	GCNGC	2 cut(s)	114, 464
Bme1390I	CCNGG	1 cut(s)	437
BmeT110I	CYCGRG	1 cut(s)	36
BmgT120I	GGNCC	1 cut(s)	32
BmiI	GGNNCC	1 cut(s)	329
BmrFI	CCNGG	1 cut(s)	437
BmsI	GCATC	1 cut(s)	442
BpiI	GAAGAC	1 cut(s)	372
BpuMI	CCSGG	1 cut(s)	437
BsaBI	GATNNNNATC	1 cut(s)	408
BsaJI	CCNNGG	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	2 cut(s)	286, 324
Bse8I	GATNNNNATC	1 cut(s)	408
BseDI	CCNNGG	1 cut(s)	35
BseGI	GGATG	2 cut(s)	189, 244
BseJI	GATNNNNATC	1 cut(s)	408
BseLI	CCNNNNNNNGG	2 cut(s)	286, 324
BseRI	GAGGAG	1 cut(s)	550
BseXI	GCAGC	1 cut(s)	474
BsgI	GTGCAG	1 cut(s)	518
BshFI	GGCC	4 cut(s)	34, 85, 112, 486
BsiHKCI	CYCGRG	1 cut(s)	36
BsiSI	CCGG	1 cut(s)	436
BslFI	GGGAC	1 cut(s)	452
BslI	CCNNNNNNNGG	2 cut(s)	286, 324
BsmAI	GTCTC	3 cut(s)	122, 150, 284
BsmFI	GGGAC	1 cut(s)	452
BsnI	GGCC	4 cut(s)	34, 85, 112, 486
BsoBI	CYCGRG	1 cut(s)	36
Bsp143I	GATC	5 cut(s)	4, 193, 327, 409, 556
BspACI	CCGC	3 cut(s)	113, 315, 445
BspANI	GGCC	4 cut(s)	34, 85, 112, 486
BspHI	TCATGA	1 cut(s)	91
BspLI	GGNNCC	1 cut(s)	329
BspPI	GGATC	5 cut(s)	12, 201, 322, 335, 417
BssECI	CCNNGG	1 cut(s)	35
BssMI	GATC	5 cut(s)	4, 193, 327, 409, 556
Bst4CI	ACNGT	1 cut(s)	496
Bst6I	CTCTTC	2 cut(s)	22, 527
BstDEI	CTNAG	1 cut(s)	266
BstF5I	GGATG	2 cut(s)	189, 244
BstKTI	GATC	5 cut(s)	7, 196, 330, 412, 559
BstMAI	GTCTC	3 cut(s)	122, 150, 284
BstMBI	GATC	5 cut(s)	4, 193, 327, 409, 556
BstSCI	CCNGG	1 cut(s)	435
BstV1I	GCAGC	1 cut(s)	474
BstV2I	GAAGAC	1 cut(s)	372
BstX2I	RGATCY	3 cut(s)	4, 327, 556
BstYI	RGATCY	3 cut(s)	4, 327, 556
BsuRI	GGCC	4 cut(s)	34, 85, 112, 486
BtsCI	GGATG	2 cut(s)	189, 244
BtsI	GCAGTG	1 cut(s)	454
BtsIMutI	CAGTG	2 cut(s)	345, 454
CciI	TCATGA	1 cut(s)	91
Cfr13I	GGNCC	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	333
CviAII	CATG	2 cut(s)	92, 569
CviJI	RGCY	8 cut(s)	34, 79, 85, 112, 275, 486, 514, 541
CviKI_1	RGCY	8 cut(s)	34, 79, 85, 112, 275, 486, 514, 541
CviQI	GTAC	1 cut(s)	333
DdeI	CTNAG	1 cut(s)	266
DpnI	GATC	5 cut(s)	6, 195, 329, 411, 558
DpnII	GATC	5 cut(s)	4, 193, 327, 409, 556
Eam1104I	CTCTTC	2 cut(s)	22, 527
EarI	CTCTTC	2 cut(s)	22, 527
EciI	GGCGGA	1 cut(s)	304
Eco57I	CTGAAG	1 cut(s)	321
Eco88I	CYCGRG	1 cut(s)	36
EcoO109I	RGGNCCY	1 cut(s)	32
EcoRI	GAATTC	1 cut(s)	95
FaeI	CATG	2 cut(s)	95, 572
FaqI	GGGAC	1 cut(s)	452
FatI	CATG	2 cut(s)	91, 568
Fnu4HI	GCNGC	2 cut(s)	113, 463
FokI	GGATG	2 cut(s)	196, 231
Fsp4HI	GCNGC	2 cut(s)	113, 463
GluI	GCNGC	2 cut(s)	113, 463
HaeIII	GGCC	4 cut(s)	34, 85, 112, 486
HapII	CCGG	1 cut(s)	436
Hin1II	CATG	2 cut(s)	95, 572
HindIII	AAGCTT	2 cut(s)	77, 273
HinfI	GANTC	1 cut(s)	130
HpaII	CCGG	1 cut(s)	436
HphI	GGTGA	3 cut(s)	188, 355, 368
Hpy188I	TCNGA	3 cut(s)	127, 281, 531
Hpy188III	TCNNGA	4 cut(s)	8, 38, 92, 169
Hpy99I	CGWCG	1 cut(s)	435
HpyAV	CCTTC	2 cut(s)	321, 499
HpyCH4III	ACNGT	1 cut(s)	496
HpyCH4IV	ACGT	1 cut(s)	430
HpyCH4V	TGCA	4 cut(s)	105, 236, 462, 499
HpyF3I	CTNAG	1 cut(s)	266
HpySE526I	ACGT	1 cut(s)	430
Hsp92II	CATG	2 cut(s)	95, 572
Kzo9I	GATC	5 cut(s)	4, 193, 327, 409, 556
LpnPI	CCDG	5 cut(s)	154, 312, 449, 500, 528
Lsp1109I	GCAGC	1 cut(s)	474
LweI	GCATC	1 cut(s)	442
MaeII	ACGT	1 cut(s)	430
MaeIII	GTNAC	1 cut(s)	475
MalI	GATC	5 cut(s)	6, 195, 329, 411, 558
MboI	GATC	5 cut(s)	4, 193, 327, 409, 556
MboII	GAAGA	4 cut(s)	39, 131, 377, 544
MflI	RGATCY	3 cut(s)	4, 327, 556
MluCI	AATT	3 cut(s)	95, 188, 594
MlyI	GAGTC	1 cut(s)	124
MnlI	CCTC	5 cut(s)	23, 45, 172, 528, 531
MseI	TTAA	2 cut(s)	590, 597
MspI	CCGG	1 cut(s)	436
MspR9I	CCNGG	1 cut(s)	437
NciI	CCSGG	1 cut(s)	437
NdeII	GATC	5 cut(s)	4, 193, 327, 409, 556
NlaIII	CATG	2 cut(s)	95, 572
NlaIV	GGNNCC	1 cut(s)	329
NmeAIII	GCCGAG	1 cut(s)	343
PagI	TCATGA	1 cut(s)	91
PkrI	GCNGC	2 cut(s)	114, 464
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
PspN4I	GGNNCC	1 cut(s)	329
PspPI	GGNCC	1 cut(s)	32
PsuI	RGATCY	3 cut(s)	4, 327, 556
RsaI	GTAC	1 cut(s)	334
RsaNI	GTAC	1 cut(s)	333
SaqAI	TTAA	2 cut(s)	590, 597
SatI	GCNGC	2 cut(s)	113, 463
Sau3AI	GATC	5 cut(s)	4, 193, 327, 409, 556
Sau96I	GGNCC	1 cut(s)	32
SchI	GAGTC	1 cut(s)	124
ScrFI	CCNGG	1 cut(s)	437
SetI	ASST	6 cut(s)	23, 81, 201, 277, 313, 433
SfaNI	GCATC	1 cut(s)	442
Sse9I	AATT	3 cut(s)	95, 188, 594
SsiI	CCGC	3 cut(s)	113, 315, 445
StyD4I	CCNGG	1 cut(s)	435
TaaI	ACNGT	1 cut(s)	496
TaiI	ACGT	1 cut(s)	433
TaqI	TCGA	1 cut(s)	252
TasI	AATT	3 cut(s)	95, 188, 594
TauI	GCSGC	1 cut(s)	115
Tru1I	TTAA	2 cut(s)	590, 597
Tru9I	TTAA	2 cut(s)	590, 597
TscAI	CASTG	2 cut(s)	345, 454
TseI	GCWGC	1 cut(s)	462
TspDTI	ATGAA	6 cut(s)	108, 131, 200, 293, 514, 585
TspGWI	ACGGA	1 cut(s)	320
TspRI	CASTG	2 cut(s)	345, 454
XapI	RAATTY	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.