Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0010538

Physical Location & Seq

Genomic Coordinates Forward (+)

23911443 .. 23915367

Gene Structure 3925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g21220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGACATGTGGGCAATGAAACTTTCCCTCTCCGTTCCTAATCAACGATTGCCGGCGATCCGCGCCCCCGCACCGCCAATCTCCAACGGTCATTTCTCCACCGTTTGCTGTTTCTCCACGACGCGTCGTTTTCAGATGGATCTTGAAGCCAAGAGGTTTGGAAGTGGGCCTCGGGAACTTGGCGGTGCTGCTGATCTCATAAATCAGTATAAGCTTTGTCGTCATCATGAATTCTTTTGCAAGAGATCACTGCCTTTGTCAATATCAGAGACTCATTATCTACATAATGTGGTGGGAGACACATCAATCAGGAAAGGGGAAGGGATGGAATTAGATCAGCTCGTTCAGAACAACCTTTGTACGAGAGAAAAAAGTGGACATATACATCCCTTTGATTTGGATATACTTCATGAAGCTTTTCCATTAAGGGAAACAACTCCTGTTAAATTGCCTTCTGCAGAGAAGGGGATCCGTACCTCAGGGAAGTCAAAAAGTGAGGCTGATAAAAAGGAGAGGAAGCATAAAAAGCAGAGAGACAAGGATAGAGATCACAAGAAACACAGAAACCGTCACAAGGACAACAATGGCAATGCTGGTATGAACAAGAATACCGCTCATGACTTGAAAACTGAGCAGTTGAAGGAACAAAAAGATAGGTTCATCCAGAAGAGGAGGCTTGCTGGTTTTGAAGATCCTCCCGTCTCCGGACATAAAAAAGCCAGAATCAAACGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

245

Amino Acids

28.01

Weight (kDa)

9.93

Isoelectric Point (pI)

43.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010538)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g09480 FvH4_3g09480
malus_domestica	MD10G1256400.v1.1
prunus_persica	Prupe.4G087000_v2.0.a1 Prupe.4G087200_v2.0.a1 Prupe.4G087200_v2.0.a1
pyrus_communis	pycom10g21220
rosa_chinensis	RchiOBHm_Chr5g0015061
rosa_laevigata	RLG00000032166
rosa_multiflora	Rmu_co8507481.1_g000001
rosa_roxburghii	Rroxscaffold_1G00061470
rosa_rugosa	Rorug05G0023800 Rorug05G0023900 Rorug05G0023900 Rorug05G0023900 Rorug05G0024000
rosa_samantha	Rh5AG118400 Rh5BG116300 Rh5CG127200 Rh5DG115200
rosa_wichuraiana	Rw5G010230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	614
AccII	CGCG	2 cut(s)	63, 124
AccIII	TCCGGA	1 cut(s)	704
AciI	CCGC	5 cut(s)	61, 69, 74, 183, 612
AclWI	GGATC	5 cut(s)	52, 147, 463, 476, 686
AcsI	RAATTY	1 cut(s)	230
AfaI	GTAC	2 cut(s)	361, 475
AfiI	CCNNNNNNNGG	2 cut(s)	574, 704
AflIII	ACRYGT	2 cut(s)	6, 122
AgsI	TTSAA	4 cut(s)	146, 625, 640, 689
AjuI	GAANNNNNNNTTGG	2 cut(s)	77, 109
AluBI	AGCT	3 cut(s)	214, 340, 416
AluI	AGCT	3 cut(s)	214, 340, 416
Alw26I	GTCTC	4 cut(s)	263, 291, 528, 706
AlwI	GGATC	5 cut(s)	52, 147, 463, 476, 686
Ama87I	CYCGRG	1 cut(s)	171
Aor13HI	TCCGGA	1 cut(s)	704
AoxI	GGCC	1 cut(s)	167
ApeKI	GCWGC	1 cut(s)	188
ApoI	RAATTY	1 cut(s)	230
Asp700I	GAANNNNTTC	1 cut(s)	417
AspLEI	GCGC	1 cut(s)	65
AspS9I	GGNCC	1 cut(s)	167
AvaI	CYCGRG	1 cut(s)	171
AxyI	CCTNAGG	1 cut(s)	478
BamHI	GGATCC	1 cut(s)	468
BbvI	GCAGC	1 cut(s)	175
BccI	CCATC	2 cut(s)	130, 319
BcoDI	GTCTC	4 cut(s)	263, 291, 528, 706
BfmI	CTRYAG	1 cut(s)	456
BisI	GCNGC	1 cut(s)	189
BlsI	GCNGC	1 cut(s)	190
BmeT110I	CYCGRG	1 cut(s)	171
BmgT120I	GGNCC	1 cut(s)	167
BmiI	GGNNCC	1 cut(s)	470
BsaBI	GATNNNNATC	1 cut(s)	546
BsaJI	CCNNGG	1 cut(s)	170
BsaWI	WCCGGW	1 cut(s)	704
Bsc4I	CCNNNNNNNGG	2 cut(s)	574, 704
Bse118I	RCCGGY	1 cut(s)	52
Bse21I	CCTNAGG	1 cut(s)	478
Bse3DI	GCAATG	2 cut(s)	21, 595
Bse8I	GATNNNNATC	1 cut(s)	546
BseAI	TCCGGA	1 cut(s)	704
BseDI	CCNNGG	1 cut(s)	170
BseGI	GGATG	3 cut(s)	330, 385, 660
BseJI	GATNNNNATC	1 cut(s)	546
BseLI	CCNNNNNNNGG	2 cut(s)	574, 704
BseMI	GCAATG	2 cut(s)	21, 595
BseMII	CTCAG	2 cut(s)	492, 621
BseRI	GAGGAG	1 cut(s)	685
BseXI	GCAGC	1 cut(s)	175
Bsh1236I	CGCG	2 cut(s)	63, 124
BshFI	GGCC	1 cut(s)	169
BsiHKCI	CYCGRG	1 cut(s)	171
BsiSI	CCGG	2 cut(s)	53, 705
BslI	CCNNNNNNNGG	2 cut(s)	574, 704
BsmAI	GTCTC	4 cut(s)	263, 291, 528, 706
BsmBI	CGTCTC	1 cut(s)	706
BsnI	GGCC	1 cut(s)	169
BsoBI	CYCGRG	1 cut(s)	171
Bsp13I	TCCGGA	1 cut(s)	704
Bsp143I	GATC	8 cut(s)	57, 139, 193, 245, 334, 468, 547, 691
BspACI	CCGC	5 cut(s)	61, 69, 74, 183, 612
BspANI	GGCC	1 cut(s)	169
BspCNI	CTCAG	2 cut(s)	491, 622
BspEI	TCCGGA	1 cut(s)	704
BspFNI	CGCG	2 cut(s)	63, 124
BspHI	TCATGA	3 cut(s)	226, 409, 616
BspLI	GGNNCC	1 cut(s)	470
BspMAI	CTGCAG	1 cut(s)	460
BspPI	GGATC	5 cut(s)	52, 147, 463, 476, 686
BsrBI	CCGCTC	1 cut(s)	614
BsrDI	GCAATG	2 cut(s)	21, 595
BsrFI	RCCGGY	1 cut(s)	52
BssAI	RCCGGY	1 cut(s)	52
BssECI	CCNNGG	1 cut(s)	170
BssMI	GATC	8 cut(s)	57, 139, 193, 245, 334, 468, 547, 691
Bst4CI	ACNGT	3 cut(s)	89, 103, 569
Bst6I	CTCTTC	1 cut(s)	662
BstC8I	GCNNGC	2 cut(s)	54, 678
BstDEI	CTNAG	2 cut(s)	478, 630
BstF5I	GGATG	3 cut(s)	330, 385, 660
BstFNI	CGCG	2 cut(s)	63, 124
BstHHI	GCGC	1 cut(s)	65
BstKTI	GATC	8 cut(s)	60, 142, 196, 248, 337, 471, 550, 694
BstMAI	GTCTC	4 cut(s)	263, 291, 528, 706
BstMBI	GATC	8 cut(s)	57, 139, 193, 245, 334, 468, 547, 691
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 526
BstNSI	RCATGY	1 cut(s)	10
BstSFI	CTRYAG	1 cut(s)	456
BstUI	CGCG	2 cut(s)	63, 124
BstV1I	GCAGC	1 cut(s)	175
BstX2I	RGATCY	3 cut(s)	139, 468, 691
BstYI	RGATCY	3 cut(s)	139, 468, 691
Bsu36I	CCTNAGG	1 cut(s)	478
BsuRI	GGCC	1 cut(s)	169
BtsCI	GGATG	3 cut(s)	330, 385, 660
BtsI	GCAGTG	1 cut(s)	248
BtsIMutI	CAGTG	1 cut(s)	248
Cac8I	GCNNGC	2 cut(s)	54, 678
CciI	TCATGA	3 cut(s)	226, 409, 616
CfoI	GCGC	1 cut(s)	65
Cfr10I	RCCGGY	1 cut(s)	52
Cfr13I	GGNCC	1 cut(s)	167
CseI	GACGC	2 cut(s)	113, 130
Csp6I	GTAC	2 cut(s)	360, 474
CviAII	CATG	4 cut(s)	7, 227, 410, 617
CviJI	RGCY	8 cut(s)	149, 169, 214, 340, 416, 500, 676, 719
CviKI_1	RGCY	8 cut(s)	149, 169, 214, 340, 416, 500, 676, 719
CviQI	GTAC	2 cut(s)	360, 474
DdeI	CTNAG	2 cut(s)	478, 630
DpnI	GATC	8 cut(s)	59, 141, 195, 247, 336, 470, 549, 693
DpnII	GATC	8 cut(s)	57, 139, 193, 245, 334, 468, 547, 691
Eam1104I	CTCTTC	1 cut(s)	662
EarI	CTCTTC	1 cut(s)	662
Eco81I	CCTNAGG	1 cut(s)	478
Eco88I	CYCGRG	1 cut(s)	171
EcoRI	GAATTC	1 cut(s)	230
Esp3I	CGTCTC	1 cut(s)	706
FaeI	CATG	4 cut(s)	10, 230, 413, 620
FatI	CATG	4 cut(s)	6, 226, 409, 616
FauI	CCCGC	1 cut(s)	76
Fnu4HI	GCNGC	1 cut(s)	189
FokI	GGATG	3 cut(s)	337, 372, 647
Fsp4HI	GCNGC	1 cut(s)	189
GlaI	GCGC	1 cut(s)	64
GluI	GCNGC	1 cut(s)	189
HaeIII	GGCC	1 cut(s)	169
HapII	CCGG	2 cut(s)	53, 705
HgaI	GACGC	2 cut(s)	113, 130
HhaI	GCGC	1 cut(s)	65
Hin1II	CATG	4 cut(s)	10, 230, 413, 620
Hin6I	GCGC	1 cut(s)	63
HinP1I	GCGC	1 cut(s)	63
HindIII	AAGCTT	2 cut(s)	212, 414
HinfI	GANTC	2 cut(s)	271, 723
HpaII	CCGG	2 cut(s)	53, 705
Hpy166II	GTNNAC	1 cut(s)	377
Hpy188I	TCNGA	3 cut(s)	135, 268, 348
Hpy188III	TCNNGA	8 cut(s)	143, 173, 227, 310, 410, 617, 664, 705
Hpy8I	GTNNAC	1 cut(s)	377
Hpy99I	CGWCG	2 cut(s)	124, 129
HpyAV	CCTTC	4 cut(s)	314, 457, 462, 634
HpyCH4III	ACNGT	3 cut(s)	89, 103, 569
HpyCH4V	TGCA	2 cut(s)	240, 458
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 526
HpyF3I	CTNAG	2 cut(s)	478, 630
Hsp92II	CATG	4 cut(s)	10, 230, 413, 620
HspAI	GCGC	1 cut(s)	63
Kpn2I	TCCGGA	1 cut(s)	704
KroI	GCCGGC	1 cut(s)	52
KroNI	GCCGGC	1 cut(s)	54
Kzo9I	GATC	8 cut(s)	57, 139, 193, 245, 334, 468, 547, 691
LpnPI	CCDG	8 cut(s)	66, 295, 453, 465, 579, 666, 677, 718
Lsp1109I	GCAGC	1 cut(s)	175
MaeIII	GTNAC	1 cut(s)	569
MalI	GATC	8 cut(s)	59, 141, 195, 247, 336, 470, 549, 693
MbiI	CCGCTC	1 cut(s)	614
MboI	GATC	8 cut(s)	57, 139, 193, 245, 334, 468, 547, 691
MboII	GAAGA	2 cut(s)	679, 701
MflI	RGATCY	3 cut(s)	139, 468, 691
MluCI	AATT	3 cut(s)	230, 329, 446
MluI	ACGCGT	1 cut(s)	122
MlyI	GAGTC	1 cut(s)	265
MmeI	TCCRAC	1 cut(s)	108
MnlI	CCTC	9 cut(s)	38, 147, 180, 487, 490, 507, 663, 666, 705
MroI	TCCGGA	1 cut(s)	704
MroNI	GCCGGC	1 cut(s)	52
MroXI	GAANNNNTTC	1 cut(s)	417
MseI	TTAA	2 cut(s)	425, 444
MspI	CCGG	2 cut(s)	53, 705
MvnI	CGCG	2 cut(s)	63, 124
MwoI	GCNNNNNNNGC	2 cut(s)	62, 526
NaeI	GCCGGC	1 cut(s)	54
NdeII	GATC	8 cut(s)	57, 139, 193, 245, 334, 468, 547, 691
NgoMIV	GCCGGC	1 cut(s)	52
NlaIII	CATG	4 cut(s)	10, 230, 413, 620
NlaIV	GGNNCC	1 cut(s)	470
NmuCI	GTSAC	1 cut(s)	569
NspI	RCATGY	1 cut(s)	10
PagI	TCATGA	3 cut(s)	226, 409, 616
PciI	ACATGT	1 cut(s)	6
PdiI	GCCGGC	1 cut(s)	54
PdmI	GAANNNNTTC	1 cut(s)	417
PfeI	GAWTC	1 cut(s)	723
PkrI	GCNGC	1 cut(s)	190
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
PscI	ACATGT	1 cut(s)	6
PspN4I	GGNNCC	1 cut(s)	470
PspPI	GGNCC	1 cut(s)	167
PstI	CTGCAG	1 cut(s)	460
PsuI	RGATCY	3 cut(s)	139, 468, 691
RsaI	GTAC	2 cut(s)	361, 475
RsaNI	GTAC	2 cut(s)	360, 474
SaqAI	TTAA	2 cut(s)	425, 444
SatI	GCNGC	1 cut(s)	189
Sau3AI	GATC	8 cut(s)	57, 139, 193, 245, 334, 468, 547, 691
Sau96I	GGNCC	1 cut(s)	167
SchI	GAGTC	1 cut(s)	265
SetI	ASST	7 cut(s)	158, 216, 342, 357, 418, 479, 659
SfcI	CTRYAG	1 cut(s)	456
Sse9I	AATT	3 cut(s)	230, 329, 446
SsiI	CCGC	5 cut(s)	61, 69, 74, 183, 612
TaaI	ACNGT	3 cut(s)	89, 103, 569
TasI	AATT	3 cut(s)	230, 329, 446
TfiI	GAWTC	1 cut(s)	723
Tru1I	TTAA	2 cut(s)	425, 444
Tru9I	TTAA	2 cut(s)	425, 444
TscAI	CASTG	1 cut(s)	255
TseFI	GTSAC	1 cut(s)	569
TseI	GCWGC	1 cut(s)	188
Tsp45I	GTSAC	1 cut(s)	569
TspDTI	ATGAA	6 cut(s)	32, 243, 398, 426, 614, 649
TspGWI	ACGGA	2 cut(s)	22, 461
TspRI	CASTG	1 cut(s)	255
XapI	RAATTY	1 cut(s)	230
XceI	RCATGY	1 cut(s)	10
XmnI	GAANNNNTTC	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.