Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010538

Physical Location & Seq

Genomic Coordinates Reverse (-)

10433966 .. 10437569

Gene Structure 3604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29549

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGATCTTGACGCGAAAAGGTTTGGAAGAGGGCCTCGGGAACTTGGTGGTGCTGCCAATCTCATTAATCAGTATAAGCTTTGGCCTTATCATGAATTCTTTTGCAAAAGGTCGCTTCCTTTATCAGAGACTCATTATCTTCATAATGTGGTGGGAGACACAGAGATCAGGAAAGGGGAGGGGATGAAATTGGATCAGCTATTTGAGAACACCCCTTATATGAGAGAAAGGAATGCAAACATACATCCTTTCGATTTGGGTATGCTTAGTGAAGCTTTCCGAATAAAGGAGACAACTCCTGTTCATTTACCTTCCGCCGAGAAAGGGATTCGTACCTCAGTGGTGAAGTCAAAGGGTGAGTTAGAAGACAAGGAAAGGAAGCATAAAAAGAACAAAGACAAGGATAAGGATCGTAAGAAGCACAAAAAACGTCGCAAGGACAACCTCGGTGATGCTGATTACAGCAATAAGAATGTTACTAATGGCTTGAAAACTGTGCAGTTGAAGGAACAGCCAGATATGTTCATTCAGAAGAGGAGGCTCAATGGTTATGAAGATCTTTCTGTCCGTGAAAATAAAAGAGTGAGAATCCAAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

199

Amino Acids

23.4

Weight (kDa)

9.84

Isoelectric Point (pI)

41.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010538)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g09480 FvH4_3g09480
malus_domestica	MD10G1256400.v1.1
prunus_persica	Prupe.4G087000_v2.0.a1 Prupe.4G087200_v2.0.a1 Prupe.4G087200_v2.0.a1
pyrus_communis	pycom10g21220
rosa_chinensis	RchiOBHm_Chr5g0015061
rosa_laevigata	RLG00000032166
rosa_multiflora	Rmu_co8507481.1_g000001
rosa_roxburghii	Rroxscaffold_1G00061470
rosa_rugosa	Rorug05G0023800 Rorug05G0023900 Rorug05G0023900 Rorug05G0023900 Rorug05G0024000
rosa_samantha	Rh5AG118400 Rh5BG116300 Rh5CG127200 Rh5DG115200
rosa_wichuraiana	Rw5G010230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	14
AciI	CCGC	1 cut(s)	315
AclWI	GGATC	3 cut(s)	12, 201, 417
AcsI	RAATTY	1 cut(s)	95
AfaI	GTAC	1 cut(s)	334
AfiI	CCNNNNNNNGG	2 cut(s)	286, 324
AgsI	TTSAA	2 cut(s)	490, 505
AluBI	AGCT	3 cut(s)	79, 199, 275
AluI	AGCT	3 cut(s)	79, 199, 275
Alw26I	GTCTC	3 cut(s)	122, 150, 284
AlwI	GGATC	3 cut(s)	12, 201, 417
Ama87I	CYCGRG	1 cut(s)	36
AoxI	GGCC	2 cut(s)	32, 83
ApeKI	GCWGC	1 cut(s)	53
ApoI	RAATTY	1 cut(s)	95
AseI	ATTAAT	1 cut(s)	66
AspS9I	GGNCC	1 cut(s)	32
AsuHPI	GGTGA	3 cut(s)	355, 368, 461
AvaI	CYCGRG	1 cut(s)	36
BbsI	GAAGAC	1 cut(s)	372
BbvI	GCAGC	1 cut(s)	40
BcoDI	GTCTC	3 cut(s)	122, 150, 284
BglII	AGATCT	1 cut(s)	556
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
BmeT110I	CYCGRG	1 cut(s)	36
BmgT120I	GGNCC	1 cut(s)	32
BmsI	GCATC	1 cut(s)	442
BpiI	GAAGAC	1 cut(s)	372
BsaBI	GATNNNNATC	1 cut(s)	408
BsaJI	CCNNGG	2 cut(s)	35, 445
Bsc4I	CCNNNNNNNGG	2 cut(s)	286, 324
Bse8I	GATNNNNATC	1 cut(s)	408
BseDI	CCNNGG	2 cut(s)	35, 445
BseGI	GGATG	2 cut(s)	189, 244
BseJI	GATNNNNATC	1 cut(s)	408
BseLI	CCNNNNNNNGG	2 cut(s)	286, 324
BseMII	CTCAG	1 cut(s)	351
BseRI	GAGGAG	1 cut(s)	550
BseXI	GCAGC	1 cut(s)	40
BsgI	GTGCAG	1 cut(s)	518
Bsh1236I	CGCG	1 cut(s)	14
BshFI	GGCC	2 cut(s)	34, 85
BsiHKCI	CYCGRG	1 cut(s)	36
BslI	CCNNNNNNNGG	2 cut(s)	286, 324
BsmAI	GTCTC	3 cut(s)	122, 150, 284
BsmI	GAATGC	1 cut(s)	238
BsnI	GGCC	2 cut(s)	34, 85
BsoBI	CYCGRG	1 cut(s)	36
Bsp143I	GATC	5 cut(s)	4, 165, 193, 409, 556
BspACI	CCGC	1 cut(s)	315
BspANI	GGCC	2 cut(s)	34, 85
BspCNI	CTCAG	1 cut(s)	350
BspFNI	CGCG	1 cut(s)	14
BspHI	TCATGA	1 cut(s)	91
BspPI	GGATC	3 cut(s)	12, 201, 417
BssECI	CCNNGG	2 cut(s)	35, 445
BssMI	GATC	5 cut(s)	4, 165, 193, 409, 556
Bst4CI	ACNGT	1 cut(s)	496
Bst6I	CTCTTC	2 cut(s)	22, 527
BstDEI	CTNAG	2 cut(s)	266, 337
BstF5I	GGATG	2 cut(s)	189, 244
BstFNI	CGCG	1 cut(s)	14
BstKTI	GATC	5 cut(s)	7, 168, 196, 412, 559
BstMAI	GTCTC	3 cut(s)	122, 150, 284
BstMBI	GATC	5 cut(s)	4, 165, 193, 409, 556
BstUI	CGCG	1 cut(s)	14
BstV1I	GCAGC	1 cut(s)	40
BstV2I	GAAGAC	1 cut(s)	372
BstX2I	RGATCY	2 cut(s)	4, 556
BstYI	RGATCY	2 cut(s)	4, 556
BsuRI	GGCC	2 cut(s)	34, 85
BtsCI	GGATG	2 cut(s)	189, 244
BtsIMutI	CAGTG	1 cut(s)	345
CciI	TCATGA	1 cut(s)	91
Cfr13I	GGNCC	1 cut(s)	32
CseI	GACGC	1 cut(s)	20
Csp6I	GTAC	1 cut(s)	333
CviAII	CATG	1 cut(s)	92
CviJI	RGCY	8 cut(s)	34, 79, 85, 199, 275, 486, 514, 541
CviKI_1	RGCY	8 cut(s)	34, 79, 85, 199, 275, 486, 514, 541
CviQI	GTAC	1 cut(s)	333
DdeI	CTNAG	2 cut(s)	266, 337
DpnI	GATC	5 cut(s)	6, 167, 195, 411, 558
DpnII	GATC	5 cut(s)	4, 165, 193, 409, 556
Eam1104I	CTCTTC	2 cut(s)	22, 527
EarI	CTCTTC	2 cut(s)	22, 527
EciI	GGCGGA	1 cut(s)	304
Eco88I	CYCGRG	1 cut(s)	36
EcoO109I	RGGNCCY	1 cut(s)	32
EcoRI	GAATTC	1 cut(s)	95
FaeI	CATG	1 cut(s)	95
FatI	CATG	1 cut(s)	91
Fnu4HI	GCNGC	1 cut(s)	54
FokI	GGATG	2 cut(s)	196, 231
Fsp4HI	GCNGC	1 cut(s)	54
GluI	GCNGC	1 cut(s)	54
HaeIII	GGCC	2 cut(s)	34, 85
HgaI	GACGC	1 cut(s)	20
Hin1II	CATG	1 cut(s)	95
HindIII	AAGCTT	2 cut(s)	77, 273
HinfI	GANTC	3 cut(s)	130, 328, 588
HphI	GGTGA	3 cut(s)	355, 368, 461
Hpy188I	TCNGA	3 cut(s)	127, 281, 531
Hpy188III	TCNNGA	4 cut(s)	8, 38, 92, 169
Hpy99I	CGWCG	1 cut(s)	435
HpyAV	CCTTC	2 cut(s)	321, 499
HpyCH4III	ACNGT	1 cut(s)	496
HpyCH4IV	ACGT	1 cut(s)	430
HpyCH4V	TGCA	3 cut(s)	105, 236, 499
HpyF3I	CTNAG	2 cut(s)	266, 337
HpySE526I	ACGT	1 cut(s)	430
Hsp92II	CATG	1 cut(s)	95
Kzo9I	GATC	5 cut(s)	4, 165, 193, 409, 556
LpnPI	CCDG	3 cut(s)	154, 312, 528
Lsp1109I	GCAGC	1 cut(s)	40
LweI	GCATC	1 cut(s)	442
MaeII	ACGT	1 cut(s)	430
MaeIII	GTNAC	1 cut(s)	475
MalI	GATC	5 cut(s)	6, 167, 195, 411, 558
MboI	GATC	5 cut(s)	4, 165, 193, 409, 556
MboII	GAAGA	5 cut(s)	39, 131, 377, 544, 566
MflI	RGATCY	2 cut(s)	4, 556
MluCI	AATT	2 cut(s)	95, 188
MlyI	GAGTC	1 cut(s)	124
MnlI	CCTC	7 cut(s)	23, 45, 172, 346, 455, 528, 531
MseI	TTAA	1 cut(s)	66
Mva1269I	GAATGC	1 cut(s)	238
MvnI	CGCG	1 cut(s)	14
NdeII	GATC	5 cut(s)	4, 165, 193, 409, 556
NlaIII	CATG	1 cut(s)	95
NmeAIII	GCCGAG	1 cut(s)	343
PagI	TCATGA	1 cut(s)	91
PctI	GAATGC	1 cut(s)	238
PfeI	GAWTC	2 cut(s)	328, 588
PkrI	GCNGC	1 cut(s)	55
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
PshBI	ATTAAT	1 cut(s)	66
PspPI	GGNCC	1 cut(s)	32
PsuI	RGATCY	2 cut(s)	4, 556
RsaI	GTAC	1 cut(s)	334
RsaNI	GTAC	1 cut(s)	333
SaqAI	TTAA	1 cut(s)	66
SatI	GCNGC	1 cut(s)	54
Sau3AI	GATC	5 cut(s)	4, 165, 193, 409, 556
Sau96I	GGNCC	1 cut(s)	32
SchI	GAGTC	1 cut(s)	124
SetI	ASST	9 cut(s)	23, 81, 113, 201, 277, 313, 338, 433, 447
SfaNI	GCATC	1 cut(s)	442
Sse9I	AATT	2 cut(s)	95, 188
SsiI	CCGC	1 cut(s)	315
TaaI	ACNGT	1 cut(s)	496
TaiI	ACGT	1 cut(s)	433
TaqI	TCGA	1 cut(s)	252
TasI	AATT	2 cut(s)	95, 188
TfiI	GAWTC	2 cut(s)	328, 588
Tru1I	TTAA	1 cut(s)	66
Tru9I	TTAA	1 cut(s)	66
TscAI	CASTG	1 cut(s)	345
TseI	GCWGC	1 cut(s)	53
TspDTI	ATGAA	6 cut(s)	108, 131, 200, 293, 514, 567
TspGWI	ACGGA	1 cut(s)	557
TspRI	CASTG	1 cut(s)	345
VspI	ATTAAT	1 cut(s)	66
XapI	RAATTY	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.