Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0010538

Physical Location & Seq

Genomic Coordinates Reverse (-)

11246744 .. 11250709

Gene Structure 3966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G010230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGATCTTGACCCGAAAAGGTTTGGAAGAGGGCCTCGGGAACTTGGTGGTGCTGCCAATCTCATAAATCAGTATAAGCTTTGGCCTTATCATGAATTCTTTTGCAAAAGGTCGCTTCCTTTATCAGAGACTCATTATCTTCATAATGTGGTGGGAGACACAGAGATCAGGAAAGGGGAGGGGATGAAATTGGATCAGCTATTTGAGAACACCCCTTATATGAGAGAAAGGAATGCAAACATACATCCTTTCGATTTGGGTATGCTCAGTGAAGCTTTCCGAATAAAGGAGACAACTCCTGTTCATTTACCTTCCGCCGAGAAAGGGATCCGTACCTCAGTGGTGAAGTCAAAGGGTGAGTTAGAAGACAAGGAAAGGAAGTATAAAAAGAACAAAGACAAGGATAAGGATCGTAAGAAGCACAAAAAACGTCGCAAGGACAACCGCGGTGATGCTGATTACAGCAATAAGAATGTTACTAATGGCTTGGAAACTGTGCAGTTGAAGGAACAGCCAGATATGTTCATTCAGAAGAGGAGGCTCAATGGTTATGAAGATCTTTCTGTCCGTGAAAATAAAAGAGTGAGATTAAAAATTAAATCAATGAAAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

204

Amino Acids

24.05

Weight (kDa)

9.82

Isoelectric Point (pI)

38.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010538)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g09480 FvH4_3g09480
malus_domestica	MD10G1256400.v1.1
prunus_persica	Prupe.4G087000_v2.0.a1 Prupe.4G087200_v2.0.a1 Prupe.4G087200_v2.0.a1
pyrus_communis	pycom10g21220
rosa_chinensis	RchiOBHm_Chr5g0015061
rosa_laevigata	RLG00000032166
rosa_multiflora	Rmu_co8507481.1_g000001
rosa_roxburghii	Rroxscaffold_1G00061470
rosa_rugosa	Rorug05G0023800 Rorug05G0023900 Rorug05G0023900 Rorug05G0023900 Rorug05G0024000
rosa_samantha	Rh5AG118400 Rh5BG116300 Rh5CG127200 Rh5DG115200
rosa_wichuraiana	Rw5G010230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	447
AciI	CCGC	3 cut(s)	315, 445, 447
AclWI	GGATC	5 cut(s)	12, 201, 322, 335, 417
AcsI	RAATTY	1 cut(s)	95
AfaI	GTAC	1 cut(s)	334
AfiI	CCNNNNNNNGG	2 cut(s)	286, 324
AgsI	TTSAA	1 cut(s)	505
AluBI	AGCT	3 cut(s)	79, 199, 275
AluI	AGCT	3 cut(s)	79, 199, 275
Alw26I	GTCTC	3 cut(s)	122, 150, 284
AlwI	GGATC	5 cut(s)	12, 201, 322, 335, 417
Ama87I	CYCGRG	1 cut(s)	36
AoxI	GGCC	2 cut(s)	32, 83
ApeKI	GCWGC	1 cut(s)	53
ApoI	RAATTY	1 cut(s)	95
AspS9I	GGNCC	1 cut(s)	32
AsuHPI	GGTGA	3 cut(s)	355, 368, 461
AvaI	CYCGRG	1 cut(s)	36
BamHI	GGATCC	1 cut(s)	327
BbsI	GAAGAC	1 cut(s)	372
BbvI	GCAGC	1 cut(s)	40
BcoDI	GTCTC	3 cut(s)	122, 150, 284
BglII	AGATCT	1 cut(s)	556
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
BmeT110I	CYCGRG	1 cut(s)	36
BmgT120I	GGNCC	1 cut(s)	32
BmiI	GGNNCC	1 cut(s)	329
BmsI	GCATC	1 cut(s)	442
BpiI	GAAGAC	1 cut(s)	372
BsaBI	GATNNNNATC	1 cut(s)	408
BsaJI	CCNNGG	2 cut(s)	35, 445
Bsc4I	CCNNNNNNNGG	2 cut(s)	286, 324
Bse8I	GATNNNNATC	1 cut(s)	408
BseDI	CCNNGG	2 cut(s)	35, 445
BseGI	GGATG	2 cut(s)	189, 244
BseJI	GATNNNNATC	1 cut(s)	408
BseLI	CCNNNNNNNGG	2 cut(s)	286, 324
BseMII	CTCAG	2 cut(s)	280, 351
BseRI	GAGGAG	1 cut(s)	550
BseXI	GCAGC	1 cut(s)	40
BsgI	GTGCAG	1 cut(s)	518
Bsh1236I	CGCG	1 cut(s)	447
BshFI	GGCC	2 cut(s)	34, 85
BsiHKCI	CYCGRG	1 cut(s)	36
BslI	CCNNNNNNNGG	2 cut(s)	286, 324
BsmAI	GTCTC	3 cut(s)	122, 150, 284
BsmI	GAATGC	1 cut(s)	238
BsnI	GGCC	2 cut(s)	34, 85
BsoBI	CYCGRG	1 cut(s)	36
Bsp143I	GATC	6 cut(s)	4, 165, 193, 327, 409, 556
BspACI	CCGC	3 cut(s)	315, 445, 447
BspANI	GGCC	2 cut(s)	34, 85
BspCNI	CTCAG	2 cut(s)	279, 350
BspFNI	CGCG	1 cut(s)	447
BspHI	TCATGA	1 cut(s)	91
BspLI	GGNNCC	1 cut(s)	329
BspPI	GGATC	5 cut(s)	12, 201, 322, 335, 417
BssECI	CCNNGG	2 cut(s)	35, 445
BssMI	GATC	6 cut(s)	4, 165, 193, 327, 409, 556
Bst4CI	ACNGT	1 cut(s)	496
Bst6I	CTCTTC	2 cut(s)	22, 527
BstDEI	CTNAG	2 cut(s)	266, 337
BstDSI	CCRYGG	1 cut(s)	445
BstF5I	GGATG	2 cut(s)	189, 244
BstFNI	CGCG	1 cut(s)	447
BstKTI	GATC	6 cut(s)	7, 168, 196, 330, 412, 559
BstMAI	GTCTC	3 cut(s)	122, 150, 284
BstMBI	GATC	6 cut(s)	4, 165, 193, 327, 409, 556
BstUI	CGCG	1 cut(s)	447
BstV1I	GCAGC	1 cut(s)	40
BstV2I	GAAGAC	1 cut(s)	372
BstX2I	RGATCY	3 cut(s)	4, 327, 556
BstYI	RGATCY	3 cut(s)	4, 327, 556
BsuRI	GGCC	2 cut(s)	34, 85
BtgI	CCRYGG	1 cut(s)	445
BtsCI	GGATG	2 cut(s)	189, 244
BtsIMutI	CAGTG	2 cut(s)	274, 345
CciI	TCATGA	1 cut(s)	91
Cfr13I	GGNCC	1 cut(s)	32
Cfr42I	CCGCGG	1 cut(s)	448
Csp6I	GTAC	1 cut(s)	333
CviAII	CATG	1 cut(s)	92
CviJI	RGCY	8 cut(s)	34, 79, 85, 199, 275, 486, 514, 541
CviKI_1	RGCY	8 cut(s)	34, 79, 85, 199, 275, 486, 514, 541
CviQI	GTAC	1 cut(s)	333
DdeI	CTNAG	2 cut(s)	266, 337
DpnI	GATC	6 cut(s)	6, 167, 195, 329, 411, 558
DpnII	GATC	6 cut(s)	4, 165, 193, 327, 409, 556
Eam1104I	CTCTTC	2 cut(s)	22, 527
EarI	CTCTTC	2 cut(s)	22, 527
EciI	GGCGGA	1 cut(s)	304
Eco88I	CYCGRG	1 cut(s)	36
EcoO109I	RGGNCCY	1 cut(s)	32
EcoRI	GAATTC	1 cut(s)	95
FaeI	CATG	1 cut(s)	95
FatI	CATG	1 cut(s)	91
Fnu4HI	GCNGC	1 cut(s)	54
FokI	GGATG	2 cut(s)	196, 231
Fsp4HI	GCNGC	1 cut(s)	54
GluI	GCNGC	1 cut(s)	54
HaeIII	GGCC	2 cut(s)	34, 85
Hin1II	CATG	1 cut(s)	95
HindIII	AAGCTT	2 cut(s)	77, 273
HinfI	GANTC	1 cut(s)	130
HphI	GGTGA	3 cut(s)	355, 368, 461
Hpy188I	TCNGA	3 cut(s)	127, 281, 531
Hpy188III	TCNNGA	4 cut(s)	8, 38, 92, 169
Hpy99I	CGWCG	1 cut(s)	435
HpyAV	CCTTC	2 cut(s)	321, 499
HpyCH4III	ACNGT	1 cut(s)	496
HpyCH4IV	ACGT	1 cut(s)	430
HpyCH4V	TGCA	3 cut(s)	105, 236, 499
HpyF3I	CTNAG	2 cut(s)	266, 337
HpySE526I	ACGT	1 cut(s)	430
Hsp92II	CATG	1 cut(s)	95
KspI	CCGCGG	1 cut(s)	448
Kzo9I	GATC	6 cut(s)	4, 165, 193, 327, 409, 556
LpnPI	CCDG	3 cut(s)	154, 312, 528
Lsp1109I	GCAGC	1 cut(s)	40
LweI	GCATC	1 cut(s)	442
MaeII	ACGT	1 cut(s)	430
MaeIII	GTNAC	1 cut(s)	475
MalI	GATC	6 cut(s)	6, 167, 195, 329, 411, 558
MboI	GATC	6 cut(s)	4, 165, 193, 327, 409, 556
MboII	GAAGA	5 cut(s)	39, 131, 377, 544, 566
MflI	RGATCY	3 cut(s)	4, 327, 556
MluCI	AATT	3 cut(s)	95, 188, 594
MlyI	GAGTC	1 cut(s)	124
MnlI	CCTC	6 cut(s)	23, 45, 172, 346, 528, 531
MseI	TTAA	2 cut(s)	590, 597
MspA1I	CMGCKG	1 cut(s)	447
Mva1269I	GAATGC	1 cut(s)	238
MvnI	CGCG	1 cut(s)	447
NdeII	GATC	6 cut(s)	4, 165, 193, 327, 409, 556
NlaIII	CATG	1 cut(s)	95
NlaIV	GGNNCC	1 cut(s)	329
NmeAIII	GCCGAG	1 cut(s)	343
PagI	TCATGA	1 cut(s)	91
PctI	GAATGC	1 cut(s)	238
PkrI	GCNGC	1 cut(s)	55
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
PspN4I	GGNNCC	1 cut(s)	329
PspPI	GGNCC	1 cut(s)	32
PsuI	RGATCY	3 cut(s)	4, 327, 556
RsaI	GTAC	1 cut(s)	334
RsaNI	GTAC	1 cut(s)	333
SacII	CCGCGG	1 cut(s)	448
SaqAI	TTAA	2 cut(s)	590, 597
SatI	GCNGC	1 cut(s)	54
Sau3AI	GATC	6 cut(s)	4, 165, 193, 327, 409, 556
Sau96I	GGNCC	1 cut(s)	32
SchI	GAGTC	1 cut(s)	124
SetI	ASST	8 cut(s)	23, 81, 113, 201, 277, 313, 338, 433
SfaNI	GCATC	1 cut(s)	442
Sfr303I	CCGCGG	1 cut(s)	448
SgrBI	CCGCGG	1 cut(s)	448
Sse9I	AATT	3 cut(s)	95, 188, 594
SsiI	CCGC	3 cut(s)	315, 445, 447
TaaI	ACNGT	1 cut(s)	496
TaiI	ACGT	1 cut(s)	433
TaqI	TCGA	1 cut(s)	252
TasI	AATT	3 cut(s)	95, 188, 594
Tru1I	TTAA	2 cut(s)	590, 597
Tru9I	TTAA	2 cut(s)	590, 597
TscAI	CASTG	2 cut(s)	274, 345
TseI	GCWGC	1 cut(s)	53
TspDTI	ATGAA	6 cut(s)	108, 131, 200, 293, 514, 567
TspGWI	ACGGA	2 cut(s)	320, 557
TspRI	CASTG	2 cut(s)	274, 345
XapI	RAATTY	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.