Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0010538

Physical Location & Seq

Genomic Coordinates Reverse (-)

10605475 .. 10608698

Gene Structure 3224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG127200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGTCACGTTTATCATATTTTGGCGGGAACAAATCCCGTAAATCCGATAGGACGCAGGAACAGCCCCCAACCGCCGATCTCCAACATCCAATACGGCGTGTCGTTTTTCAGATGGATCTTGACGCGAAAAGGTTTGGAAGAGGGCCTCGGGAACTTGGTGGTGCTGCCAATCTCATTAATCAGTATAAGCTTTGGCCTTATCATGAATTCTTTTGCAAAAGGTCGCTTCCTTTATCAGAGACTCATTATCTTCATAATGTGGTGGGAGACACAGAGATCAGGAAAGGGGAGGGGATGAAATTGGATCAGCTATTTGAGAACACCCCTTATATGAGAGAAAGGAATGCAAACATACATCCTTTCGATTTGGGTATGCTTAGTGAAGCTTTCCGAATAAAGGAGACAACTCCTGTTCATTTACCTTCCGCCGAGAAAGGGATTCGTACCTCAGTGGTGAAGTCAAAGGGTGAGTTAGAAGACAAGGAAAGGAAGCATAAAAAGAACAAAGACAAGGATAAGGATCGTAAGAAGCACAAAAAACGTCGCAAGGACAACCTCGGTGATGCTGATTACAGCAATAAGAATGTTACTAATGGCTTGAAAACTGTGCAGTTGAAGGAACAGCCAGATATGTTCATTCAGAAGAGGAGGCTCAATGGTTATGAAGATCTTTCTGTCCGTGAAAATAAAAGAGTGAGAATCCAAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

236

Amino Acids

27.72

Weight (kDa)

9.97

Isoelectric Point (pI)

47.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010538)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g09480 FvH4_3g09480
malus_domestica	MD10G1256400.v1.1
prunus_persica	Prupe.4G087000_v2.0.a1 Prupe.4G087200_v2.0.a1 Prupe.4G087200_v2.0.a1
pyrus_communis	pycom10g21220
rosa_chinensis	RchiOBHm_Chr5g0015061
rosa_laevigata	RLG00000032166
rosa_multiflora	Rmu_co8507481.1_g000001
rosa_roxburghii	Rroxscaffold_1G00061470
rosa_rugosa	Rorug05G0023800 Rorug05G0023900 Rorug05G0023900 Rorug05G0023900 Rorug05G0024000
rosa_samantha	Rh5AG118400 Rh5BG116300 Rh5CG127200 Rh5DG115200
rosa_wichuraiana	Rw5G010230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	125
AciI	CCGC	3 cut(s)	24, 72, 426
AclWI	GGATC	3 cut(s)	123, 312, 528
AcsI	RAATTY	1 cut(s)	206
AfaI	GTAC	1 cut(s)	445
AfiI	CCNNNNNNNGG	2 cut(s)	397, 435
AgsI	TTSAA	2 cut(s)	601, 616
AluBI	AGCT	3 cut(s)	190, 310, 386
AluI	AGCT	3 cut(s)	190, 310, 386
Alw26I	GTCTC	3 cut(s)	233, 261, 395
AlwI	GGATC	3 cut(s)	123, 312, 528
Ama87I	CYCGRG	1 cut(s)	147
AoxI	GGCC	2 cut(s)	143, 194
ApeKI	GCWGC	1 cut(s)	164
ApoI	RAATTY	1 cut(s)	206
AseI	ATTAAT	1 cut(s)	177
AspS9I	GGNCC	1 cut(s)	143
AsuHPI	GGTGA	3 cut(s)	466, 479, 572
AvaI	CYCGRG	1 cut(s)	147
BbsI	GAAGAC	1 cut(s)	483
BbvI	GCAGC	1 cut(s)	151
BccI	CCATC	1 cut(s)	106
BceAI	ACGGC	1 cut(s)	110
BcoDI	GTCTC	3 cut(s)	233, 261, 395
BglII	AGATCT	1 cut(s)	667
BisI	GCNGC	1 cut(s)	165
BlsI	GCNGC	1 cut(s)	166
BmeT110I	CYCGRG	1 cut(s)	147
BmgT120I	GGNCC	1 cut(s)	143
BmsI	GCATC	1 cut(s)	553
BpiI	GAAGAC	1 cut(s)	483
BsaBI	GATNNNNATC	1 cut(s)	519
BsaJI	CCNNGG	2 cut(s)	146, 556
Bsc4I	CCNNNNNNNGG	2 cut(s)	397, 435
Bse8I	GATNNNNATC	1 cut(s)	519
BseDI	CCNNGG	2 cut(s)	146, 556
BseGI	GGATG	3 cut(s)	85, 300, 355
BseJI	GATNNNNATC	1 cut(s)	519
BseLI	CCNNNNNNNGG	2 cut(s)	397, 435
BseMII	CTCAG	1 cut(s)	462
BseRI	GAGGAG	1 cut(s)	661
BseXI	GCAGC	1 cut(s)	151
BsgI	GTGCAG	1 cut(s)	629
Bsh1236I	CGCG	1 cut(s)	125
BshFI	GGCC	2 cut(s)	145, 196
BsiHKCI	CYCGRG	1 cut(s)	147
BslI	CCNNNNNNNGG	2 cut(s)	397, 435
BsmAI	GTCTC	3 cut(s)	233, 261, 395
BsmI	GAATGC	1 cut(s)	349
BsnI	GGCC	2 cut(s)	145, 196
BsoBI	CYCGRG	1 cut(s)	147
Bsp143I	GATC	6 cut(s)	76, 115, 276, 304, 520, 667
BspACI	CCGC	3 cut(s)	24, 72, 426
BspANI	GGCC	2 cut(s)	145, 196
BspCNI	CTCAG	1 cut(s)	461
BspFNI	CGCG	1 cut(s)	125
BspHI	TCATGA	1 cut(s)	202
BspPI	GGATC	3 cut(s)	123, 312, 528
BssECI	CCNNGG	2 cut(s)	146, 556
BssMI	GATC	6 cut(s)	76, 115, 276, 304, 520, 667
Bst4CI	ACNGT	1 cut(s)	607
Bst6I	CTCTTC	2 cut(s)	133, 638
BstDEI	CTNAG	2 cut(s)	377, 448
BstF5I	GGATG	3 cut(s)	85, 300, 355
BstFNI	CGCG	1 cut(s)	125
BstKTI	GATC	6 cut(s)	79, 118, 279, 307, 523, 670
BstMAI	GTCTC	3 cut(s)	233, 261, 395
BstMBI	GATC	6 cut(s)	76, 115, 276, 304, 520, 667
BstMWI	GCNNNNNNNGC	1 cut(s)	61
BstUI	CGCG	1 cut(s)	125
BstV1I	GCAGC	1 cut(s)	151
BstV2I	GAAGAC	1 cut(s)	483
BstX2I	RGATCY	2 cut(s)	115, 667
BstYI	RGATCY	2 cut(s)	115, 667
BsuRI	GGCC	2 cut(s)	145, 196
BtsCI	GGATG	3 cut(s)	85, 300, 355
BtsIMutI	CAGTG	1 cut(s)	456
CciI	TCATGA	1 cut(s)	202
Cfr13I	GGNCC	1 cut(s)	143
CseI	GACGC	2 cut(s)	61, 131
Csp6I	GTAC	1 cut(s)	444
CviAII	CATG	1 cut(s)	203
CviJI	RGCY	9 cut(s)	64, 145, 190, 196, 310, 386, 597, 625, 652
CviKI_1	RGCY	9 cut(s)	64, 145, 190, 196, 310, 386, 597, 625, 652
CviQI	GTAC	1 cut(s)	444
DdeI	CTNAG	2 cut(s)	377, 448
DpnI	GATC	6 cut(s)	78, 117, 278, 306, 522, 669
DpnII	GATC	6 cut(s)	76, 115, 276, 304, 520, 667
Eam1104I	CTCTTC	2 cut(s)	133, 638
EarI	CTCTTC	2 cut(s)	133, 638
EciI	GGCGGA	1 cut(s)	415
Eco88I	CYCGRG	1 cut(s)	147
EcoO109I	RGGNCCY	1 cut(s)	143
EcoRI	GAATTC	1 cut(s)	206
FaeI	CATG	1 cut(s)	206
FatI	CATG	1 cut(s)	202
FauI	CCCGC	1 cut(s)	17
Fnu4HI	GCNGC	1 cut(s)	165
FokI	GGATG	3 cut(s)	72, 307, 342
Fsp4HI	GCNGC	1 cut(s)	165
GluI	GCNGC	1 cut(s)	165
HaeIII	GGCC	2 cut(s)	145, 196
HgaI	GACGC	2 cut(s)	61, 131
Hin1II	CATG	1 cut(s)	206
HindIII	AAGCTT	2 cut(s)	188, 384
HinfI	GANTC	3 cut(s)	241, 439, 699
HphI	GGTGA	3 cut(s)	466, 479, 572
Hpy188I	TCNGA	5 cut(s)	46, 111, 238, 392, 642
Hpy188III	TCNNGA	4 cut(s)	119, 149, 203, 280
Hpy99I	CGWCG	1 cut(s)	546
HpyAV	CCTTC	2 cut(s)	432, 610
HpyCH4III	ACNGT	1 cut(s)	607
HpyCH4IV	ACGT	2 cut(s)	7, 541
HpyCH4V	TGCA	3 cut(s)	216, 347, 610
HpyF10VI	GCNNNNNNNGC	1 cut(s)	61
HpyF3I	CTNAG	2 cut(s)	377, 448
HpySE526I	ACGT	2 cut(s)	7, 541
Hsp92II	CATG	1 cut(s)	206
Kzo9I	GATC	6 cut(s)	76, 115, 276, 304, 520, 667
LpnPI	CCDG	4 cut(s)	41, 265, 423, 639
Lsp1109I	GCAGC	1 cut(s)	151
LweI	GCATC	1 cut(s)	553
MaeII	ACGT	2 cut(s)	7, 541
MaeIII	GTNAC	2 cut(s)	3, 586
MalI	GATC	6 cut(s)	78, 117, 278, 306, 522, 669
MboI	GATC	6 cut(s)	76, 115, 276, 304, 520, 667
MboII	GAAGA	5 cut(s)	150, 242, 488, 655, 677
MflI	RGATCY	2 cut(s)	115, 667
MluCI	AATT	2 cut(s)	206, 299
MlyI	GAGTC	1 cut(s)	235
MmeI	TCCRAC	1 cut(s)	106
MnlI	CCTC	7 cut(s)	134, 156, 283, 457, 566, 639, 642
MseI	TTAA	1 cut(s)	177
Mva1269I	GAATGC	1 cut(s)	349
MvnI	CGCG	1 cut(s)	125
MwoI	GCNNNNNNNGC	1 cut(s)	61
NdeII	GATC	6 cut(s)	76, 115, 276, 304, 520, 667
NlaIII	CATG	1 cut(s)	206
NmeAIII	GCCGAG	1 cut(s)	454
NmuCI	GTSAC	1 cut(s)	3
PagI	TCATGA	1 cut(s)	202
PctI	GAATGC	1 cut(s)	349
PfeI	GAWTC	2 cut(s)	439, 699
PkrI	GCNGC	1 cut(s)	166
PleI	GAGTC	1 cut(s)	235
PpsI	GAGTC	1 cut(s)	235
PshBI	ATTAAT	1 cut(s)	177
PspPI	GGNCC	1 cut(s)	143
PsuI	RGATCY	2 cut(s)	115, 667
RsaI	GTAC	1 cut(s)	445
RsaNI	GTAC	1 cut(s)	444
SaqAI	TTAA	1 cut(s)	177
SatI	GCNGC	1 cut(s)	165
Sau3AI	GATC	6 cut(s)	76, 115, 276, 304, 520, 667
Sau96I	GGNCC	1 cut(s)	143
SchI	GAGTC	1 cut(s)	235
SfaNI	GCATC	1 cut(s)	553
Sse9I	AATT	2 cut(s)	206, 299
SsiI	CCGC	3 cut(s)	24, 72, 426
TaaI	ACNGT	1 cut(s)	607
TaiI	ACGT	2 cut(s)	10, 544
TaqI	TCGA	1 cut(s)	363
TasI	AATT	2 cut(s)	206, 299
TfiI	GAWTC	2 cut(s)	439, 699
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TscAI	CASTG	1 cut(s)	456
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	1 cut(s)	164
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	6 cut(s)	219, 242, 311, 404, 625, 678
TspGWI	ACGGA	1 cut(s)	668
TspRI	CASTG	1 cut(s)	456
VspI	ATTAAT	1 cut(s)	177
XapI	RAATTY	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.